Wall clock time and date at job start Tue Mar 31 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47509 * 2 1 4 4 H 1.09007 * 115.54597 * 29.33045 * 3 2 1 5 5 C 1.52996 * 117.51966 * 243.62893 * 3 2 1 6 6 C 1.52997 * 60.00046 * 252.51853 * 5 3 2 7 7 H 1.08997 * 117.51859 * 107.48349 * 6 5 3 8 8 C 1.50699 * 117.49849 * 252.51058 * 6 5 3 9 9 O 1.21283 * 119.99939 * 68.62495 * 8 6 5 10 10 N 1.34774 * 120.00255 * 248.62124 * 8 6 5 11 11 C 1.46504 * 119.99921 * 0.02562 * 10 8 6 12 12 C 1.46505 * 120.00567 * 180.02562 * 10 8 6 13 13 H 1.08995 * 109.46513 * 0.02562 * 12 10 8 14 14 C 1.52992 * 109.47108 * 240.00160 * 12 10 8 15 15 N 1.46498 * 109.47364 * 54.99587 * 14 12 10 16 16 C 1.36935 * 120.00239 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72253 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72375 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72186 * 20 18 16 24 24 C 1.52998 * 109.47001 * 119.99886 * 12 10 8 25 25 C 1.53002 * 117.49951 * 248.62205 * 24 12 10 26 26 C 1.52996 * 60.00063 * 252.51614 * 25 24 12 27 27 H 1.08998 * 109.47289 * 300.00003 * 1 2 3 28 28 H 1.09001 * 109.46918 * 59.99402 * 1 2 3 29 29 H 1.08998 * 109.47732 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46785 * 240.00119 * 2 1 3 31 31 H 1.09001 * 109.46918 * 120.00598 * 2 1 3 32 32 H 1.09007 * 117.49786 * 145.03062 * 5 3 2 33 33 H 1.08998 * 117.50086 * 0.02562 * 5 3 2 34 34 H 1.09003 * 109.46867 * 270.00342 * 11 10 8 35 35 H 1.09003 * 109.46683 * 29.99587 * 11 10 8 36 36 H 1.08996 * 109.47640 * 150.00021 * 11 10 8 37 37 H 1.09001 * 109.47602 * 294.99460 * 14 12 10 38 38 H 1.09001 * 109.46922 * 174.99605 * 14 12 10 39 39 H 0.97004 * 119.99747 * 0.02562 * 15 14 12 40 40 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 41 41 H 1.09001 * 115.55408 * 34.33265 * 24 12 10 42 42 H 1.09004 * 117.49523 * 0.02562 * 25 24 12 43 43 H 1.09002 * 117.49920 * 145.02287 * 25 24 12 44 44 H 1.09006 * 117.49406 * 252.50987 * 26 25 24 45 45 H 1.08994 * 117.50264 * 107.49408 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8440 1.9080 -1.2157 6 6 3.5502 1.6577 0.1183 7 1 4.1803 0.7718 0.1961 8 6 4.0229 2.8615 0.8919 9 8 3.2159 3.6160 1.3924 10 7 5.3425 3.0997 1.0277 11 6 6.3174 2.1886 0.4228 12 6 5.8022 4.2696 1.7802 13 1 4.9404 4.8236 2.1524 14 6 6.6320 5.1713 0.8643 15 7 5.8482 5.5129 -0.3253 16 6 6.3883 6.3166 -1.2936 17 1 7.3923 6.6983 -1.1805 18 6 5.6455 6.6407 -2.4205 19 7 4.4239 6.1711 -2.5609 20 14 6.3824 7.7364 -3.7418 21 1 5.3961 7.9246 -4.8358 22 1 6.7281 9.0559 -3.1545 23 1 7.6090 7.0998 -4.2853 24 6 6.6618 3.8116 2.9601 25 6 6.0935 4.0089 4.3669 26 6 7.2406 4.8933 3.8743 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.7213 2.9434 -1.5337 33 1 3.0093 1.1867 -2.0160 34 1 6.5713 1.4033 1.1348 35 1 5.8886 1.7412 -0.4740 36 1 7.2173 2.7434 0.1574 37 1 7.5393 4.6474 0.5635 38 1 6.8992 6.0836 1.3977 39 1 4.9464 5.1704 -0.4267 40 1 4.0413 5.6018 -1.8751 41 1 7.2698 2.9245 2.7825 42 1 5.1069 4.4647 4.4518 43 1 6.3274 3.2515 5.1150 44 1 8.2293 4.7176 4.2984 45 1 7.0091 5.9312 3.6352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734304653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:05 Heat of formation + Delta-G solvation = 0.107459 kcal Electronic energy + Delta-G solvation = -22960.409639 eV Core-core repulsion = 19785.891662 eV Total energy + Delta-G solvation = -3174.517977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47297 -39.35745 -37.82152 -36.83578 -35.94519 -33.29438 -32.78570 -29.88537 -27.81853 -26.25451 -25.20896 -24.62877 -23.72595 -23.03490 -21.58036 -21.02755 -20.04774 -19.37534 -18.43600 -17.65953 -17.01990 -16.30655 -16.13450 -15.73983 -15.49478 -15.39655 -15.34409 -14.94952 -14.69034 -14.19817 -13.75302 -13.56621 -13.40095 -13.18956 -13.09834 -13.01366 -12.77380 -12.63924 -12.44394 -12.24054 -12.21325 -11.95840 -11.90444 -11.46606 -11.39955 -11.25081 -11.02488 -11.00738 -10.94731 -10.73519 -9.65359 -9.14844 -8.42584 -5.36471 1.42752 1.55126 1.66157 1.82425 1.88718 2.67530 2.78171 2.86448 3.37806 3.41000 3.52684 3.74000 3.79553 3.88155 3.96727 4.00780 4.05291 4.17179 4.21815 4.24053 4.35800 4.45250 4.46811 4.54748 4.68019 4.69669 4.74188 4.75752 4.87151 4.88742 4.92824 4.96029 5.00292 5.12405 5.18438 5.19901 5.21831 5.28068 5.47116 5.50928 5.58425 6.36829 6.42480 7.04147 7.13148 7.94658 8.08689 9.07387 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.006437 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.027547 B = 4348.795663 C = 6419.363713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.112 4.112 4 H 0.085 0.915 5 C -0.149 4.149 6 C -0.185 4.185 7 H 0.157 0.843 8 C 0.531 3.469 9 O -0.594 6.594 10 N -0.592 5.592 11 C 0.078 3.922 12 C 0.169 3.831 13 H 0.060 0.940 14 C 0.155 3.845 15 N -0.753 5.753 16 C -0.335 4.335 17 H 0.069 0.931 18 C -0.105 4.105 19 N -0.970 5.970 20 Si 1.131 2.869 21 H -0.294 1.294 22 H -0.279 1.279 23 H -0.272 1.272 24 C -0.164 4.164 25 C -0.171 4.171 26 C -0.162 4.162 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.356 0.644 40 H 0.237 0.763 41 H 0.128 0.872 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 -15.687 9.341 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C -0.131 4.131 4 H 0.104 0.896 5 C -0.186 4.186 6 C -0.205 4.205 7 H 0.174 0.826 8 C 0.322 3.678 9 O -0.476 6.476 10 N -0.322 5.322 11 C -0.064 4.064 12 C 0.065 3.935 13 H 0.078 0.922 14 C 0.028 3.972 15 N -0.397 5.397 16 C -0.466 4.466 17 H 0.087 0.913 18 C -0.295 4.295 19 N -0.618 5.618 20 Si 0.955 3.045 21 H -0.220 1.220 22 H -0.206 1.206 23 H -0.198 1.198 24 C -0.184 4.184 25 C -0.208 4.208 26 C -0.199 4.199 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.188 0.812 40 H 0.047 0.953 41 H 0.146 0.854 42 H 0.093 0.907 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.503 -14.493 8.181 16.830 hybrid contribution -0.209 -0.101 1.406 1.425 sum 2.294 -14.595 9.587 17.612 Atomic orbital electron populations 1.21752 0.94908 1.02509 1.01588 1.21149 0.96461 0.91179 1.03364 1.22496 0.90570 0.99927 1.00084 0.89636 1.23065 1.02391 1.02119 0.91066 1.22359 0.98293 0.98271 1.01595 0.82573 1.20388 0.81992 0.86158 0.79306 1.90632 1.54861 1.50692 1.51372 1.47645 1.05766 1.26213 1.52608 1.21938 0.92456 0.93239 0.98769 1.20667 0.96070 0.85979 0.90826 0.92186 1.21005 0.93804 0.95500 0.86922 1.42523 1.15617 1.60284 1.21276 1.20392 1.00036 1.25152 1.01033 0.91307 1.27314 0.96109 1.03962 1.02155 1.70995 1.16481 1.37779 1.36549 0.82601 0.74389 0.74324 0.73153 1.21968 1.20568 1.19795 1.22424 1.03293 1.02564 0.90087 1.23032 0.97857 1.03537 0.96338 1.23004 0.99175 0.95650 1.02094 0.93393 0.93088 0.90645 0.89877 0.90319 0.92226 0.84999 0.89319 0.90488 0.91370 0.94650 0.95706 0.81186 0.95295 0.85373 0.90738 0.86341 0.85852 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.87 71.98 0.71 -1.99 16 2 C -0.08 -1.59 6.22 30.59 0.19 -1.40 16 3 C -0.11 -3.11 5.25 -10.80 -0.06 -3.17 16 4 H 0.09 2.91 7.60 -2.38 -0.02 2.89 16 5 C -0.15 -4.57 9.88 30.59 0.30 -4.27 16 6 C -0.18 -5.39 4.52 -11.54 -0.05 -5.45 16 7 H 0.16 3.31 7.26 -2.39 -0.02 3.30 16 8 C 0.53 20.45 7.16 87.66 0.63 21.08 16 9 O -0.59 -28.30 15.59 -3.04 -0.05 -28.35 16 10 N -0.59 -20.42 2.24 -822.59 -1.85 -22.27 16 11 C 0.08 2.02 8.98 127.77 1.15 3.17 16 12 C 0.17 6.18 2.42 44.99 0.11 6.29 16 13 H 0.06 2.66 6.65 -2.39 -0.02 2.65 16 14 C 0.15 6.60 5.27 86.38 0.46 7.05 16 15 N -0.75 -40.91 5.43 -343.47 -1.87 -42.77 16 16 C -0.34 -19.68 9.99 84.03 0.84 -18.84 16 17 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.10 -6.30 5.50 84.86 0.47 -5.83 16 19 N -0.97 -63.81 13.70 21.65 0.30 -63.52 16 20 Si 1.13 53.35 29.92 68.60 2.05 55.41 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 C -0.16 -4.36 5.22 -10.79 -0.06 -4.42 16 25 C -0.17 -4.08 10.18 30.59 0.31 -3.77 16 26 C -0.16 -3.78 9.79 30.59 0.30 -3.48 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.30 7.88 -2.39 -0.02 1.28 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.13 3.17 8.03 -2.39 -0.02 3.15 16 34 H 0.09 1.61 8.07 -2.39 -0.02 1.59 16 35 H 0.08 1.92 6.64 -2.39 -0.02 1.90 16 36 H 0.07 1.91 6.53 -2.39 -0.02 1.89 16 37 H 0.04 1.44 6.88 -2.39 -0.02 1.42 16 38 H 0.03 1.09 7.47 -2.39 -0.02 1.07 16 39 H 0.36 21.02 5.90 -92.71 -0.55 20.48 16 40 H 0.24 16.05 6.77 -92.71 -0.63 15.42 16 41 H 0.13 2.83 7.43 -2.39 -0.02 2.81 16 42 H 0.07 2.09 8.05 -2.38 -0.02 2.07 16 43 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 45 H 0.08 2.19 7.66 -2.39 -0.02 2.17 16 Total: -1.00 -78.20 362.09 4.44 -73.75 By element: Atomic # 1 Polarization: 42.22 SS G_CDS: 0.56 Total: 42.78 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 5.29 Total: -15.03 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -3.42 Total: -128.55 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.35 kcal Atomic # 14 Polarization: 53.35 SS G_CDS: 2.05 Total: 55.41 kcal Total: -78.20 4.44 -73.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734304653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.861 kcal (2) G-P(sol) polarization free energy of solvation -78.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds