Wall clock time and date at job start Tue Mar 31 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50707 * 119.99576 * 2 1 4 4 C 1.32990 * 120.00220 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99862 * 20.50893 * 4 2 1 6 6 O 1.21616 * 119.99827 * 9.12813 * 5 4 2 7 7 N 1.34773 * 119.99780 * 189.13162 * 5 4 2 8 8 C 1.46925 * 120.63198 * 354.19039 * 7 5 4 9 9 C 1.53198 * 108.77471 * 233.63092 * 8 7 5 10 10 C 1.53041 * 109.31239 * 305.36508 * 9 8 7 11 11 C 1.53036 * 109.52700 * 61.37432 * 10 9 8 12 12 H 1.08998 * 109.50360 * 58.57926 * 11 10 9 13 13 C 1.53001 * 109.49649 * 178.67919 * 11 10 9 14 14 C 1.53001 * 109.47014 * 184.99667 * 13 11 10 15 15 N 1.46504 * 109.46959 * 179.97438 * 14 13 11 16 16 C 1.36935 * 119.99900 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99942 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31610 * 120.00212 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99807 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46710 * 89.99954 * 20 18 16 22 22 H 1.48499 * 109.47100 * 209.99855 * 20 18 16 23 23 H 1.48494 * 109.47350 * 330.00302 * 20 18 16 24 24 C 1.46932 * 120.62950 * 174.21484 * 7 5 4 25 25 H 1.09004 * 109.46847 * 182.23357 * 1 2 3 26 26 H 1.08997 * 109.47047 * 302.23077 * 1 2 3 27 27 H 1.09004 * 109.47173 * 62.23687 * 1 2 3 28 28 H 1.08999 * 109.47284 * 270.00065 * 3 2 1 29 29 H 1.08997 * 109.46984 * 30.00429 * 3 2 1 30 30 H 1.08997 * 109.46699 * 150.00055 * 3 2 1 31 31 H 1.08002 * 120.00052 * 200.49961 * 4 2 1 32 32 H 1.09001 * 109.58999 * 113.84783 * 8 7 5 33 33 H 1.08995 * 109.70526 * 353.48723 * 8 7 5 34 34 H 1.09007 * 109.49836 * 185.41206 * 9 8 7 35 35 H 1.09000 * 109.52295 * 65.33362 * 9 8 7 36 36 H 1.08997 * 109.45607 * 181.38957 * 10 9 8 37 37 H 1.08997 * 109.45700 * 301.35482 * 10 9 8 38 38 H 1.08997 * 109.46957 * 304.99618 * 13 11 10 39 39 H 1.09003 * 109.47683 * 64.99495 * 13 11 10 40 40 H 1.08997 * 109.47218 * 299.99791 * 14 13 11 41 41 H 1.09006 * 109.46917 * 59.99949 * 14 13 11 42 42 H 0.97001 * 120.00014 * 359.97438 * 15 14 13 43 43 H 0.97005 * 120.00290 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58477 * 246.15549 * 24 7 5 45 45 H 1.08994 * 109.58663 * 6.43357 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.5064 -2.3855 -0.4453 6 8 0.4100 -2.3299 -0.9685 7 7 2.1118 -3.5774 -0.2738 8 6 3.4866 -3.6519 0.2391 9 6 4.3306 -4.4838 -0.7317 10 6 3.6641 -5.8451 -0.9434 11 6 2.2770 -5.6453 -1.5584 12 1 2.3718 -5.1137 -2.5052 13 6 1.6246 -7.0080 -1.8002 14 6 0.2928 -6.8139 -2.5279 15 7 -0.3316 -8.1187 -2.7600 16 6 -1.5393 -8.1956 -3.4008 17 1 -2.0313 -7.2943 -3.7355 18 6 -2.1311 -9.4318 -3.6202 19 7 -1.5313 -10.5302 -3.2127 20 14 -3.7790 -9.5366 -4.4937 21 1 -3.5566 -9.6613 -5.9568 22 1 -4.5246 -10.7236 -4.0034 23 1 -4.5657 -8.3082 -4.2157 24 6 1.4095 -4.8269 -0.5968 25 1 -0.3633 -1.0269 0.0401 26 1 -0.3633 0.5481 0.8693 27 1 -0.3634 0.4787 -0.9094 28 1 2.4421 1.6199 -1.0276 29 1 1.6714 2.0648 0.5139 30 1 3.2128 1.1749 0.5138 31 1 3.2007 -1.1811 0.3281 32 1 3.4852 -4.1259 1.2206 33 1 3.9041 -2.6482 0.3186 34 1 5.3278 -4.6277 -0.3156 35 1 4.4065 -3.9634 -1.6865 36 1 4.2755 -6.4482 -1.6145 37 1 3.5665 -6.3545 0.0152 38 1 2.2854 -7.6241 -2.4099 39 1 1.4477 -7.5010 -0.8442 40 1 -0.3680 -6.1978 -1.9182 41 1 0.4697 -6.3209 -3.4839 42 1 0.1109 -8.9283 -2.4603 43 1 -1.9447 -11.3942 -3.3664 44 1 1.2388 -5.3967 0.3166 45 1 0.4540 -4.5977 -1.0684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753538295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:53 Heat of formation + Delta-G solvation = -39.355758 kcal Electronic energy + Delta-G solvation = -22068.503221 eV Core-core repulsion = 18892.273991 eV Total energy + Delta-G solvation = -3176.229230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34475 -39.13925 -37.00761 -36.28445 -35.01786 -33.39166 -32.32553 -29.73798 -28.65102 -28.52258 -26.15759 -25.88903 -24.02455 -22.29825 -21.89995 -20.63245 -19.21862 -18.84545 -18.35630 -16.88823 -16.76462 -16.38399 -15.84638 -15.53753 -15.35225 -15.15782 -15.07031 -14.74969 -14.66494 -14.31270 -14.20889 -13.84516 -13.43322 -13.36776 -13.17934 -12.99787 -12.87039 -12.62848 -12.54329 -12.42408 -12.23617 -12.14923 -11.95780 -11.85512 -11.74072 -11.48546 -11.18389 -10.95425 -10.56940 -9.93186 -9.47229 -9.05362 -7.99879 -5.29477 0.32987 1.43515 1.46006 1.55019 2.07608 2.27597 2.52508 3.32904 3.56790 3.70163 3.85575 3.86010 3.95719 4.06626 4.11884 4.25619 4.32695 4.41184 4.49104 4.54422 4.58805 4.67587 4.68611 4.71382 4.77522 4.85691 4.88490 4.89459 4.92306 5.02335 5.06395 5.15246 5.21428 5.22944 5.30485 5.36489 5.43820 5.50429 5.51887 5.63049 5.69963 6.23170 6.51920 7.24412 7.28848 8.03494 8.29191 9.23694 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.003446 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.607004 B = 8122.287695 C = 9376.137803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.023 4.023 3 C -0.122 4.122 4 C -0.253 4.253 5 C 0.533 3.467 6 O -0.589 6.589 7 N -0.609 5.609 8 C 0.100 3.900 9 C -0.129 4.129 10 C -0.112 4.112 11 C -0.084 4.084 12 H 0.059 0.941 13 C -0.104 4.104 14 C 0.151 3.849 15 N -0.746 5.746 16 C -0.253 4.253 17 H 0.068 0.932 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.976 3.024 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.273 1.273 24 C 0.117 3.883 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.163 0.837 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.012 0.988 41 H 0.008 0.992 42 H 0.376 0.624 43 H 0.254 0.746 44 H 0.072 0.928 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.041 22.422 11.290 30.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 C -0.178 4.178 4 C -0.273 4.273 5 C 0.327 3.673 6 O -0.473 6.473 7 N -0.340 5.340 8 C -0.021 4.021 9 C -0.167 4.167 10 C -0.149 4.149 11 C -0.104 4.104 12 H 0.077 0.923 13 C -0.143 4.143 14 C 0.025 3.975 15 N -0.389 5.389 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.804 3.196 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.198 1.198 24 C -0.006 4.006 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.180 0.820 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.208 0.792 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.349 22.515 10.961 29.906 hybrid contribution -1.206 -0.940 -0.667 1.668 sum 15.143 21.576 10.293 28.298 Atomic orbital electron populations 1.21422 0.92762 1.04485 1.02328 1.22870 0.96141 0.95944 0.87563 1.21062 1.00490 0.92478 1.03799 1.22540 1.02811 0.90906 1.11038 1.19308 0.84642 0.84908 0.78456 1.90701 1.23120 1.87103 1.46332 1.48186 1.16422 1.05085 1.64320 1.22128 0.79315 1.03053 0.97607 1.21923 0.99811 0.95006 0.99934 1.21577 0.93676 0.98155 1.01535 1.21328 0.96304 0.94396 0.98403 0.92273 1.21597 0.95107 0.97136 1.00412 1.20828 0.93423 0.87143 0.96118 1.42576 1.22309 1.03923 1.70089 1.19619 0.97127 0.92796 1.28944 0.91374 1.25596 1.02879 0.94997 1.03088 1.69807 1.41089 0.97379 1.53565 0.85112 0.79277 0.77114 0.78100 1.21042 1.21503 1.19786 1.21573 0.95722 0.84564 0.98755 0.91300 0.89617 0.91402 0.89330 0.90133 0.89192 0.81969 0.89873 0.87073 0.87575 0.92201 0.90933 0.90776 0.91414 0.91533 0.96967 0.97448 0.79235 0.93742 0.90992 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.36 71.24 0.67 -2.60 16 2 C -0.02 -0.40 6.03 -17.61 -0.11 -0.51 16 3 C -0.12 -1.09 10.05 71.24 0.72 -0.37 16 4 C -0.25 -4.67 8.90 23.43 0.21 -4.46 16 5 C 0.53 14.76 7.35 86.57 0.64 15.40 16 6 O -0.59 -21.86 12.98 -4.08 -0.05 -21.91 16 7 N -0.61 -14.67 2.97 -823.16 -2.45 -17.12 16 8 C 0.10 1.41 6.31 86.36 0.54 1.96 16 9 C -0.13 -1.76 6.08 30.67 0.19 -1.57 16 10 C -0.11 -2.12 5.17 30.62 0.16 -1.96 16 11 C -0.08 -2.29 2.34 -10.72 -0.03 -2.32 16 12 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 13 C -0.10 -3.52 4.80 30.59 0.15 -3.37 16 14 C 0.15 6.79 6.02 86.38 0.52 7.31 16 15 N -0.75 -41.25 5.60 -343.44 -1.92 -43.18 16 16 C -0.25 -15.30 9.99 84.03 0.84 -14.46 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 18 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 19 N -0.97 -61.37 13.06 21.65 0.28 -61.08 16 20 Si 0.98 48.38 29.55 68.60 2.03 50.40 16 21 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 24 C 0.12 3.41 5.33 86.36 0.46 3.87 16 25 H 0.07 2.01 5.00 -2.40 -0.01 2.00 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 30 H 0.09 0.47 8.06 -2.39 -0.02 0.45 16 31 H 0.16 1.74 5.90 -2.91 -0.02 1.72 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.98 5.39 -2.39 -0.01 0.97 16 34 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.01 0.58 6.70 -2.39 -0.02 0.56 16 41 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.38 21.47 7.67 -92.71 -0.71 20.76 16 43 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 44 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.23 5.72 -2.39 -0.01 2.21 16 Total: -1.00 -77.00 353.26 3.56 -73.44 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.25 Total: 26.50 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 5.42 Total: -7.06 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -4.09 Total: -121.38 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.40 kcal Total: -77.00 3.56 -73.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753538295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.083 kcal (2) G-P(sol) polarization free energy of solvation -76.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds