Wall clock time and date at job start Tue Mar 31 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 H 1.08997 * 109.47298 * 55.00456 * 3 2 1 5 5 C 1.52997 * 109.47475 * 295.00023 * 3 2 1 6 6 C 1.53005 * 109.46908 * 175.00071 * 3 2 1 7 7 C 1.50707 * 109.47091 * 185.00032 * 6 3 2 8 8 O 1.21277 * 119.99688 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00109 * 180.02562 * 7 6 3 10 10 C 1.48439 * 120.83292 * 359.61377 * 9 7 6 11 11 C 1.53884 * 107.37305 * 132.53432 * 10 9 7 12 12 H 1.09004 * 112.09471 * 182.51216 * 11 10 9 13 13 C 1.54545 * 108.37558 * 306.86285 * 11 10 9 14 14 C 1.54272 * 104.84826 * 89.29441 * 13 11 10 15 15 C 1.54541 * 104.85319 * 0.02562 * 14 13 11 16 16 H 1.09001 * 112.18589 * 146.40492 * 15 14 13 17 17 C 1.47161 * 120.71173 * 180.02562 * 9 7 6 18 18 N 1.48304 * 104.35724 * 24.69801 * 15 14 13 19 19 C 1.36935 * 128.07796 * 139.05912 * 18 15 14 20 20 H 1.08007 * 120.00421 * 195.02828 * 19 18 15 21 21 C 1.38810 * 120.00188 * 15.03251 * 19 18 15 22 22 N 1.31623 * 119.99806 * 9.28728 * 21 19 18 23 23 Si 1.86797 * 120.00231 * 189.28380 * 21 19 18 24 24 H 1.48504 * 109.47079 * 94.21843 * 23 21 19 25 25 H 1.48505 * 109.47194 * 214.21582 * 23 21 19 26 26 H 1.48493 * 109.47399 * 334.21508 * 23 21 19 27 27 H 1.08998 * 109.47479 * 59.99623 * 1 2 3 28 28 H 1.09006 * 109.47238 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47012 * 299.99438 * 1 2 3 30 30 H 1.09003 * 109.47012 * 240.00562 * 2 1 3 31 31 H 1.08998 * 109.47479 * 120.00377 * 2 1 3 32 32 H 1.09005 * 109.47173 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47211 * 300.00486 * 5 3 2 34 34 H 1.09007 * 109.46634 * 60.00379 * 5 3 2 35 35 H 1.09002 * 109.46961 * 65.00383 * 6 3 2 36 36 H 1.08993 * 109.47483 * 305.00302 * 6 3 2 37 37 H 1.09000 * 109.56389 * 13.39913 * 10 9 7 38 38 H 1.08993 * 110.57513 * 252.25116 * 10 9 7 39 39 H 1.08995 * 110.36534 * 208.14130 * 13 11 10 40 40 H 1.09004 * 110.36097 * 330.45283 * 13 11 10 41 41 H 1.09006 * 110.36647 * 241.15649 * 14 13 11 42 42 H 1.09008 * 110.45477 * 118.89778 * 14 13 11 43 43 H 1.08997 * 109.75427 * 107.60875 * 17 9 7 44 44 H 1.08999 * 109.78635 * 346.89905 * 17 9 7 45 45 H 0.97000 * 119.99833 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0569 2.8634 0.2492 8 8 3.2659 3.7827 0.2383 9 7 5.3761 3.1109 0.3719 10 6 6.3597 1.9995 0.3959 11 6 7.4928 2.3675 -0.5781 12 1 8.2410 1.5784 -0.6536 13 6 6.8654 2.7098 -1.9484 14 6 6.5752 4.2236 -1.8833 15 6 7.0542 4.6588 -0.4799 16 1 7.4571 5.6716 -0.4782 17 6 5.8737 4.4904 0.4941 18 7 8.0755 3.6489 -0.1103 19 6 9.2761 3.8520 0.5162 20 1 10.0267 3.0755 0.5100 21 6 9.5284 5.0560 1.1593 22 7 8.5575 5.9288 1.3266 23 14 11.2458 5.4375 1.7873 24 1 11.9855 6.2178 0.7630 25 1 11.1502 6.2300 3.0396 26 1 11.9669 4.1681 2.0587 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.9981 3.1545 -1.3070 33 1 2.0697 1.5876 -2.1491 34 1 0.5488 2.1253 -1.3968 35 1 4.0029 0.9837 -0.7597 36 1 3.8571 0.8801 1.0112 37 1 5.8775 1.0783 0.0688 38 1 6.7646 1.8680 1.3993 39 1 7.5685 2.4925 -2.7524 40 1 5.9399 2.1520 -2.0917 41 1 5.5071 4.4103 -1.9947 42 1 7.1344 4.7522 -2.6554 43 1 6.2096 4.6718 1.5150 44 1 5.0809 5.1929 0.2370 45 1 8.7340 6.7703 1.7757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753305098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:33 Heat of formation + Delta-G solvation = -19.244477 kcal Electronic energy + Delta-G solvation = -23654.059257 eV Core-core repulsion = 20478.702117 eV Total energy + Delta-G solvation = -3175.357140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.02756 -38.15170 -36.09022 -33.66055 -32.35090 -31.07996 -30.22938 -29.26998 -27.70446 -25.92525 -24.25712 -23.78937 -23.13271 -20.22350 -19.72779 -19.37110 -18.38202 -16.97313 -16.07048 -15.73345 -15.10741 -14.86690 -14.66771 -14.43953 -13.75384 -13.70833 -13.38422 -13.01973 -12.86175 -12.68533 -12.30311 -11.95765 -11.89063 -11.80512 -11.62215 -11.52910 -11.25672 -11.05423 -10.88326 -10.83529 -10.64852 -10.52950 -10.51410 -10.32051 -10.03003 -9.84116 -9.65640 -9.54411 -9.08608 -8.76621 -7.99516 -6.84359 -5.84750 -3.20632 3.20492 3.34890 3.40525 3.42594 3.65907 4.40395 4.76662 4.86656 4.91256 5.12692 5.24105 5.29664 5.32247 5.51083 5.59717 5.61984 5.67143 5.71927 5.73541 5.75681 5.83536 5.84592 5.93838 5.96816 6.04028 6.08264 6.19211 6.25733 6.34033 6.42798 6.47984 6.53540 6.60576 6.66615 6.73432 6.81240 6.89165 7.02384 7.32235 7.50569 7.70410 8.12963 8.16273 8.80518 9.04655 9.66845 10.43629 11.27982 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034151 B = 0.004351 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.698999 B = 6434.072305 C = 6477.575117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.075 4.075 4 H 0.075 0.925 5 C -0.152 4.152 6 C -0.135 4.135 7 C 0.506 3.494 8 O -0.558 6.558 9 N -0.595 5.595 10 C 0.096 3.904 11 C 0.133 3.867 12 H 0.076 0.924 13 C -0.121 4.121 14 C -0.136 4.136 15 C 0.168 3.832 16 H 0.117 0.883 17 C 0.112 3.888 18 N -0.585 5.585 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.912 5.912 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -10.684 -4.241 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.094 0.906 5 C -0.209 4.209 6 C -0.175 4.175 7 C 0.294 3.706 8 O -0.438 6.438 9 N -0.327 5.327 10 C -0.029 4.029 11 C 0.024 3.976 12 H 0.094 0.906 13 C -0.160 4.160 14 C -0.175 4.175 15 C 0.061 3.939 16 H 0.135 0.865 17 C -0.011 4.011 18 N -0.306 5.306 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.558 5.558 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.099 -10.012 -4.081 14.795 hybrid contribution 0.961 0.106 0.471 1.075 sum -9.139 -9.906 -3.610 13.953 Atomic orbital electron populations 1.21804 0.95978 1.01140 1.02037 1.21599 0.95929 0.96511 1.01726 1.20895 0.93271 0.95444 0.99745 0.90633 1.21975 1.00594 1.02501 0.95839 1.21756 0.97092 0.95211 1.03471 1.20514 0.82136 0.91126 0.76847 1.90597 1.54297 1.46721 1.52214 1.48566 1.05106 1.08853 1.70195 1.22735 0.90963 0.87924 1.01289 1.21955 0.92625 0.91297 0.91740 0.90550 1.22447 0.98899 0.96900 0.97757 1.22633 0.99391 0.95551 0.99964 1.21903 0.87085 0.96813 0.88111 0.86500 1.22389 0.96454 0.80030 1.02237 1.45186 1.18053 1.00008 1.67371 1.19008 0.89395 1.00693 1.26496 0.90569 1.24845 0.97806 0.98008 0.99348 1.69850 1.29982 1.09570 1.46392 0.86109 0.83648 0.77974 0.78006 1.21614 1.21751 1.20631 0.92453 0.93122 0.92808 0.92102 0.92177 0.90487 0.93666 0.93145 0.89477 0.89624 0.91630 0.91507 0.92707 0.93062 0.92883 0.92936 0.90536 0.91412 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.12 -1.17 5.40 -26.73 -0.14 -1.31 16 3 C -0.07 -0.92 2.04 -90.62 -0.18 -1.11 16 4 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 5 C -0.15 -1.95 8.69 37.16 0.32 -1.63 16 6 C -0.14 -1.79 3.56 -27.88 -0.10 -1.88 16 7 C 0.51 9.00 7.43 -10.98 -0.08 8.92 16 8 O -0.56 -11.57 13.43 5.56 0.07 -11.49 16 9 N -0.60 -11.27 2.26 -170.44 -0.39 -11.65 16 10 C 0.10 1.64 5.91 -2.51 -0.01 1.63 16 11 C 0.13 2.50 4.27 -65.65 -0.28 2.22 16 12 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.12 -2.09 6.19 -25.25 -0.16 -2.24 16 14 C -0.14 -2.65 6.18 -25.26 -0.16 -2.80 16 15 C 0.17 3.83 3.12 -65.62 -0.20 3.62 16 16 H 0.12 3.03 6.36 -51.93 -0.33 2.70 16 17 C 0.11 2.48 5.82 -3.18 -0.02 2.46 16 18 N -0.59 -13.76 2.80 -152.54 -0.43 -14.19 16 19 C -0.23 -5.91 10.37 -15.06 -0.16 -6.07 16 20 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 21 C 0.00 -0.07 5.42 -17.43 -0.09 -0.17 16 22 N -0.91 -25.11 10.43 55.49 0.58 -24.53 16 23 Si 0.91 21.16 29.56 -169.99 -5.03 16.14 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.22 5.95 -51.93 -0.31 0.91 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.58 6.57 -51.92 -0.34 0.24 16 35 H 0.09 1.03 7.61 -51.93 -0.40 0.64 16 36 H 0.09 1.02 8.06 -51.93 -0.42 0.60 16 37 H 0.07 0.88 6.13 -51.93 -0.32 0.57 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.80 7.86 -51.93 -0.41 0.39 16 41 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 42 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 43 H 0.08 1.94 7.84 -51.93 -0.41 1.53 16 44 H 0.07 1.53 7.11 -51.93 -0.37 1.16 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -28.57 339.15 -8.79 -37.37 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.81 Total: 2.62 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.91 Total: 0.63 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.23 Total: -50.37 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.57 -8.79 -37.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753305098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.122 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds