Wall clock time and date at job start Tue Mar 31 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 H 1.08997 * 109.47298 * 55.00456 * 3 2 1 5 5 C 1.52997 * 109.47475 * 295.00023 * 3 2 1 6 6 C 1.53005 * 109.46908 * 175.00071 * 3 2 1 7 7 C 1.50707 * 109.47091 * 185.00032 * 6 3 2 8 8 O 1.21277 * 119.99688 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00109 * 180.02562 * 7 6 3 10 10 C 1.48439 * 120.83292 * 359.61377 * 9 7 6 11 11 C 1.53884 * 107.37305 * 132.53432 * 10 9 7 12 12 H 1.09004 * 112.09471 * 182.51216 * 11 10 9 13 13 C 1.54545 * 108.37558 * 306.86285 * 11 10 9 14 14 C 1.54272 * 104.84826 * 89.29441 * 13 11 10 15 15 C 1.54541 * 104.85319 * 0.02562 * 14 13 11 16 16 H 1.09001 * 112.18589 * 146.40492 * 15 14 13 17 17 C 1.47161 * 120.71173 * 180.02562 * 9 7 6 18 18 N 1.48304 * 104.35724 * 24.69801 * 15 14 13 19 19 C 1.36935 * 128.07796 * 139.05912 * 18 15 14 20 20 H 1.08007 * 120.00421 * 195.02828 * 19 18 15 21 21 C 1.38810 * 120.00188 * 15.03251 * 19 18 15 22 22 N 1.31623 * 119.99806 * 9.28728 * 21 19 18 23 23 Si 1.86797 * 120.00231 * 189.28380 * 21 19 18 24 24 H 1.48504 * 109.47079 * 94.21843 * 23 21 19 25 25 H 1.48505 * 109.47194 * 214.21582 * 23 21 19 26 26 H 1.48493 * 109.47399 * 334.21508 * 23 21 19 27 27 H 1.08998 * 109.47479 * 59.99623 * 1 2 3 28 28 H 1.09006 * 109.47238 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47012 * 299.99438 * 1 2 3 30 30 H 1.09003 * 109.47012 * 240.00562 * 2 1 3 31 31 H 1.08998 * 109.47479 * 120.00377 * 2 1 3 32 32 H 1.09005 * 109.47173 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47211 * 300.00486 * 5 3 2 34 34 H 1.09007 * 109.46634 * 60.00379 * 5 3 2 35 35 H 1.09002 * 109.46961 * 65.00383 * 6 3 2 36 36 H 1.08993 * 109.47483 * 305.00302 * 6 3 2 37 37 H 1.09000 * 109.56389 * 13.39913 * 10 9 7 38 38 H 1.08993 * 110.57513 * 252.25116 * 10 9 7 39 39 H 1.08995 * 110.36534 * 208.14130 * 13 11 10 40 40 H 1.09004 * 110.36097 * 330.45283 * 13 11 10 41 41 H 1.09006 * 110.36647 * 241.15649 * 14 13 11 42 42 H 1.09008 * 110.45477 * 118.89778 * 14 13 11 43 43 H 1.08997 * 109.75427 * 107.60875 * 17 9 7 44 44 H 1.08999 * 109.78635 * 346.89905 * 17 9 7 45 45 H 0.97000 * 119.99833 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0569 2.8634 0.2492 8 8 3.2659 3.7827 0.2383 9 7 5.3761 3.1109 0.3719 10 6 6.3597 1.9995 0.3959 11 6 7.4928 2.3675 -0.5781 12 1 8.2410 1.5784 -0.6536 13 6 6.8654 2.7098 -1.9484 14 6 6.5752 4.2236 -1.8833 15 6 7.0542 4.6588 -0.4799 16 1 7.4571 5.6716 -0.4782 17 6 5.8737 4.4904 0.4941 18 7 8.0755 3.6489 -0.1103 19 6 9.2761 3.8520 0.5162 20 1 10.0267 3.0755 0.5100 21 6 9.5284 5.0560 1.1593 22 7 8.5575 5.9288 1.3266 23 14 11.2458 5.4375 1.7873 24 1 11.9855 6.2178 0.7630 25 1 11.1502 6.2300 3.0396 26 1 11.9669 4.1681 2.0587 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.9981 3.1545 -1.3070 33 1 2.0697 1.5876 -2.1491 34 1 0.5488 2.1253 -1.3968 35 1 4.0029 0.9837 -0.7597 36 1 3.8571 0.8801 1.0112 37 1 5.8775 1.0783 0.0688 38 1 6.7646 1.8680 1.3993 39 1 7.5685 2.4925 -2.7524 40 1 5.9399 2.1520 -2.0917 41 1 5.5071 4.4103 -1.9947 42 1 7.1344 4.7522 -2.6554 43 1 6.2096 4.6718 1.5150 44 1 5.0809 5.1929 0.2370 45 1 8.7340 6.7703 1.7757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753305098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:33 Heat of formation + Delta-G solvation = -34.102082 kcal Electronic energy + Delta-G solvation = -23654.703531 eV Core-core repulsion = 20478.702117 eV Total energy + Delta-G solvation = -3176.001414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52992 -39.60798 -37.13738 -35.34299 -34.12682 -32.47999 -31.40137 -30.99226 -28.87615 -27.45189 -25.60698 -25.43357 -24.40141 -21.47177 -21.22777 -20.77644 -19.92391 -18.53208 -17.68557 -17.08109 -16.60196 -16.45376 -15.96451 -15.70956 -15.33971 -14.84662 -14.66058 -14.54641 -14.41332 -13.93015 -13.55260 -13.40750 -13.27879 -13.23089 -12.87341 -12.74672 -12.69756 -12.63736 -12.54369 -12.13665 -11.97022 -11.79922 -11.70777 -11.48373 -11.44840 -11.37863 -11.33879 -11.11703 -10.77582 -10.45148 -9.65490 -8.68974 -7.84396 -5.20294 1.48681 1.49762 1.57993 1.81247 2.19749 2.51688 3.35226 3.50512 3.66550 3.89861 4.04603 4.11221 4.14899 4.25084 4.30673 4.35237 4.44418 4.50064 4.60194 4.66746 4.75351 4.76630 4.79044 4.88108 4.90622 4.96562 5.00937 5.09031 5.11308 5.15756 5.19676 5.23335 5.28248 5.33435 5.38651 5.43305 5.55016 5.56936 5.59900 5.65640 5.87464 6.23754 6.71136 7.06375 7.36989 7.74135 8.53027 9.27143 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034151 B = 0.004351 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.698999 B = 6434.072305 C = 6477.575117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.073 4.073 4 H 0.051 0.949 5 C -0.149 4.149 6 C -0.127 4.127 7 C 0.501 3.499 8 O -0.593 6.593 9 N -0.599 5.599 10 C 0.100 3.900 11 C 0.126 3.874 12 H 0.095 0.905 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.166 3.834 16 H 0.074 0.926 17 C 0.129 3.871 18 N -0.606 5.606 19 C -0.230 4.230 20 H 0.084 0.916 21 C -0.059 4.059 22 N -0.940 5.940 23 Si 0.971 3.029 24 H -0.292 1.292 25 H -0.302 1.302 26 H -0.267 1.267 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.033 0.967 44 H 0.051 0.949 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 -14.420 -5.484 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.092 4.092 4 H 0.070 0.930 5 C -0.206 4.206 6 C -0.166 4.166 7 C 0.291 3.709 8 O -0.475 6.475 9 N -0.331 5.331 10 C -0.023 4.023 11 C 0.019 3.981 12 H 0.113 0.887 13 C -0.147 4.147 14 C -0.167 4.167 15 C 0.058 3.942 16 H 0.092 0.908 17 C 0.004 3.996 18 N -0.328 5.328 19 C -0.358 4.358 20 H 0.102 0.898 21 C -0.253 4.253 22 N -0.588 5.588 23 Si 0.801 3.199 24 H -0.220 1.220 25 H -0.229 1.229 26 H -0.191 1.191 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.467 -13.808 -5.342 18.132 hybrid contribution 1.006 1.277 0.848 1.833 sum -9.462 -12.531 -4.494 16.332 Atomic orbital electron populations 1.21817 0.95660 1.02009 1.01638 1.21549 0.96194 0.94324 1.02975 1.20886 0.92743 0.97135 0.98461 0.93042 1.21924 1.01290 1.00586 0.96840 1.21832 0.97517 0.91548 1.05699 1.21458 0.81079 0.93001 0.75333 1.90596 1.55046 1.48521 1.53327 1.48603 1.06191 1.07686 1.70650 1.22784 0.90394 0.88939 1.00210 1.22270 0.93493 0.89733 0.92642 0.88687 1.22391 1.00433 0.94806 0.97114 1.22500 0.99098 0.97696 0.97407 1.21696 0.87110 0.95085 0.90300 0.90769 1.21833 0.95788 0.82371 0.99559 1.45383 1.17730 1.02301 1.67420 1.19354 0.90589 1.00540 1.25358 0.89844 1.25565 1.00737 0.98392 1.00617 1.70061 1.31483 1.09581 1.47667 0.85165 0.80195 0.77854 0.76674 1.21963 1.22898 1.19130 0.92635 0.91605 0.93543 0.90548 0.91145 0.94044 0.92030 0.92252 0.86624 0.87429 0.86467 0.93076 0.91237 0.90258 0.92922 0.93011 0.94816 0.93023 0.94566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.67 71.98 0.70 -1.60 16 2 C -0.11 -1.74 5.40 30.59 0.17 -1.58 16 3 C -0.07 -1.62 2.04 -10.79 -0.02 -1.64 16 4 H 0.05 1.38 7.95 -2.39 -0.02 1.37 16 5 C -0.15 -3.52 8.69 71.98 0.63 -2.90 16 6 C -0.13 -2.85 3.56 29.85 0.11 -2.74 16 7 C 0.50 17.14 7.43 87.66 0.65 17.79 16 8 O -0.59 -24.88 13.43 -3.02 -0.04 -24.92 16 9 N -0.60 -22.14 2.26 -811.56 -1.83 -23.98 16 10 C 0.10 3.14 5.91 86.30 0.51 3.65 16 11 C 0.13 4.39 4.27 45.46 0.19 4.58 16 12 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 13 C -0.11 -3.37 6.19 31.55 0.20 -3.18 16 14 C -0.13 -4.88 6.18 31.55 0.20 -4.68 16 15 C 0.17 7.78 3.12 45.49 0.14 7.92 16 16 H 0.07 4.11 6.36 -2.39 -0.02 4.09 16 17 C 0.13 5.99 5.82 86.58 0.50 6.50 16 18 N -0.61 -28.47 2.80 -636.50 -1.79 -30.26 16 19 C -0.23 -11.96 10.37 84.03 0.87 -11.09 16 20 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 21 C -0.06 -3.21 5.42 84.86 0.46 -2.75 16 22 N -0.94 -54.46 10.43 21.65 0.23 -54.23 16 23 Si 0.97 44.44 29.56 68.60 2.03 46.46 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H 0.05 0.84 6.56 -2.39 -0.02 0.82 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 1.28 5.95 -2.38 -0.01 1.27 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.26 6.57 -2.38 -0.02 1.24 16 35 H 0.12 2.02 7.61 -2.39 -0.02 2.00 16 36 H 0.11 2.03 8.06 -2.39 -0.02 2.01 16 37 H 0.12 2.48 6.13 -2.39 -0.01 2.47 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 2.05 7.86 -2.38 -0.02 2.03 16 41 H 0.05 1.99 7.84 -2.38 -0.02 1.97 16 42 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.03 1.82 7.84 -2.39 -0.02 1.80 16 44 H 0.05 2.49 7.11 -2.39 -0.02 2.48 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -66.13 339.15 4.84 -61.30 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.95 Total: 17.34 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.29 Total: 8.28 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.39 Total: -108.47 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.04 Total: -24.92 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.13 4.84 -61.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753305098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.197 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds