Wall clock time and date at job start Tue Mar 31 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50707 * 119.99576 * 2 1 4 4 C 1.32990 * 120.00220 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99862 * 20.50893 * 4 2 1 6 6 O 1.21616 * 119.99827 * 9.12813 * 5 4 2 7 7 N 1.34773 * 119.99780 * 189.13162 * 5 4 2 8 8 C 1.46925 * 120.63198 * 354.19039 * 7 5 4 9 9 C 1.53198 * 108.77471 * 233.63092 * 8 7 5 10 10 C 1.53041 * 109.31239 * 305.36508 * 9 8 7 11 11 C 1.53036 * 109.52700 * 61.37432 * 10 9 8 12 12 H 1.08998 * 109.50360 * 58.57926 * 11 10 9 13 13 C 1.53001 * 109.49649 * 178.67919 * 11 10 9 14 14 C 1.53001 * 109.47014 * 184.99667 * 13 11 10 15 15 N 1.46504 * 109.46959 * 179.97438 * 14 13 11 16 16 C 1.36935 * 119.99900 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99942 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31610 * 120.00212 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99807 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46710 * 89.99954 * 20 18 16 22 22 H 1.48499 * 109.47100 * 209.99855 * 20 18 16 23 23 H 1.48494 * 109.47350 * 330.00302 * 20 18 16 24 24 C 1.46932 * 120.62950 * 174.21484 * 7 5 4 25 25 H 1.09004 * 109.46847 * 182.23357 * 1 2 3 26 26 H 1.08997 * 109.47047 * 302.23077 * 1 2 3 27 27 H 1.09004 * 109.47173 * 62.23687 * 1 2 3 28 28 H 1.08999 * 109.47284 * 270.00065 * 3 2 1 29 29 H 1.08997 * 109.46984 * 30.00429 * 3 2 1 30 30 H 1.08997 * 109.46699 * 150.00055 * 3 2 1 31 31 H 1.08002 * 120.00052 * 200.49961 * 4 2 1 32 32 H 1.09001 * 109.58999 * 113.84783 * 8 7 5 33 33 H 1.08995 * 109.70526 * 353.48723 * 8 7 5 34 34 H 1.09007 * 109.49836 * 185.41206 * 9 8 7 35 35 H 1.09000 * 109.52295 * 65.33362 * 9 8 7 36 36 H 1.08997 * 109.45607 * 181.38957 * 10 9 8 37 37 H 1.08997 * 109.45700 * 301.35482 * 10 9 8 38 38 H 1.08997 * 109.46957 * 304.99618 * 13 11 10 39 39 H 1.09003 * 109.47683 * 64.99495 * 13 11 10 40 40 H 1.08997 * 109.47218 * 299.99791 * 14 13 11 41 41 H 1.09006 * 109.46917 * 59.99949 * 14 13 11 42 42 H 0.97001 * 120.00014 * 359.97438 * 15 14 13 43 43 H 0.97005 * 120.00290 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58477 * 246.15549 * 24 7 5 45 45 H 1.08994 * 109.58663 * 6.43357 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.5064 -2.3855 -0.4453 6 8 0.4100 -2.3299 -0.9685 7 7 2.1118 -3.5774 -0.2738 8 6 3.4866 -3.6519 0.2391 9 6 4.3306 -4.4838 -0.7317 10 6 3.6641 -5.8451 -0.9434 11 6 2.2770 -5.6453 -1.5584 12 1 2.3718 -5.1137 -2.5052 13 6 1.6246 -7.0080 -1.8002 14 6 0.2928 -6.8139 -2.5279 15 7 -0.3316 -8.1187 -2.7600 16 6 -1.5393 -8.1956 -3.4008 17 1 -2.0313 -7.2943 -3.7355 18 6 -2.1311 -9.4318 -3.6202 19 7 -1.5313 -10.5302 -3.2127 20 14 -3.7790 -9.5366 -4.4937 21 1 -3.5566 -9.6613 -5.9568 22 1 -4.5246 -10.7236 -4.0034 23 1 -4.5657 -8.3082 -4.2157 24 6 1.4095 -4.8269 -0.5968 25 1 -0.3633 -1.0269 0.0401 26 1 -0.3633 0.5481 0.8693 27 1 -0.3634 0.4787 -0.9094 28 1 2.4421 1.6199 -1.0276 29 1 1.6714 2.0648 0.5139 30 1 3.2128 1.1749 0.5138 31 1 3.2007 -1.1811 0.3281 32 1 3.4852 -4.1259 1.2206 33 1 3.9041 -2.6482 0.3186 34 1 5.3278 -4.6277 -0.3156 35 1 4.4065 -3.9634 -1.6865 36 1 4.2755 -6.4482 -1.6145 37 1 3.5665 -6.3545 0.0152 38 1 2.2854 -7.6241 -2.4099 39 1 1.4477 -7.5010 -0.8442 40 1 -0.3680 -6.1978 -1.9182 41 1 0.4697 -6.3209 -3.4839 42 1 0.1109 -8.9283 -2.4603 43 1 -1.9447 -11.3942 -3.3664 44 1 1.2388 -5.3967 0.3166 45 1 0.4540 -4.5977 -1.0684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753538295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:54 Heat of formation + Delta-G solvation = -17.975866 kcal Electronic energy + Delta-G solvation = -22067.576119 eV Core-core repulsion = 18892.273991 eV Total energy + Delta-G solvation = -3175.302129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35970 -38.08980 -35.54336 -35.27929 -33.46538 -32.11662 -30.66280 -28.66002 -27.95542 -27.21310 -25.23701 -24.13626 -22.54043 -21.17341 -20.59207 -19.65822 -18.06291 -17.48178 -16.92555 -15.86022 -15.45740 -14.81419 -14.71294 -14.39978 -14.23665 -14.01072 -13.79369 -13.56301 -13.38886 -13.11102 -13.02532 -12.74438 -12.64697 -12.46339 -12.20477 -11.83906 -11.62962 -11.31863 -11.09393 -11.04745 -10.93326 -10.79690 -10.50851 -10.38653 -10.19057 -9.86610 -9.62058 -9.54311 -9.10392 -8.78759 -8.54078 -6.83637 -5.69455 -2.97382 1.12462 3.00137 3.21761 3.49269 3.54041 3.56464 4.40795 4.52188 4.61153 4.68411 4.79153 4.83845 4.90236 5.02372 5.14083 5.18988 5.21938 5.35395 5.44029 5.49266 5.53188 5.60421 5.62000 5.65163 5.68273 5.74934 5.83066 5.92219 5.95402 6.04362 6.09766 6.26830 6.29207 6.36486 6.39291 6.46429 6.50615 6.62309 6.96188 6.99339 7.44096 7.78444 8.23076 8.50148 9.60932 10.19935 10.54766 11.53803 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.003446 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.607004 B = 8122.287695 C = 9376.137803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.127 4.127 4 C -0.243 4.243 5 C 0.547 3.453 6 O -0.536 6.536 7 N -0.609 5.609 8 C 0.106 3.894 9 C -0.135 4.135 10 C -0.115 4.115 11 C -0.096 4.096 12 H 0.073 0.927 13 C -0.118 4.118 14 C 0.151 3.849 15 N -0.734 5.734 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.017 4.017 19 N -0.936 5.936 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.114 3.886 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.067 0.933 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.939 20.762 10.279 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 C -0.183 4.183 4 C -0.264 4.264 5 C 0.339 3.661 6 O -0.416 6.416 7 N -0.341 5.341 8 C -0.017 4.017 9 C -0.173 4.173 10 C -0.153 4.153 11 C -0.115 4.115 12 H 0.092 0.908 13 C -0.157 4.157 14 C 0.023 3.977 15 N -0.378 5.378 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.585 5.585 20 Si 0.738 3.262 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.008 4.008 25 H 0.122 0.878 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.199 20.827 9.934 27.094 hybrid contribution -0.520 -0.471 -0.366 0.792 sum 13.678 20.356 9.568 26.325 Atomic orbital electron populations 1.21457 0.91130 1.06476 1.01540 1.22543 0.96837 0.94338 0.89235 1.21013 0.99872 0.94468 1.02957 1.22459 1.01441 0.92694 1.09778 1.18550 0.85059 0.83525 0.78973 1.90715 1.20765 1.86284 1.43868 1.48065 1.14996 1.06252 1.64837 1.21787 0.81650 1.01100 0.97129 1.21935 0.98590 0.96811 1.00005 1.21591 0.96034 0.96307 1.01358 1.21455 0.94465 0.96790 0.98828 0.90850 1.21730 0.97736 0.95069 1.01132 1.20711 0.91237 0.89523 0.96186 1.42380 1.22674 1.02483 1.70293 1.19271 0.96005 0.92611 1.28813 0.91189 1.24733 0.99082 0.95402 1.01994 1.69661 1.39490 0.97025 1.52367 0.86184 0.83766 0.76974 0.79298 1.21766 1.21795 1.20715 1.21812 0.96867 0.83277 0.98819 0.87839 0.91647 0.91085 0.90007 0.91303 0.91310 0.85417 0.91415 0.89784 0.90848 0.91519 0.91475 0.91699 0.91606 0.91814 0.96151 0.96543 0.78382 0.93606 0.91455 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.36 36.01 0.34 -1.24 16 2 C -0.03 -0.26 6.03 -101.16 -0.61 -0.87 16 3 C -0.13 -0.77 10.05 36.01 0.36 -0.41 16 4 C -0.24 -2.46 8.90 -37.81 -0.34 -2.80 16 5 C 0.55 7.49 7.35 -12.67 -0.09 7.39 16 6 O -0.54 -9.30 12.98 5.26 0.07 -9.23 16 7 N -0.61 -7.49 2.97 -174.16 -0.52 -8.01 16 8 C 0.11 0.91 6.31 -3.71 -0.02 0.89 16 9 C -0.14 -1.15 6.08 -26.61 -0.16 -1.31 16 10 C -0.12 -1.21 5.17 -26.69 -0.14 -1.35 16 11 C -0.10 -1.30 2.34 -90.50 -0.21 -1.51 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -1.96 4.80 -26.73 -0.13 -2.09 16 14 C 0.15 3.24 6.02 -4.04 -0.02 3.21 16 15 N -0.73 -19.67 5.60 -59.91 -0.34 -20.00 16 16 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 17 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.02 -0.50 5.50 -17.44 -0.10 -0.59 16 19 N -0.94 -29.26 13.06 55.49 0.72 -28.53 16 20 Si 0.91 23.28 29.55 -169.99 -5.02 18.25 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.11 1.61 5.33 -3.71 -0.02 1.59 16 25 H 0.10 1.41 5.00 -51.93 -0.26 1.15 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 0.33 8.06 -51.93 -0.42 -0.09 16 31 H 0.13 0.94 5.90 -52.49 -0.31 0.63 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.55 5.39 -51.93 -0.28 0.27 16 34 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.45 6.70 -51.93 -0.35 0.10 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.38 10.62 7.67 -40.82 -0.31 10.30 16 43 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.10 1.70 5.72 -51.93 -0.30 1.40 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -34.01 353.26 -8.74 -42.76 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.69 Total: 5.64 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.29 Total: -6.20 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.13 Total: -56.55 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.01 -8.74 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753538295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.781 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds