Wall clock time and date at job start Tue Mar 31 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47572 * 2 1 4 4 H 1.08997 * 109.46980 * 305.00130 * 3 2 1 5 5 C 1.52999 * 109.46981 * 64.99966 * 3 2 1 6 6 C 1.52994 * 109.47322 * 184.99834 * 3 2 1 7 7 C 1.50701 * 109.47298 * 174.99782 * 6 3 2 8 8 O 1.21285 * 119.99852 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00392 * 179.97438 * 7 6 3 10 10 C 1.46497 * 120.00217 * 179.72719 * 9 7 6 11 11 C 1.52999 * 109.47270 * 180.28184 * 10 9 7 12 12 H 1.09004 * 115.51495 * 330.57697 * 11 10 9 13 13 C 1.53001 * 117.44463 * 185.17092 * 11 10 9 14 14 H 1.08999 * 119.53863 * 4.11323 * 13 11 10 15 15 C 1.54385 * 118.12587 * 160.80840 * 13 11 10 16 16 N 1.48003 * 104.65112 * 87.21436 * 15 13 11 17 17 C 1.36945 * 127.84284 * 140.40442 * 16 15 13 18 18 H 1.07994 * 120.00078 * 195.64602 * 17 16 15 19 19 C 1.38808 * 119.99610 * 15.64774 * 17 16 15 20 20 N 1.31616 * 120.00590 * 9.09699 * 19 17 16 21 21 Si 1.86801 * 119.99996 * 189.09791 * 19 17 16 22 22 H 1.48500 * 109.46820 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47255 * 119.99718 * 21 19 17 24 24 H 1.48497 * 109.47253 * 240.00277 * 21 19 17 25 25 C 1.48141 * 104.32212 * 320.45634 * 16 15 13 26 26 C 1.53005 * 117.44630 * 115.99976 * 11 10 9 27 27 H 1.08994 * 119.53697 * 355.88113 * 26 11 10 28 28 H 1.08996 * 109.47010 * 59.99412 * 1 2 3 29 29 H 1.08998 * 109.47543 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47098 * 300.00022 * 1 2 3 31 31 H 1.09005 * 109.47098 * 239.99978 * 2 1 3 32 32 H 1.09001 * 109.47312 * 119.99933 * 2 1 3 33 33 H 1.09004 * 109.47506 * 60.00288 * 5 3 2 34 34 H 1.09004 * 109.47545 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47575 * 300.00249 * 5 3 2 36 36 H 1.09004 * 109.47288 * 55.00386 * 6 3 2 37 37 H 1.08998 * 109.47737 * 295.00096 * 6 3 2 38 38 H 0.97002 * 120.00098 * 0.02562 * 9 7 6 39 39 H 1.09005 * 109.47531 * 300.27820 * 10 9 7 40 40 H 1.08998 * 109.47485 * 60.27589 * 10 9 7 41 41 H 1.09004 * 110.40990 * 205.97743 * 15 13 11 42 42 H 1.08997 * 110.40607 * 328.39784 * 15 13 11 43 43 H 0.96994 * 120.00753 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.41053 * 280.75420 * 25 16 15 45 45 H 1.09005 * 110.41007 * 158.32061 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 6 4.0571 2.8632 -0.2492 8 8 3.2662 3.7826 -0.2374 9 7 5.3762 3.1107 -0.3718 10 6 5.8542 4.4897 -0.4980 11 6 7.3786 4.4912 -0.6287 12 1 7.8929 3.6661 -0.1359 13 6 8.0832 5.8491 -0.6499 14 1 7.5008 6.7590 -0.5053 15 6 9.5927 5.8909 -0.3289 16 7 10.2587 5.6547 -1.6293 17 6 11.3877 6.2574 -2.1168 18 1 11.6276 6.1853 -3.1673 19 6 12.2236 6.9609 -1.2606 20 7 12.0340 6.9015 0.0405 21 14 13.6178 7.9922 -1.9550 22 1 13.6172 7.8918 -3.4366 23 1 13.4318 9.4100 -1.5544 24 1 14.9129 7.4941 -1.4261 25 6 9.4263 4.6192 -2.2846 26 6 7.9735 5.0110 -1.9390 27 1 7.3094 5.2965 -2.7547 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0699 1.5875 2.1492 34 1 1.9983 3.1543 1.3072 35 1 0.5490 2.1253 1.3970 36 1 3.8571 0.8799 -1.0113 37 1 4.0030 0.9835 0.7596 38 1 6.0088 2.3754 -0.3809 39 1 5.4132 4.9476 -1.3834 40 1 5.5648 5.0569 0.3867 41 1 9.8702 6.8676 0.0677 42 1 9.8524 5.1044 0.3798 43 1 12.6178 7.3934 0.6387 44 1 9.6599 3.6333 -1.8827 45 1 9.5781 4.6363 -3.3639 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734159292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:06 Heat of formation + Delta-G solvation = -3.892630 kcal Electronic energy + Delta-G solvation = -21489.326820 eV Core-core repulsion = 18314.635387 eV Total energy + Delta-G solvation = -3174.691434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.00542 -38.81620 -36.65208 -34.90304 -33.34481 -31.23399 -30.69098 -28.37773 -27.15761 -26.80232 -24.96836 -23.88892 -21.17020 -20.83227 -20.18182 -19.60424 -19.25419 -17.09686 -16.79258 -16.15717 -15.73845 -15.21229 -14.81492 -14.56817 -14.33043 -13.97093 -13.70268 -13.47155 -13.09931 -12.78246 -12.68943 -12.65079 -12.15835 -12.01424 -11.84774 -11.58384 -11.27613 -11.12095 -11.06031 -10.86915 -10.85302 -10.79685 -10.65679 -10.31167 -10.11931 -9.83758 -9.75091 -9.39830 -9.12204 -8.92243 -8.65410 -6.88422 -5.81673 -3.16075 2.61985 3.14436 3.36581 3.42638 3.45105 4.13036 4.44565 4.51210 4.54277 4.62955 4.88441 4.97492 5.01069 5.22090 5.27900 5.33044 5.38577 5.42108 5.44327 5.44606 5.51079 5.53744 5.71407 5.78019 5.81102 5.81986 5.88905 5.91386 5.95047 5.99628 6.17858 6.21644 6.27849 6.42198 6.55883 6.65133 6.70101 6.90552 7.34252 7.49570 7.51829 7.70435 8.19418 8.21548 9.09513 9.72143 10.49104 11.32697 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.062131 B = 0.002430 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.552786 B =11520.984699 C =11661.481490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.155 4.155 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.542 6.542 9 N -0.726 5.726 10 C 0.154 3.846 11 C -0.150 4.150 12 H 0.102 0.898 13 C -0.162 4.162 14 H 0.103 0.897 15 C 0.184 3.816 16 N -0.595 5.595 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.154 3.846 26 C -0.172 4.172 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.401 0.599 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.023 0.977 43 H 0.254 0.746 44 H 0.024 0.976 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.589 -13.163 0.926 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.296 3.704 8 O -0.419 6.419 9 N -0.378 5.378 10 C 0.031 3.969 11 C -0.169 4.169 12 H 0.120 0.880 13 C -0.183 4.183 14 H 0.121 0.879 15 C 0.058 3.942 16 N -0.318 5.318 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.028 3.972 26 C -0.191 4.191 27 H 0.120 0.880 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.895 -12.328 0.980 22.582 hybrid contribution 1.081 0.175 -0.309 1.138 sum -17.814 -12.153 0.671 21.575 Atomic orbital electron populations 1.21806 0.95778 1.01382 1.02109 1.21599 0.96158 0.96163 1.01890 1.20910 0.92769 0.95899 0.99908 0.90435 1.21999 1.01092 1.02237 0.95842 1.21778 0.97799 0.94082 1.04185 1.20704 0.82079 0.91667 0.75928 1.90667 1.54695 1.46720 1.49865 1.46109 1.07565 1.09585 1.74506 1.20851 0.91968 0.82332 1.01761 1.22532 0.92637 0.99665 1.02041 0.87970 1.24218 0.99773 0.92485 1.01778 0.87918 1.21037 0.83358 1.01859 0.87941 1.45186 1.27643 1.42220 1.16763 1.19044 0.97374 1.26414 0.92639 0.90521 1.24906 0.98481 1.01682 0.95295 1.69902 1.40200 1.44948 1.01129 0.86039 0.81604 0.79921 0.78144 1.20353 1.21591 1.21688 1.21142 0.87334 0.92071 0.96703 1.23972 0.99000 1.05514 0.90661 0.87970 0.92734 0.92940 0.92398 0.92035 0.91973 0.93445 0.90675 0.92802 0.88972 0.88952 0.76451 0.91565 0.91246 0.89197 0.95895 0.93589 0.95849 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.81 5.40 -26.73 -0.14 -0.95 16 3 C -0.08 -0.65 2.04 -90.62 -0.18 -0.84 16 4 H 0.08 0.79 7.96 -51.93 -0.41 0.37 16 5 C -0.15 -1.46 8.69 37.16 0.32 -1.13 16 6 C -0.14 -1.12 5.17 -27.89 -0.14 -1.27 16 7 C 0.51 6.00 7.55 -10.99 -0.08 5.92 16 8 O -0.54 -8.37 13.96 5.55 0.08 -8.29 16 9 N -0.73 -8.12 5.56 -60.30 -0.33 -8.45 16 10 C 0.15 2.07 5.95 -4.04 -0.02 2.05 16 11 C -0.15 -2.27 5.40 -90.62 -0.49 -2.75 16 12 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 13 C -0.16 -3.05 6.85 -89.29 -0.61 -3.66 16 14 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 15 C 0.18 4.38 5.69 -2.49 -0.01 4.37 16 16 N -0.59 -15.19 3.38 -168.98 -0.57 -15.76 16 17 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.65 16 19 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 20 N -0.92 -26.74 10.87 55.49 0.60 -26.14 16 21 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.15 3.18 7.04 -2.41 -0.02 3.16 16 26 C -0.17 -3.00 6.74 -89.29 -0.60 -3.60 16 27 H 0.10 1.67 8.12 -51.93 -0.42 1.24 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16 35 H 0.05 0.46 6.57 -51.93 -0.34 0.12 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 3.54 8.40 -40.82 -0.34 3.20 16 39 H 0.07 0.95 7.94 -51.93 -0.41 0.53 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -31.40 356.48 -9.72 -41.11 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.96 Total: 1.38 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.88 Total: -6.08 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.30 Total: -50.35 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.40 -9.72 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734159292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.221 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds