Wall clock time and date at job start Tue Mar 31 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.09000 * 109.46905 * 305.00066 * 3 2 1 5 5 C 1.52998 * 109.46979 * 64.99841 * 3 2 1 6 6 C 1.52998 * 109.47145 * 184.99803 * 3 2 1 7 7 C 1.50695 * 109.47110 * 175.00102 * 6 3 2 8 8 O 1.21289 * 120.00039 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00326 * 180.02562 * 7 6 3 10 10 C 1.47162 * 120.71627 * 179.97438 * 9 7 6 11 11 C 1.53881 * 108.03240 * 132.73475 * 10 9 7 12 12 H 1.09010 * 112.09625 * 181.91485 * 11 10 9 13 13 C 1.54542 * 108.37271 * 306.25310 * 11 10 9 14 14 C 1.54827 * 104.74404 * 89.16980 * 13 11 10 15 15 C 1.54550 * 104.74433 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.68166 * 146.80338 * 15 14 13 17 17 C 1.47162 * 120.70564 * 359.97438 * 9 7 6 18 18 N 1.48306 * 107.20904 * 58.36392 * 11 10 9 19 19 C 1.36940 * 128.07917 * 106.09414 * 18 11 10 20 20 H 1.07998 * 119.99888 * 165.13522 * 19 18 11 21 21 C 1.38813 * 119.99801 * 345.13927 * 19 18 11 22 22 N 1.31614 * 120.00163 * 350.71818 * 21 19 18 23 23 Si 1.86800 * 119.99833 * 170.72098 * 21 19 18 24 24 H 1.48498 * 109.46912 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.46964 * 299.99966 * 23 21 19 26 26 H 1.48496 * 109.47049 * 59.99894 * 23 21 19 27 27 H 1.08996 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46859 * 300.00165 * 1 2 3 29 29 H 1.09004 * 109.46892 * 59.99924 * 1 2 3 30 30 H 1.08998 * 109.46859 * 239.99835 * 2 1 3 31 31 H 1.09004 * 109.46892 * 120.00076 * 2 1 3 32 32 H 1.09000 * 109.47362 * 299.99830 * 5 3 2 33 33 H 1.08998 * 109.47627 * 59.99788 * 5 3 2 34 34 H 1.08996 * 109.47156 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46979 * 55.00239 * 6 3 2 36 36 H 1.09001 * 109.47238 * 294.99884 * 6 3 2 37 37 H 1.09008 * 109.74654 * 13.10395 * 10 9 7 38 38 H 1.08999 * 109.79524 * 252.39815 * 10 9 7 39 39 H 1.09004 * 110.36967 * 208.14001 * 13 11 10 40 40 H 1.09008 * 110.36410 * 330.45615 * 13 11 10 41 41 H 1.08996 * 110.31050 * 241.25204 * 14 13 11 42 42 H 1.09005 * 110.61026 * 118.91357 * 14 13 11 43 43 H 1.08998 * 109.75646 * 346.89919 * 17 9 7 44 44 H 1.09006 * 109.74942 * 107.63263 * 17 9 7 45 45 H 0.96994 * 120.00282 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 6 4.0570 2.8632 -0.2492 8 8 3.2661 3.7827 -0.2373 9 7 5.3761 3.1107 -0.3728 10 6 5.8739 4.4902 -0.4950 11 6 7.0543 4.6586 0.4778 12 1 7.4545 5.6725 0.4653 13 6 6.5876 4.2330 1.8882 14 6 6.8811 2.7145 1.9589 15 6 7.4975 2.3686 0.5845 16 1 8.2442 1.5770 0.6459 17 6 6.3495 2.0071 -0.3884 18 7 8.0752 3.6485 0.1078 19 6 9.2701 3.8499 -0.5301 20 1 10.0217 3.0744 -0.5262 21 6 9.5152 5.0508 -1.1818 22 7 8.5418 5.9215 -1.3452 23 14 11.2266 5.4310 -1.8268 24 1 11.2248 6.7656 -2.4781 25 1 12.1920 5.4316 -0.6985 26 1 11.6231 4.3980 -2.8171 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5490 2.1253 1.3969 33 1 2.0698 1.5875 2.1492 34 1 1.9982 3.1543 1.3072 35 1 3.8571 0.8800 -1.0113 36 1 4.0030 0.9836 0.7597 37 1 5.0808 5.1921 -0.2369 38 1 6.2090 4.6726 -1.5160 39 1 7.1526 4.7673 2.6521 40 1 5.5198 4.4178 2.0064 41 1 5.9569 2.1572 2.1114 42 1 7.5903 2.4975 2.7577 43 1 5.8675 1.0860 -0.0607 44 1 6.7443 1.8785 -1.3963 45 1 8.7130 6.7604 -1.8009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753305099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:37 Heat of formation + Delta-G solvation = -19.820476 kcal Electronic energy + Delta-G solvation = -23653.465811 eV Core-core repulsion = 20478.083694 eV Total energy + Delta-G solvation = -3175.382117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.04114 -38.13430 -36.08967 -33.71684 -32.35521 -31.06574 -30.20545 -29.25357 -27.69860 -25.90256 -24.26656 -23.80634 -23.14097 -20.23107 -19.74098 -19.36861 -18.37333 -16.97393 -16.07314 -15.73535 -15.10919 -14.86533 -14.66578 -14.43759 -13.75551 -13.71359 -13.38607 -13.00482 -12.87192 -12.67375 -12.30335 -11.96689 -11.88582 -11.79143 -11.61558 -11.52881 -11.25664 -11.05673 -10.86778 -10.83726 -10.64489 -10.52883 -10.51364 -10.33175 -10.04437 -9.85117 -9.65019 -9.55518 -9.08472 -8.75525 -7.98755 -6.83523 -5.84361 -3.20156 3.19893 3.35392 3.40757 3.41676 3.68624 4.40870 4.78060 4.86766 4.91335 5.13195 5.25182 5.29599 5.32307 5.51132 5.59846 5.60866 5.67070 5.71993 5.73505 5.75842 5.83519 5.84365 5.93759 5.96379 6.04144 6.08378 6.19449 6.25646 6.34634 6.42366 6.48022 6.53060 6.60621 6.67307 6.73061 6.81274 6.89615 7.04108 7.32627 7.50545 7.70495 8.13569 8.17844 8.80521 9.04923 9.67212 10.43972 11.28260 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033886 B = 0.004358 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.108223 B = 6423.657993 C = 6468.345951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.075 4.075 4 H 0.075 0.925 5 C -0.152 4.152 6 C -0.135 4.135 7 C 0.505 3.495 8 O -0.558 6.558 9 N -0.593 5.593 10 C 0.112 3.888 11 C 0.167 3.833 12 H 0.117 0.883 13 C -0.135 4.135 14 C -0.121 4.121 15 C 0.133 3.867 16 H 0.077 0.923 17 C 0.094 3.906 18 N -0.585 5.585 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.913 5.913 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 -10.578 4.315 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.094 0.906 5 C -0.209 4.209 6 C -0.175 4.175 7 C 0.293 3.707 8 O -0.438 6.438 9 N -0.325 5.325 10 C -0.011 4.011 11 C 0.060 3.940 12 H 0.135 0.865 13 C -0.174 4.174 14 C -0.160 4.160 15 C 0.025 3.975 16 H 0.095 0.905 17 C -0.032 4.032 18 N -0.306 5.306 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.558 5.558 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.076 -9.892 4.152 14.718 hybrid contribution 0.962 0.082 -0.497 1.086 sum -9.114 -9.810 3.655 13.880 Atomic orbital electron populations 1.21804 0.95977 1.01141 1.02037 1.21600 0.95930 0.96510 1.01728 1.20894 0.93266 0.95447 0.99747 0.90630 1.21973 1.00599 1.02502 0.95840 1.21752 0.97094 0.95201 1.03481 1.20533 0.82173 0.91134 0.76848 1.90599 1.54344 1.46700 1.52148 1.48249 1.05118 1.08932 1.70173 1.22391 0.96417 0.79975 1.02306 1.21882 0.87163 0.96868 0.88107 0.86535 1.22708 0.99362 0.95483 0.99882 1.22530 0.98916 0.96847 0.97709 1.22127 0.92522 0.91256 0.91642 0.90471 1.22692 0.91230 0.88054 1.01217 1.45181 1.18522 1.00145 1.66767 1.18948 0.89777 1.00902 1.26070 0.90643 1.24838 0.97799 0.98019 0.99295 1.69826 1.30056 1.09868 1.46090 0.86207 0.83700 0.77323 0.78525 1.21598 1.21173 1.21126 0.93120 0.92448 0.92812 0.92177 0.92099 0.93141 0.93663 0.90487 0.89617 0.89463 0.91440 0.90414 0.92855 0.92882 0.93073 0.92660 0.91698 0.91739 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.12 -1.17 5.40 -26.73 -0.14 -1.32 16 3 C -0.07 -0.93 2.04 -90.62 -0.18 -1.11 16 4 H 0.08 1.06 7.96 -51.93 -0.41 0.65 16 5 C -0.15 -1.95 8.69 37.16 0.32 -1.63 16 6 C -0.14 -1.79 3.55 -27.89 -0.10 -1.89 16 7 C 0.51 9.01 7.42 -10.99 -0.08 8.93 16 8 O -0.56 -11.57 13.43 5.55 0.07 -11.49 16 9 N -0.59 -11.26 2.28 -170.98 -0.39 -11.65 16 10 C 0.11 2.49 5.83 -3.22 -0.02 2.47 16 11 C 0.17 3.80 3.09 -65.67 -0.20 3.60 16 12 H 0.12 3.02 6.35 -51.92 -0.33 2.69 16 13 C -0.14 -2.62 6.23 -24.96 -0.16 -2.78 16 14 C -0.12 -2.09 6.24 -24.95 -0.16 -2.24 16 15 C 0.13 2.52 4.32 -65.20 -0.28 2.23 16 16 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.09 1.61 5.86 -2.75 -0.02 1.59 16 18 N -0.59 -13.77 2.79 -152.09 -0.42 -14.20 16 19 C -0.23 -5.95 10.37 -15.06 -0.16 -6.10 16 20 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 21 C 0.00 -0.06 5.42 -17.43 -0.09 -0.15 16 22 N -0.91 -25.11 10.35 55.49 0.57 -24.53 16 23 Si 0.91 21.15 29.56 -169.99 -5.03 16.13 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.22 5.95 -51.93 -0.31 0.91 16 35 H 0.09 1.02 8.06 -51.93 -0.42 0.61 16 36 H 0.09 1.04 7.59 -51.93 -0.39 0.64 16 37 H 0.07 1.52 7.11 -51.92 -0.37 1.16 16 38 H 0.08 1.97 7.78 -51.93 -0.40 1.57 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.02 7.86 -51.92 -0.41 0.61 16 41 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.88 6.09 -51.93 -0.32 0.57 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -28.53 339.04 -8.79 -37.32 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.80 Total: 2.71 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.91 Total: 0.60 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.24 Total: -50.37 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.53 -8.79 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753305099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.504 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds