Wall clock time and date at job start Tue Mar 31 2020 02:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50697 * 120.00067 * 2 1 4 4 C 1.32997 * 119.99780 * 180.02562 * 2 1 3 5 5 C 1.47100 * 120.00235 * 0.02562 * 4 2 1 6 6 O 1.21608 * 119.99954 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99749 * 180.02562 * 5 4 2 8 8 C 1.46510 * 119.99824 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47161 * 179.97438 * 8 7 5 10 10 C 1.52989 * 109.47021 * 179.97438 * 9 8 7 11 11 C 1.53349 * 109.42090 * 295.12340 * 10 9 8 12 12 C 1.53189 * 109.15350 * 178.67324 * 11 10 9 13 13 N 1.46931 * 108.89061 * 54.57922 * 12 11 10 14 14 C 1.36938 * 120.62972 * 126.29441 * 13 12 11 15 15 H 1.08005 * 120.00173 * 331.83979 * 14 13 12 16 16 C 1.38813 * 119.99936 * 151.83343 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08512 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08402 * 16 14 13 19 19 H 1.48500 * 109.46925 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46793 * 120.00276 * 18 16 14 21 21 H 1.48498 * 109.46814 * 240.00176 * 18 16 14 22 22 C 1.46927 * 118.74004 * 306.32424 * 13 12 11 23 23 C 1.53047 * 109.46104 * 174.99893 * 10 9 8 24 24 H 1.09000 * 109.46769 * 239.99579 * 1 2 3 25 25 H 1.08993 * 109.46990 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46706 * 119.99742 * 1 2 3 27 27 H 1.09000 * 109.47317 * 270.00176 * 3 2 1 28 28 H 1.09007 * 109.46954 * 30.00036 * 3 2 1 29 29 H 1.09004 * 109.47202 * 149.99425 * 3 2 1 30 30 H 1.08001 * 119.99610 * 180.02562 * 4 2 1 31 31 H 0.96999 * 120.00554 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.46843 * 60.00100 * 8 7 5 33 33 H 1.08999 * 109.46605 * 299.99681 * 8 7 5 34 34 H 1.09000 * 109.46864 * 59.99434 * 9 8 7 35 35 H 1.09008 * 109.46801 * 300.00148 * 9 8 7 36 36 H 1.08997 * 109.46256 * 55.02800 * 10 9 8 37 37 H 1.09001 * 109.68292 * 58.70967 * 11 10 9 38 38 H 1.08994 * 109.47524 * 298.51791 * 11 10 9 39 39 H 1.09000 * 109.58714 * 294.72587 * 12 11 10 40 40 H 1.09003 * 109.58688 * 174.43867 * 12 11 10 41 41 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.58255 * 173.39566 * 22 13 12 43 43 H 1.09000 * 109.58150 * 293.67300 * 22 13 12 44 44 H 1.09000 * 109.49464 * 61.43304 * 23 10 9 45 45 H 1.08999 * 109.52117 * 301.35057 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0017 6 8 0.2204 -2.4257 -0.0017 7 7 2.1104 -3.5929 -0.0017 8 6 1.3779 -4.8617 -0.0034 9 6 2.3721 -6.0246 -0.0036 10 6 1.6072 -7.3495 -0.0048 11 6 0.8199 -7.4849 1.3042 12 6 0.0305 -8.7975 1.2825 13 7 0.9576 -9.9059 1.0168 14 6 1.0122 -10.9864 1.8563 15 1 0.7589 -10.8727 2.9000 16 6 1.3930 -12.2279 1.3658 17 7 1.3793 -12.4558 0.0695 18 14 1.9249 -13.5752 2.5454 19 1 1.8519 -13.0694 3.9397 20 1 1.0249 -14.7470 2.3966 21 1 3.3200 -13.9802 2.2376 22 6 1.8256 -9.8327 -0.1665 23 6 2.5972 -8.5098 -0.1308 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5138 -0.8901 27 1 2.4422 1.6198 -1.0277 28 1 1.6714 2.0647 0.5139 29 1 3.2130 1.1748 0.5139 30 1 3.2520 -1.1518 -0.0001 31 1 3.0804 -3.5929 -0.0013 32 1 0.7523 -4.9188 -0.8941 33 1 0.7503 -4.9200 0.8859 34 1 2.9981 -5.9676 0.8869 35 1 2.9995 -5.9660 -0.8931 36 1 0.9158 -7.3690 -0.8472 37 1 0.1300 -6.6471 1.4060 38 1 1.5124 -7.4907 2.1459 39 1 -0.7248 -8.7568 0.4976 40 1 -0.4532 -8.9490 2.2475 41 1 1.6457 -13.3232 -0.2732 42 1 2.5282 -10.6660 -0.1563 43 1 1.2169 -9.8789 -1.0695 44 1 3.2731 -8.5058 0.7243 45 1 3.1726 -8.3994 -1.0500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753593215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:01 Heat of formation + Delta-G solvation = -44.780791 kcal Electronic energy + Delta-G solvation = -21694.424735 eV Core-core repulsion = 18517.960258 eV Total energy + Delta-G solvation = -3176.464477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83174 -39.52707 -37.03641 -36.08601 -35.02080 -33.06614 -31.63215 -30.41033 -28.73132 -28.53563 -26.68940 -24.64544 -23.65173 -22.17908 -22.05553 -20.65839 -19.60020 -18.70319 -17.86976 -16.86435 -16.66781 -16.54940 -15.71594 -15.47239 -15.30463 -15.21981 -14.91134 -14.83190 -14.54492 -14.28691 -13.90155 -13.82734 -13.30690 -13.21962 -13.02225 -12.94217 -12.81431 -12.64469 -12.57715 -12.38923 -12.23825 -12.13054 -11.91713 -11.81566 -11.51624 -11.07991 -10.98963 -10.59069 -10.52922 -10.27226 -9.77357 -8.67306 -7.87555 -5.33379 0.45152 1.45121 1.46378 1.57627 2.33851 2.35483 2.50721 3.26371 3.71426 3.82725 3.86560 3.92902 3.95873 4.13440 4.29922 4.34249 4.44146 4.58418 4.59879 4.66442 4.71507 4.74673 4.77365 4.83625 4.89320 4.92950 5.02768 5.05325 5.08695 5.11499 5.20171 5.26834 5.35696 5.39806 5.46369 5.51388 5.56097 5.58714 5.65822 5.67351 5.80699 6.39499 6.67997 7.15170 7.34702 7.87050 8.38897 9.18670 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050909 B = 0.002575 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.866340 B =10871.415036 C =10999.611490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.032 4.032 3 C -0.123 4.123 4 C -0.246 4.246 5 C 0.530 3.470 6 O -0.586 6.586 7 N -0.717 5.717 8 C 0.125 3.875 9 C -0.107 4.107 10 C -0.070 4.070 11 C -0.117 4.117 12 C 0.138 3.862 13 N -0.612 5.612 14 C -0.261 4.261 15 H 0.064 0.936 16 C -0.054 4.054 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.293 1.293 21 H -0.287 1.287 22 C 0.174 3.826 23 C -0.120 4.120 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.415 0.585 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.008 0.992 40 H 0.048 0.952 41 H 0.250 0.750 42 H 0.051 0.949 43 H -0.008 1.008 44 H 0.053 0.947 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 26.295 -1.002 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.034 4.034 3 C -0.179 4.179 4 C -0.267 4.267 5 C 0.322 3.678 6 O -0.469 6.469 7 N -0.369 5.369 8 C 0.001 3.999 9 C -0.145 4.145 10 C -0.090 4.090 11 C -0.156 4.156 12 C 0.012 3.988 13 N -0.336 5.336 14 C -0.392 4.392 15 H 0.082 0.918 16 C -0.249 4.249 17 N -0.583 5.583 18 Si 0.796 3.204 19 H -0.191 1.191 20 H -0.220 1.220 21 H -0.214 1.214 22 C 0.048 3.952 23 C -0.159 4.159 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.173 0.827 31 H 0.251 0.749 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.499 26.126 -1.059 26.719 hybrid contribution 0.255 -1.555 0.284 1.601 sum 5.754 24.571 -0.775 25.247 Atomic orbital electron populations 1.20990 0.92144 1.01715 1.02478 1.22895 0.96369 0.95956 0.88173 1.21078 1.00342 0.92536 1.03991 1.22506 1.01282 0.90534 1.12383 1.19194 0.87215 0.85627 0.75806 1.90770 1.15675 1.88384 1.52093 1.45861 1.11067 1.05117 1.74835 1.21285 0.94950 0.82435 1.01263 1.21688 0.97503 0.91639 1.03657 1.20937 0.96777 0.93815 0.97442 1.22019 0.99098 0.96836 0.97605 1.21070 0.91494 0.88411 0.97803 1.44358 1.41852 1.19022 1.28357 1.19551 1.41462 0.87465 0.90704 0.91826 1.25837 1.02635 0.99174 0.97265 1.70202 1.52293 1.22797 1.12980 0.85192 0.77332 0.78859 0.78982 1.19131 1.21964 1.21405 1.20623 0.92176 0.95395 0.87005 1.22008 0.97685 0.95135 1.01049 0.92020 0.90802 0.92043 0.89045 0.90017 0.89723 0.82722 0.74860 0.92945 0.92492 0.90413 0.89841 0.92396 0.90858 0.92494 0.97410 0.93331 0.94114 0.93019 0.99040 0.92826 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.33 71.24 0.59 -1.58 16 2 C -0.03 -0.48 6.11 -17.61 -0.11 -0.58 16 3 C -0.12 -0.90 9.98 71.23 0.71 -0.19 16 4 C -0.25 -3.95 9.63 23.43 0.23 -3.73 16 5 C 0.53 12.43 7.73 86.57 0.67 13.10 16 6 O -0.59 -18.44 13.07 -4.06 -0.05 -18.50 16 7 N -0.72 -14.08 5.55 -466.71 -2.59 -16.67 16 8 C 0.12 2.93 5.43 86.38 0.47 3.40 16 9 C -0.11 -2.38 4.80 30.59 0.15 -2.23 16 10 C -0.07 -2.18 2.15 -10.66 -0.02 -2.20 16 11 C -0.12 -3.94 5.16 30.77 0.16 -3.78 16 12 C 0.14 5.97 6.50 86.36 0.56 6.54 16 13 N -0.61 -31.83 2.99 -699.08 -2.09 -33.92 16 14 C -0.26 -14.84 9.58 84.03 0.81 -14.03 16 15 H 0.06 3.54 7.89 -2.91 -0.02 3.52 16 16 C -0.05 -3.09 4.92 84.86 0.42 -2.68 16 17 N -0.94 -56.68 11.20 21.65 0.24 -56.44 16 18 Si 0.97 45.69 29.59 68.60 2.03 47.72 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 C 0.17 8.54 5.30 86.36 0.46 9.00 16 23 C -0.12 -4.35 5.36 30.67 0.16 -4.18 16 24 H 0.06 1.42 7.22 -2.39 -0.02 1.40 16 25 H 0.07 0.98 7.94 -2.39 -0.02 0.96 16 26 H 0.06 1.40 7.22 -2.38 -0.02 1.39 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.47 8.05 -2.38 -0.02 0.45 16 29 H 0.08 0.42 8.07 -2.39 -0.02 0.40 16 30 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 31 H 0.41 5.38 8.46 -92.71 -0.78 4.59 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.51 6.53 -2.39 -0.02 1.50 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.18 6.52 -2.39 -0.02 2.16 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.05 2.08 7.93 -2.39 -0.02 2.07 16 41 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.05 2.87 6.06 -2.39 -0.01 2.86 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -71.66 354.39 2.95 -68.71 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.17 Total: 12.24 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.25 Total: -3.14 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.44 Total: -107.03 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.50 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.66 2.95 -68.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753593215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.930 kcal (2) G-P(sol) polarization free energy of solvation -71.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds