Wall clock time and date at job start Tue Mar 31 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47572 * 2 1 4 4 H 1.08997 * 109.46980 * 305.00130 * 3 2 1 5 5 C 1.52999 * 109.46981 * 64.99966 * 3 2 1 6 6 C 1.52994 * 109.47322 * 184.99834 * 3 2 1 7 7 C 1.50701 * 109.47298 * 174.99782 * 6 3 2 8 8 O 1.21285 * 119.99852 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00392 * 179.97438 * 7 6 3 10 10 C 1.46497 * 120.00217 * 179.72719 * 9 7 6 11 11 C 1.52999 * 109.47270 * 180.28184 * 10 9 7 12 12 H 1.09004 * 115.51495 * 330.57697 * 11 10 9 13 13 C 1.53001 * 117.44463 * 185.17092 * 11 10 9 14 14 H 1.08999 * 119.53863 * 4.11323 * 13 11 10 15 15 C 1.54385 * 118.12587 * 160.80840 * 13 11 10 16 16 N 1.48003 * 104.65112 * 87.21436 * 15 13 11 17 17 C 1.36945 * 127.84284 * 140.40442 * 16 15 13 18 18 H 1.07994 * 120.00078 * 195.64602 * 17 16 15 19 19 C 1.38808 * 119.99610 * 15.64774 * 17 16 15 20 20 N 1.31616 * 120.00590 * 9.09699 * 19 17 16 21 21 Si 1.86801 * 119.99996 * 189.09791 * 19 17 16 22 22 H 1.48500 * 109.46820 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47255 * 119.99718 * 21 19 17 24 24 H 1.48497 * 109.47253 * 240.00277 * 21 19 17 25 25 C 1.48141 * 104.32212 * 320.45634 * 16 15 13 26 26 C 1.53005 * 117.44630 * 115.99976 * 11 10 9 27 27 H 1.08994 * 119.53697 * 355.88113 * 26 11 10 28 28 H 1.08996 * 109.47010 * 59.99412 * 1 2 3 29 29 H 1.08998 * 109.47543 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47098 * 300.00022 * 1 2 3 31 31 H 1.09005 * 109.47098 * 239.99978 * 2 1 3 32 32 H 1.09001 * 109.47312 * 119.99933 * 2 1 3 33 33 H 1.09004 * 109.47506 * 60.00288 * 5 3 2 34 34 H 1.09004 * 109.47545 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47575 * 300.00249 * 5 3 2 36 36 H 1.09004 * 109.47288 * 55.00386 * 6 3 2 37 37 H 1.08998 * 109.47737 * 295.00096 * 6 3 2 38 38 H 0.97002 * 120.00098 * 0.02562 * 9 7 6 39 39 H 1.09005 * 109.47531 * 300.27820 * 10 9 7 40 40 H 1.08998 * 109.47485 * 60.27589 * 10 9 7 41 41 H 1.09004 * 110.40990 * 205.97743 * 15 13 11 42 42 H 1.08997 * 110.40607 * 328.39784 * 15 13 11 43 43 H 0.96994 * 120.00753 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.41053 * 280.75420 * 25 16 15 45 45 H 1.09005 * 110.41007 * 158.32061 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 6 4.0571 2.8632 -0.2492 8 8 3.2662 3.7826 -0.2374 9 7 5.3762 3.1107 -0.3718 10 6 5.8542 4.4897 -0.4980 11 6 7.3786 4.4912 -0.6287 12 1 7.8929 3.6661 -0.1359 13 6 8.0832 5.8491 -0.6499 14 1 7.5008 6.7590 -0.5053 15 6 9.5927 5.8909 -0.3289 16 7 10.2587 5.6547 -1.6293 17 6 11.3877 6.2574 -2.1168 18 1 11.6276 6.1853 -3.1673 19 6 12.2236 6.9609 -1.2606 20 7 12.0340 6.9015 0.0405 21 14 13.6178 7.9922 -1.9550 22 1 13.6172 7.8918 -3.4366 23 1 13.4318 9.4100 -1.5544 24 1 14.9129 7.4941 -1.4261 25 6 9.4263 4.6192 -2.2846 26 6 7.9735 5.0110 -1.9390 27 1 7.3094 5.2965 -2.7547 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0699 1.5875 2.1492 34 1 1.9983 3.1543 1.3072 35 1 0.5490 2.1253 1.3970 36 1 3.8571 0.8799 -1.0113 37 1 4.0030 0.9835 0.7596 38 1 6.0088 2.3754 -0.3809 39 1 5.4132 4.9476 -1.3834 40 1 5.5648 5.0569 0.3867 41 1 9.8702 6.8676 0.0677 42 1 9.8524 5.1044 0.3798 43 1 12.6178 7.3934 0.6387 44 1 9.6599 3.6333 -1.8827 45 1 9.5781 4.6363 -3.3639 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734159292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:06 Heat of formation + Delta-G solvation = -22.573514 kcal Electronic energy + Delta-G solvation = -21490.136884 eV Core-core repulsion = 18314.635387 eV Total energy + Delta-G solvation = -3175.501498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02203 -40.27139 -37.37501 -36.22240 -34.95789 -32.78621 -31.61850 -29.42040 -28.87974 -28.09168 -26.45746 -24.66505 -22.85996 -21.90243 -21.18004 -20.84588 -20.54530 -18.85170 -17.96339 -17.18931 -16.79404 -16.53047 -16.06215 -15.81830 -15.50849 -14.96452 -14.94767 -14.63070 -14.51550 -14.33689 -13.86369 -13.40101 -13.32757 -13.19334 -12.93414 -12.76797 -12.76064 -12.65416 -12.29781 -12.15153 -11.98243 -11.92138 -11.77904 -11.72709 -11.51143 -11.36226 -10.99949 -10.80068 -10.69009 -10.48121 -9.97532 -8.91638 -7.92966 -5.29287 1.45646 1.46569 1.57408 1.72809 2.19921 2.46617 2.74343 3.25425 3.62300 3.70544 3.80270 3.85235 3.90242 4.03613 4.19823 4.27014 4.32139 4.42341 4.49205 4.55647 4.64942 4.66933 4.71104 4.77147 4.78730 4.87805 4.93203 4.95805 5.01751 5.17555 5.19588 5.23363 5.27767 5.33780 5.35566 5.44281 5.49201 5.52408 5.58603 5.63909 5.65548 6.17328 6.63824 7.00402 7.34176 7.67488 8.45598 9.20959 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.062131 B = 0.002430 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.552786 B =11520.984699 C =11661.481490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.057 0.943 5 C -0.153 4.153 6 C -0.131 4.131 7 C 0.506 3.494 8 O -0.583 6.583 9 N -0.719 5.719 10 C 0.163 3.837 11 C -0.107 4.107 12 H 0.111 0.889 13 C -0.179 4.179 14 H 0.111 0.889 15 C 0.190 3.810 16 N -0.621 5.621 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.065 4.065 20 N -0.947 5.947 21 Si 0.980 3.020 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.149 3.851 26 C -0.160 4.160 27 H 0.122 0.878 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.416 0.584 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.003 0.997 43 H 0.250 0.750 44 H 0.030 0.970 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.516 -15.084 0.074 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.075 0.925 5 C -0.210 4.210 6 C -0.171 4.171 7 C 0.294 3.706 8 O -0.463 6.463 9 N -0.371 5.371 10 C 0.039 3.961 11 C -0.126 4.126 12 H 0.129 0.871 13 C -0.200 4.200 14 H 0.129 0.871 15 C 0.064 3.936 16 N -0.346 5.346 17 C -0.368 4.368 18 H 0.099 0.901 19 C -0.258 4.258 20 N -0.595 5.595 21 Si 0.808 3.192 22 H -0.189 1.189 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.024 3.976 26 C -0.180 4.180 27 H 0.140 0.860 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.252 0.748 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.832 -14.296 0.106 24.448 hybrid contribution 1.329 0.733 -0.038 1.519 sum -18.502 -13.563 0.068 22.941 Atomic orbital electron populations 1.21826 0.95897 1.01914 1.01666 1.21561 0.96050 0.94715 1.02914 1.20893 0.93243 0.96864 0.98460 0.92475 1.21958 1.01327 1.00712 0.96971 1.21826 0.97228 0.91680 1.06345 1.21387 0.81619 0.92833 0.74716 1.90664 1.55695 1.48314 1.51631 1.45999 1.07939 1.08989 1.74180 1.20601 0.90257 0.83798 1.01417 1.22420 0.93526 0.97219 0.99421 0.87133 1.23906 0.97119 0.95094 1.03831 0.87149 1.20762 0.86670 0.98945 0.87234 1.45514 1.27851 1.43649 1.17548 1.19421 0.98133 1.26282 0.92993 0.90127 1.25755 1.01225 1.03198 0.95647 1.70093 1.41207 1.45961 1.02283 0.84994 0.78315 0.77766 0.78130 1.18853 1.21847 1.21762 1.21302 0.88397 0.91131 0.96818 1.23901 0.97713 1.05009 0.91358 0.85995 0.93316 0.91900 0.92789 0.90937 0.90932 0.92311 0.93613 0.92529 0.86515 0.86710 0.74752 0.91881 0.91816 0.93037 0.97907 0.94123 0.95248 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.67 71.98 0.70 -1.04 16 2 C -0.11 -1.23 5.40 30.59 0.17 -1.06 16 3 C -0.08 -1.16 2.04 -10.80 -0.02 -1.18 16 4 H 0.06 1.11 7.96 -2.39 -0.02 1.09 16 5 C -0.15 -2.72 8.69 71.98 0.63 -2.09 16 6 C -0.13 -1.73 5.17 29.85 0.15 -1.57 16 7 C 0.51 10.89 7.55 87.66 0.66 11.55 16 8 O -0.58 -17.61 13.96 -3.04 -0.04 -17.65 16 9 N -0.72 -14.10 5.56 -463.07 -2.57 -16.67 16 10 C 0.16 4.04 5.95 86.38 0.51 4.55 16 11 C -0.11 -3.00 5.40 -10.79 -0.06 -3.06 16 12 H 0.11 3.01 8.04 -2.39 -0.02 2.99 16 13 C -0.18 -6.63 6.85 -9.93 -0.07 -6.70 16 14 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 15 C 0.19 9.29 5.69 86.56 0.49 9.78 16 16 N -0.62 -32.07 3.38 -688.53 -2.32 -34.39 16 17 C -0.24 -13.46 10.35 84.03 0.87 -12.59 16 18 H 0.08 4.34 7.84 -2.91 -0.02 4.31 16 19 C -0.06 -3.69 5.40 84.86 0.46 -3.23 16 20 N -0.95 -57.12 10.87 21.65 0.24 -56.88 16 21 Si 0.98 45.59 29.56 68.60 2.03 47.62 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 C 0.15 5.98 7.04 86.54 0.61 6.59 16 26 C -0.16 -5.28 6.74 -9.93 -0.07 -5.35 16 27 H 0.12 3.60 8.12 -2.39 -0.02 3.59 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.64 6.57 -2.38 -0.02 0.62 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.04 1.10 5.95 -2.39 -0.01 1.08 16 35 H 0.06 0.94 6.57 -2.39 -0.02 0.92 16 36 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.42 5.84 8.40 -92.71 -0.78 5.06 16 39 H 0.06 1.66 7.94 -2.38 -0.02 1.64 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 2.89 6.51 -2.38 -0.02 2.88 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -70.12 356.48 2.53 -67.59 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.18 Total: 15.81 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.03 Total: -5.42 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.66 Total: -107.95 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.04 Total: -17.65 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -70.12 2.53 -67.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734159292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.012 kcal (2) G-P(sol) polarization free energy of solvation -70.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds