Wall clock time and date at job start Tue Mar 31 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50697 * 120.00067 * 2 1 4 4 C 1.32997 * 119.99780 * 180.02562 * 2 1 3 5 5 C 1.47100 * 120.00235 * 0.02562 * 4 2 1 6 6 O 1.21608 * 119.99954 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99749 * 180.02562 * 5 4 2 8 8 C 1.46510 * 119.99824 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47161 * 179.97438 * 8 7 5 10 10 C 1.52989 * 109.47021 * 179.97438 * 9 8 7 11 11 C 1.53349 * 109.42090 * 295.12340 * 10 9 8 12 12 C 1.53189 * 109.15350 * 178.67324 * 11 10 9 13 13 N 1.46931 * 108.89061 * 54.57922 * 12 11 10 14 14 C 1.36938 * 120.62972 * 126.29441 * 13 12 11 15 15 H 1.08005 * 120.00173 * 331.83979 * 14 13 12 16 16 C 1.38813 * 119.99936 * 151.83343 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08512 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08402 * 16 14 13 19 19 H 1.48500 * 109.46925 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46793 * 120.00276 * 18 16 14 21 21 H 1.48498 * 109.46814 * 240.00176 * 18 16 14 22 22 C 1.46927 * 118.74004 * 306.32424 * 13 12 11 23 23 C 1.53047 * 109.46104 * 174.99893 * 10 9 8 24 24 H 1.09000 * 109.46769 * 239.99579 * 1 2 3 25 25 H 1.08993 * 109.46990 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46706 * 119.99742 * 1 2 3 27 27 H 1.09000 * 109.47317 * 270.00176 * 3 2 1 28 28 H 1.09007 * 109.46954 * 30.00036 * 3 2 1 29 29 H 1.09004 * 109.47202 * 149.99425 * 3 2 1 30 30 H 1.08001 * 119.99610 * 180.02562 * 4 2 1 31 31 H 0.96999 * 120.00554 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.46843 * 60.00100 * 8 7 5 33 33 H 1.08999 * 109.46605 * 299.99681 * 8 7 5 34 34 H 1.09000 * 109.46864 * 59.99434 * 9 8 7 35 35 H 1.09008 * 109.46801 * 300.00148 * 9 8 7 36 36 H 1.08997 * 109.46256 * 55.02800 * 10 9 8 37 37 H 1.09001 * 109.68292 * 58.70967 * 11 10 9 38 38 H 1.08994 * 109.47524 * 298.51791 * 11 10 9 39 39 H 1.09000 * 109.58714 * 294.72587 * 12 11 10 40 40 H 1.09003 * 109.58688 * 174.43867 * 12 11 10 41 41 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.58255 * 173.39566 * 22 13 12 43 43 H 1.09000 * 109.58150 * 293.67300 * 22 13 12 44 44 H 1.09000 * 109.49464 * 61.43304 * 23 10 9 45 45 H 1.08999 * 109.52117 * 301.35057 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0017 6 8 0.2204 -2.4257 -0.0017 7 7 2.1104 -3.5929 -0.0017 8 6 1.3779 -4.8617 -0.0034 9 6 2.3721 -6.0246 -0.0036 10 6 1.6072 -7.3495 -0.0048 11 6 0.8199 -7.4849 1.3042 12 6 0.0305 -8.7975 1.2825 13 7 0.9576 -9.9059 1.0168 14 6 1.0122 -10.9864 1.8563 15 1 0.7589 -10.8727 2.9000 16 6 1.3930 -12.2279 1.3658 17 7 1.3793 -12.4558 0.0695 18 14 1.9249 -13.5752 2.5454 19 1 1.8519 -13.0694 3.9397 20 1 1.0249 -14.7470 2.3966 21 1 3.3200 -13.9802 2.2376 22 6 1.8256 -9.8327 -0.1665 23 6 2.5972 -8.5098 -0.1308 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5138 -0.8901 27 1 2.4422 1.6198 -1.0277 28 1 1.6714 2.0647 0.5139 29 1 3.2130 1.1748 0.5139 30 1 3.2520 -1.1518 -0.0001 31 1 3.0804 -3.5929 -0.0013 32 1 0.7523 -4.9188 -0.8941 33 1 0.7503 -4.9200 0.8859 34 1 2.9981 -5.9676 0.8869 35 1 2.9995 -5.9660 -0.8931 36 1 0.9158 -7.3690 -0.8472 37 1 0.1300 -6.6471 1.4060 38 1 1.5124 -7.4907 2.1459 39 1 -0.7248 -8.7568 0.4976 40 1 -0.4532 -8.9490 2.2475 41 1 1.6457 -13.3232 -0.2732 42 1 2.5282 -10.6660 -0.1563 43 1 1.2169 -9.8789 -1.0695 44 1 3.2731 -8.5058 0.7243 45 1 3.1726 -8.3994 -1.0500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753593215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:02 Heat of formation + Delta-G solvation = -25.373943 kcal Electronic energy + Delta-G solvation = -21693.583191 eV Core-core repulsion = 18517.960258 eV Total energy + Delta-G solvation = -3175.622933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.89751 -38.00421 -36.05233 -35.03305 -33.50369 -31.29231 -30.01027 -29.07615 -28.09569 -27.56072 -25.01569 -23.14934 -22.05726 -21.10438 -20.72411 -19.06688 -18.80437 -17.04405 -16.72531 -15.73787 -15.55726 -14.81968 -14.55988 -14.43695 -14.16569 -13.84032 -13.66803 -13.45765 -13.27497 -12.78869 -12.73214 -12.64471 -12.39863 -12.18157 -11.98074 -11.83021 -11.51455 -11.29601 -11.17526 -10.85157 -10.68128 -10.41198 -10.16555 -10.09749 -9.85144 -9.68724 -9.49188 -9.40804 -9.31058 -8.92151 -8.43194 -6.61194 -5.74885 -3.16940 1.17096 3.20656 3.21483 3.38776 3.46547 3.49036 4.47976 4.52895 4.54836 4.91919 5.00058 5.10168 5.11841 5.16540 5.33636 5.40402 5.43008 5.47934 5.50546 5.65524 5.66734 5.78499 5.83737 5.88728 6.06560 6.08979 6.18407 6.22942 6.26516 6.30575 6.42191 6.47020 6.60848 6.68990 6.75912 6.87960 6.91552 7.07094 7.43128 7.49619 7.71082 7.83599 8.21304 8.49895 9.26160 9.90032 10.47331 11.33571 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050909 B = 0.002575 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.866340 B =10871.415036 C =10999.611490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 C -0.127 4.127 4 C -0.237 4.237 5 C 0.540 3.460 6 O -0.544 6.544 7 N -0.728 5.728 8 C 0.118 3.882 9 C -0.125 4.125 10 C -0.075 4.075 11 C -0.130 4.130 12 C 0.144 3.856 13 N -0.593 5.593 14 C -0.249 4.249 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.170 3.830 23 C -0.134 4.134 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.399 0.601 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.051 0.949 41 H 0.252 0.748 42 H 0.086 0.914 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 23.915 -1.589 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.183 4.183 4 C -0.258 4.258 5 C 0.330 3.670 6 O -0.423 6.423 7 N -0.378 5.378 8 C -0.005 4.005 9 C -0.163 4.163 10 C -0.094 4.094 11 C -0.169 4.169 12 C 0.018 3.982 13 N -0.316 5.316 14 C -0.378 4.378 15 H 0.083 0.917 16 C -0.199 4.199 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.044 3.956 23 C -0.173 4.173 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.232 0.768 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.072 0.928 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.600 23.717 -1.655 24.045 hybrid contribution 0.938 -0.839 0.486 1.349 sum 4.538 22.878 -1.169 23.353 Atomic orbital electron populations 1.21054 0.90744 1.00985 1.04522 1.22587 0.96996 0.94451 0.89671 1.21023 1.00070 0.94368 1.02874 1.22392 0.99970 0.92095 1.11310 1.18565 0.87463 0.84362 0.76618 1.90782 1.13737 1.87754 1.50067 1.46002 1.10275 1.06060 1.75496 1.21511 0.95036 0.81479 1.02503 1.21902 0.97985 0.94333 1.02061 1.21023 0.97248 0.92640 0.98478 1.22169 0.99091 0.98765 0.96844 1.20899 0.91502 0.87436 0.98375 1.44066 1.40593 1.18567 1.28386 1.19236 1.41898 0.86458 0.90257 0.91750 1.25050 1.02155 0.96933 0.95728 1.70046 1.51117 1.22444 1.11241 0.86239 0.78110 0.81976 0.80576 1.20289 1.21772 1.21606 1.20763 0.92961 0.93484 0.88358 1.22211 0.97806 0.97392 0.99881 0.89829 0.93044 0.89909 0.90340 0.90961 0.91151 0.85809 0.76777 0.91662 0.91079 0.91636 0.91842 0.91725 0.93040 0.92473 0.96593 0.93023 0.93762 0.89625 0.96542 0.92783 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.33 36.01 0.30 -0.81 16 2 C -0.04 -0.30 6.11 -101.17 -0.62 -0.92 16 3 C -0.13 -0.68 9.98 36.00 0.36 -0.32 16 4 C -0.24 -2.17 9.63 -37.81 -0.36 -2.54 16 5 C 0.54 6.65 7.73 -12.67 -0.10 6.56 16 6 O -0.54 -8.48 13.07 5.27 0.07 -8.41 16 7 N -0.73 -7.94 5.55 -61.49 -0.34 -8.28 16 8 C 0.12 1.49 5.43 -4.04 -0.02 1.47 16 9 C -0.12 -1.57 4.80 -26.74 -0.13 -1.70 16 10 C -0.07 -1.21 2.15 -90.42 -0.19 -1.41 16 11 C -0.13 -2.26 5.16 -26.45 -0.14 -2.40 16 12 C 0.14 3.10 6.50 -3.71 -0.02 3.08 16 13 N -0.59 -15.13 2.99 -172.32 -0.52 -15.65 16 14 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 15 H 0.06 1.77 7.89 -52.48 -0.41 1.36 16 16 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 17 N -0.90 -26.58 11.20 55.49 0.62 -25.96 16 18 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 23 C -0.13 -2.50 5.36 -26.61 -0.14 -2.65 16 24 H 0.08 0.94 7.22 -51.93 -0.38 0.56 16 25 H 0.05 0.37 7.94 -51.93 -0.41 -0.04 16 26 H 0.08 0.92 7.22 -51.93 -0.37 0.55 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.33 8.05 -51.93 -0.42 -0.09 16 29 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 30 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.40 3.24 8.46 -40.82 -0.35 2.90 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.00 6.53 -51.93 -0.34 0.66 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.80 6.52 -51.93 -0.34 0.46 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -31.85 354.39 -9.12 -40.97 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.95 Total: -0.17 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -1.32 Total: -4.75 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.24 Total: -49.89 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.85 -9.12 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753593215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.601 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds