Wall clock time and date at job start Tue Mar 31 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.09000 * 109.46905 * 305.00066 * 3 2 1 5 5 C 1.52998 * 109.46979 * 64.99841 * 3 2 1 6 6 C 1.52998 * 109.47145 * 184.99803 * 3 2 1 7 7 C 1.50695 * 109.47110 * 175.00102 * 6 3 2 8 8 O 1.21289 * 120.00039 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00326 * 180.02562 * 7 6 3 10 10 C 1.47162 * 120.71627 * 179.97438 * 9 7 6 11 11 C 1.53881 * 108.03240 * 132.73475 * 10 9 7 12 12 H 1.09010 * 112.09625 * 181.91485 * 11 10 9 13 13 C 1.54542 * 108.37271 * 306.25310 * 11 10 9 14 14 C 1.54827 * 104.74404 * 89.16980 * 13 11 10 15 15 C 1.54550 * 104.74433 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.68166 * 146.80338 * 15 14 13 17 17 C 1.47162 * 120.70564 * 359.97438 * 9 7 6 18 18 N 1.48306 * 107.20904 * 58.36392 * 11 10 9 19 19 C 1.36940 * 128.07917 * 106.09414 * 18 11 10 20 20 H 1.07998 * 119.99888 * 165.13522 * 19 18 11 21 21 C 1.38813 * 119.99801 * 345.13927 * 19 18 11 22 22 N 1.31614 * 120.00163 * 350.71818 * 21 19 18 23 23 Si 1.86800 * 119.99833 * 170.72098 * 21 19 18 24 24 H 1.48498 * 109.46912 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.46964 * 299.99966 * 23 21 19 26 26 H 1.48496 * 109.47049 * 59.99894 * 23 21 19 27 27 H 1.08996 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46859 * 300.00165 * 1 2 3 29 29 H 1.09004 * 109.46892 * 59.99924 * 1 2 3 30 30 H 1.08998 * 109.46859 * 239.99835 * 2 1 3 31 31 H 1.09004 * 109.46892 * 120.00076 * 2 1 3 32 32 H 1.09000 * 109.47362 * 299.99830 * 5 3 2 33 33 H 1.08998 * 109.47627 * 59.99788 * 5 3 2 34 34 H 1.08996 * 109.47156 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46979 * 55.00239 * 6 3 2 36 36 H 1.09001 * 109.47238 * 294.99884 * 6 3 2 37 37 H 1.09008 * 109.74654 * 13.10395 * 10 9 7 38 38 H 1.08999 * 109.79524 * 252.39815 * 10 9 7 39 39 H 1.09004 * 110.36967 * 208.14001 * 13 11 10 40 40 H 1.09008 * 110.36410 * 330.45615 * 13 11 10 41 41 H 1.08996 * 110.31050 * 241.25204 * 14 13 11 42 42 H 1.09005 * 110.61026 * 118.91357 * 14 13 11 43 43 H 1.08998 * 109.75646 * 346.89919 * 17 9 7 44 44 H 1.09006 * 109.74942 * 107.63263 * 17 9 7 45 45 H 0.96994 * 120.00282 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 6 4.0570 2.8632 -0.2492 8 8 3.2661 3.7827 -0.2373 9 7 5.3761 3.1107 -0.3728 10 6 5.8739 4.4902 -0.4950 11 6 7.0543 4.6586 0.4778 12 1 7.4545 5.6725 0.4653 13 6 6.5876 4.2330 1.8882 14 6 6.8811 2.7145 1.9589 15 6 7.4975 2.3686 0.5845 16 1 8.2442 1.5770 0.6459 17 6 6.3495 2.0071 -0.3884 18 7 8.0752 3.6485 0.1078 19 6 9.2701 3.8499 -0.5301 20 1 10.0217 3.0744 -0.5262 21 6 9.5152 5.0508 -1.1818 22 7 8.5418 5.9215 -1.3452 23 14 11.2266 5.4310 -1.8268 24 1 11.2248 6.7656 -2.4781 25 1 12.1920 5.4316 -0.6985 26 1 11.6231 4.3980 -2.8171 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5490 2.1253 1.3969 33 1 2.0698 1.5875 2.1492 34 1 1.9982 3.1543 1.3072 35 1 3.8571 0.8800 -1.0113 36 1 4.0030 0.9836 0.7597 37 1 5.0808 5.1921 -0.2369 38 1 6.2090 4.6726 -1.5160 39 1 7.1526 4.7673 2.6521 40 1 5.5198 4.4178 2.0064 41 1 5.9569 2.1572 2.1114 42 1 7.5903 2.4975 2.7577 43 1 5.8675 1.0860 -0.0607 44 1 6.7443 1.8785 -1.3963 45 1 8.7130 6.7604 -1.8009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753305099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:37 Heat of formation + Delta-G solvation = -34.631088 kcal Electronic energy + Delta-G solvation = -23654.108048 eV Core-core repulsion = 20478.083694 eV Total energy + Delta-G solvation = -3176.024353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54463 -39.59396 -37.13974 -35.39180 -34.14269 -32.45631 -31.39142 -30.97558 -28.86869 -27.43426 -25.61100 -25.45729 -24.41238 -21.47999 -21.24069 -20.77426 -19.91998 -18.53078 -17.69133 -17.08605 -16.60419 -16.45323 -15.97145 -15.70994 -15.34008 -14.85159 -14.66359 -14.54170 -14.41151 -13.93546 -13.53922 -13.40993 -13.28631 -13.21394 -12.85526 -12.74685 -12.69676 -12.62641 -12.55683 -12.13877 -12.00870 -11.79718 -11.70775 -11.48622 -11.46289 -11.37294 -11.34025 -11.12818 -10.76493 -10.44657 -9.65022 -8.68016 -7.84038 -5.19864 1.49014 1.50741 1.56883 1.80292 2.22165 2.52094 3.35327 3.51103 3.67951 3.89610 4.04390 4.09280 4.14989 4.25514 4.30561 4.33891 4.43951 4.49948 4.59948 4.66562 4.75370 4.76427 4.78905 4.88101 4.90554 4.96501 5.00978 5.08743 5.11460 5.16185 5.19749 5.23327 5.28322 5.34108 5.38555 5.43419 5.55070 5.56814 5.59825 5.65619 5.87950 6.24100 6.72451 7.06548 7.36654 7.74486 8.53325 9.27187 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033886 B = 0.004358 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.108223 B = 6423.657993 C = 6468.345951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.073 4.073 4 H 0.051 0.949 5 C -0.149 4.149 6 C -0.127 4.127 7 C 0.500 3.500 8 O -0.592 6.592 9 N -0.597 5.597 10 C 0.129 3.871 11 C 0.165 3.835 12 H 0.074 0.926 13 C -0.127 4.127 14 C -0.108 4.108 15 C 0.126 3.874 16 H 0.096 0.904 17 C 0.098 3.902 18 N -0.607 5.607 19 C -0.232 4.232 20 H 0.083 0.917 21 C -0.058 4.058 22 N -0.940 5.940 23 Si 0.972 3.028 24 H -0.301 1.301 25 H -0.280 1.280 26 H -0.278 1.278 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.051 0.949 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.047 0.953 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 -14.246 5.579 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.092 4.092 4 H 0.070 0.930 5 C -0.206 4.206 6 C -0.166 4.166 7 C 0.291 3.709 8 O -0.474 6.474 9 N -0.329 5.329 10 C 0.004 3.996 11 C 0.057 3.943 12 H 0.092 0.908 13 C -0.166 4.166 14 C -0.147 4.147 15 C 0.019 3.981 16 H 0.114 0.886 17 C -0.026 4.026 18 N -0.328 5.328 19 C -0.361 4.361 20 H 0.101 0.899 21 C -0.252 4.252 22 N -0.588 5.588 23 Si 0.801 3.199 24 H -0.228 1.228 25 H -0.207 1.207 26 H -0.204 1.204 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.134 0.866 44 H 0.066 0.934 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.454 -13.618 5.435 18.007 hybrid contribution 1.011 1.229 -0.882 1.820 sum -9.443 -12.389 4.552 16.228 Atomic orbital electron populations 1.21817 0.95649 1.02011 1.01643 1.21551 0.96203 0.94324 1.02970 1.20885 0.92717 0.97141 0.98476 0.93035 1.21922 1.01299 1.00591 0.96829 1.21830 0.97540 0.91539 1.05694 1.21475 0.81107 0.93012 0.75332 1.90598 1.55075 1.48493 1.53250 1.48279 1.06196 1.07760 1.70644 1.21836 0.95778 0.82295 0.99642 1.21683 0.87156 0.95123 0.90305 0.90787 1.22578 0.99122 0.97632 0.97294 1.22473 1.00471 0.94756 0.97024 1.22444 0.93375 0.89710 0.92550 0.88641 1.22729 0.90694 0.89093 1.00082 1.45380 1.18206 1.02429 1.66822 1.19308 0.90978 1.00777 1.25020 0.89897 1.25561 1.00728 0.98389 1.00559 1.70042 1.31534 1.09848 1.47330 0.85258 0.80214 0.76455 0.77961 1.22793 1.20672 1.20380 0.91604 0.92618 0.93548 0.91163 0.90543 0.92241 0.92025 0.94033 0.87455 0.86605 0.93019 0.94703 0.92901 0.92873 0.90261 0.91167 0.86563 0.93436 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.67 71.98 0.70 -1.60 16 2 C -0.11 -1.75 5.40 30.60 0.17 -1.59 16 3 C -0.07 -1.62 2.04 -10.80 -0.02 -1.64 16 4 H 0.05 1.39 7.96 -2.39 -0.02 1.37 16 5 C -0.15 -3.52 8.69 71.98 0.63 -2.90 16 6 C -0.13 -2.86 3.55 29.85 0.11 -2.76 16 7 C 0.50 17.15 7.42 87.66 0.65 17.80 16 8 O -0.59 -24.86 13.43 -3.06 -0.04 -24.90 16 9 N -0.60 -22.14 2.28 -813.25 -1.86 -24.00 16 10 C 0.13 6.00 5.83 86.55 0.50 6.50 16 11 C 0.17 7.74 3.09 45.47 0.14 7.88 16 12 H 0.07 4.09 6.35 -2.38 -0.02 4.08 16 13 C -0.13 -4.84 6.23 31.74 0.20 -4.64 16 14 C -0.11 -3.37 6.24 31.75 0.20 -3.17 16 15 C 0.13 4.43 4.32 45.78 0.20 4.63 16 16 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 17 C 0.10 3.10 5.86 86.86 0.51 3.61 16 18 N -0.61 -28.52 2.79 -635.11 -1.77 -30.30 16 19 C -0.23 -12.11 10.37 84.03 0.87 -11.24 16 20 H 0.08 4.11 7.85 -2.91 -0.02 4.08 16 21 C -0.06 -3.17 5.42 84.86 0.46 -2.71 16 22 N -0.94 -54.40 10.35 21.65 0.22 -54.18 16 23 Si 0.97 44.42 29.56 68.60 2.03 46.45 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.84 6.56 -2.39 -0.02 0.83 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.06 1.26 6.56 -2.39 -0.02 1.24 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.28 5.95 -2.39 -0.01 1.27 16 35 H 0.11 2.04 8.06 -2.39 -0.02 2.03 16 36 H 0.12 2.04 7.59 -2.39 -0.02 2.02 16 37 H 0.05 2.49 7.11 -2.38 -0.02 2.48 16 38 H 0.03 1.89 7.78 -2.39 -0.02 1.87 16 39 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.05 2.00 7.86 -2.38 -0.02 1.98 16 41 H 0.08 2.05 7.87 -2.39 -0.02 2.03 16 42 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.12 2.50 6.09 -2.39 -0.01 2.48 16 44 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -65.98 339.04 4.83 -61.15 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.95 Total: 17.60 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.30 Total: 8.18 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.41 Total: -108.48 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.98 4.83 -61.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753305099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.518 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds