Wall clock time and date at job start Tue Mar 31 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47230 * 2 1 4 4 H 1.09000 * 110.05597 * 53.28399 * 3 2 1 5 5 C 1.54266 * 110.03409 * 291.87039 * 3 2 1 6 6 C 1.54893 * 104.19732 * 217.10386 * 5 3 2 7 7 C 1.54891 * 102.74429 * 37.94059 * 6 5 3 8 8 C 1.53878 * 110.03399 * 174.70120 * 3 2 1 9 9 H 1.09001 * 110.03186 * 238.61752 * 8 3 2 10 10 C 1.50702 * 110.02900 * 0.02562 * 8 3 2 11 11 O 1.21280 * 120.00056 * 86.42182 * 10 8 3 12 12 N 1.34777 * 119.99645 * 266.41650 * 10 8 3 13 13 C 1.46505 * 119.99622 * 179.72859 * 12 10 8 14 14 C 1.50707 * 109.46778 * 180.27719 * 13 12 10 15 15 C 1.30998 * 119.99474 * 124.99797 * 14 13 12 16 16 C 1.50699 * 119.99356 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46970 * 125.00393 * 16 15 14 18 18 C 1.36938 * 120.00243 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00084 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00061 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99766 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47312 * 59.99867 * 22 20 18 24 24 H 1.48504 * 109.47132 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47286 * 300.00055 * 22 20 18 26 26 H 1.08997 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46962 * 299.99963 * 1 2 3 28 28 H 1.09001 * 109.46843 * 60.00125 * 1 2 3 29 29 H 1.08997 * 109.46962 * 240.00037 * 2 1 3 30 30 H 1.08997 * 109.46980 * 120.00358 * 2 1 3 31 31 H 1.08997 * 110.48504 * 335.78259 * 5 3 2 32 32 H 1.09002 * 110.48398 * 98.42554 * 5 3 2 33 33 H 1.09001 * 110.75690 * 156.25526 * 6 5 3 34 34 H 1.09001 * 110.75434 * 279.62900 * 6 5 3 35 35 H 1.09006 * 110.48218 * 203.37597 * 7 6 5 36 36 H 1.08997 * 110.48754 * 80.73690 * 7 6 5 37 37 H 0.96996 * 120.00339 * 0.02562 * 12 10 8 38 38 H 1.09003 * 109.47146 * 300.27360 * 13 12 10 39 39 H 1.08997 * 109.46977 * 60.27882 * 13 12 10 40 40 H 1.07992 * 119.99665 * 304.99894 * 14 13 12 41 41 H 1.08000 * 120.00678 * 0.02562 * 15 14 13 42 42 H 1.08999 * 109.47162 * 245.00220 * 16 15 14 43 43 H 1.08993 * 109.47711 * 5.00514 * 16 15 14 44 44 H 0.97006 * 120.00293 * 359.97438 * 17 16 15 45 45 H 0.97010 * 119.99940 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5875 1.9989 0.8208 5 6 1.7072 2.1207 -1.3450 6 6 2.9370 3.0173 -1.6329 7 6 4.1180 2.1475 -1.1351 8 6 3.5729 1.4596 0.1335 9 1 3.8643 2.0236 1.0195 10 6 4.0991 0.0502 0.2225 11 8 4.3409 -0.5719 -0.7902 12 7 4.3010 -0.5189 1.4274 13 6 4.8068 -1.8911 1.5138 14 6 4.9364 -2.2884 2.9618 15 6 4.3394 -3.3689 3.4003 16 6 4.4695 -3.7665 4.8481 17 7 3.1355 -3.9196 5.4341 18 6 3.0023 -4.2787 6.7488 19 1 3.8806 -4.4494 7.3537 20 6 1.7383 -4.4243 7.3039 21 7 0.6680 -4.2167 6.5667 22 14 1.5566 -4.9134 9.0975 23 1 2.2108 -3.8944 9.9573 24 1 0.1150 -5.0003 9.4433 25 1 2.1996 -6.2336 9.3182 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5877 1.3736 -2.1297 32 1 0.8060 2.7270 -1.2538 33 1 3.0277 3.2173 -2.7006 34 1 2.8774 3.9476 -1.0681 35 1 4.9763 2.7736 -0.8907 36 1 4.3879 1.4048 -1.8858 37 1 4.1073 -0.0215 2.2373 38 1 4.1133 -2.5663 1.0124 39 1 5.7829 -1.9495 1.0323 40 1 5.5212 -1.6824 3.6377 41 1 3.7549 -3.9752 2.7243 42 1 5.0079 -4.7116 4.9184 43 1 5.0175 -2.9951 5.3890 44 1 2.3466 -3.7659 4.8910 45 1 -0.2154 -4.3181 6.9547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754166016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:35 Heat of formation + Delta-G solvation = -37.215986 kcal Electronic energy + Delta-G solvation = -21731.133206 eV Core-core repulsion = 18554.996763 eV Total energy + Delta-G solvation = -3176.136443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56768 -37.75734 -36.18506 -34.68686 -33.27948 -32.81257 -30.75614 -29.57855 -27.76399 -26.95859 -24.23527 -22.99197 -22.13533 -21.41098 -20.76835 -19.90432 -18.93468 -17.13690 -16.91601 -16.40995 -15.76526 -15.20036 -14.93332 -14.62827 -14.52273 -13.92332 -13.85352 -13.44199 -13.35152 -13.26752 -12.92244 -12.54822 -12.21415 -12.02404 -11.83199 -11.71548 -11.41288 -11.23942 -11.05230 -11.02407 -10.83991 -10.82082 -10.70266 -10.62426 -10.55836 -10.12509 -9.84647 -9.78774 -9.20159 -8.97564 -8.71095 -6.96782 -5.79582 -3.09239 2.28340 2.63337 3.38547 3.42309 3.46573 3.47818 4.25250 4.35382 4.47644 4.57830 4.87594 4.98543 5.02798 5.07829 5.19528 5.20368 5.26313 5.34881 5.39972 5.46646 5.53243 5.54447 5.62650 5.65979 5.69527 5.79825 5.84495 5.90486 5.97051 6.00797 6.06359 6.12242 6.15243 6.16231 6.29882 6.38931 6.46783 6.56115 6.89668 7.13788 7.51876 7.65981 8.22572 8.38692 9.49932 10.06202 10.41576 11.43018 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021654 B = 0.003059 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.746520 B = 9151.372295 C = 9977.820919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.076 4.076 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.089 0.911 10 C 0.525 3.475 11 O -0.545 6.545 12 N -0.726 5.726 13 C 0.155 3.845 14 C -0.201 4.201 15 C -0.107 4.107 16 C 0.173 3.827 17 N -0.729 5.729 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.403 0.597 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 14.592 -15.776 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.095 4.095 4 H 0.099 0.901 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.133 4.133 9 H 0.108 0.892 10 C 0.312 3.688 11 O -0.422 6.422 12 N -0.377 5.377 13 C 0.032 3.968 14 C -0.220 4.220 15 C -0.126 4.126 16 C 0.046 3.954 17 N -0.374 5.374 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.118 14.069 -16.322 22.148 hybrid contribution -0.490 -0.073 1.400 1.485 sum 4.628 13.997 -14.922 20.976 Atomic orbital electron populations 1.21749 0.95437 1.01910 1.01577 1.21853 0.96502 0.95559 1.02994 1.21730 0.92025 0.97062 0.98714 0.90146 1.22450 0.97792 0.98526 0.96709 1.22486 0.94685 0.98001 1.00954 1.22362 0.97666 0.98784 0.96242 1.22059 0.96987 0.93371 1.00927 0.89236 1.20440 0.76585 0.88628 0.83191 1.90666 1.51753 1.64660 1.35162 1.46184 1.67095 1.15975 1.08437 1.20296 0.99271 0.82557 0.94665 1.22698 1.04164 0.99523 0.95661 1.23327 0.95241 0.96070 0.98011 1.19821 0.89882 0.97778 0.87953 1.42290 1.01324 1.83630 1.10140 1.19199 0.92271 1.38930 0.87041 0.91140 1.24762 0.95383 1.02484 0.98267 1.69658 0.97160 1.55773 1.35489 0.86239 0.76653 0.78404 0.84702 1.21222 1.21624 1.21193 0.92600 0.92665 0.92842 0.91093 0.91426 0.91181 0.91513 0.91378 0.91498 0.91550 0.89622 0.76301 0.91365 0.91255 0.86812 0.87324 0.95172 0.95706 0.78136 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.77 37.16 0.36 -1.18 16 2 C -0.13 -1.48 4.12 -26.73 -0.11 -1.59 16 3 C -0.08 -0.71 2.93 -89.50 -0.26 -0.98 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 5 C -0.12 -0.98 5.55 -25.07 -0.14 -1.12 16 6 C -0.12 -0.94 6.91 -24.73 -0.17 -1.11 16 7 C -0.11 -1.02 6.31 -25.07 -0.16 -1.18 16 8 C -0.11 -1.07 3.29 -90.65 -0.30 -1.37 16 9 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 10 C 0.52 6.51 4.68 -10.98 -0.05 6.46 16 11 O -0.54 -8.61 15.03 5.56 0.08 -8.53 16 12 N -0.73 -8.44 4.99 -61.46 -0.31 -8.75 16 13 C 0.15 1.98 6.11 -5.19 -0.03 1.95 16 14 C -0.20 -2.74 9.24 -36.02 -0.33 -3.07 16 15 C -0.11 -1.74 9.24 -36.03 -0.33 -2.07 16 16 C 0.17 3.46 6.70 -5.19 -0.03 3.42 16 17 N -0.73 -18.60 5.59 -61.09 -0.34 -18.95 16 18 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.48 7.52 -51.93 -0.39 0.09 16 29 H 0.07 0.92 7.12 -51.93 -0.37 0.55 16 30 H 0.07 0.85 6.79 -51.93 -0.35 0.50 16 31 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.96 6.88 -51.93 -0.36 0.60 16 37 H 0.40 4.03 8.46 -40.82 -0.35 3.68 16 38 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.11 1.47 7.84 -52.49 -0.41 1.05 16 41 H 0.11 1.75 7.84 -52.49 -0.41 1.34 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 44 H 0.39 10.32 7.66 -40.82 -0.31 10.01 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -31.72 360.90 -9.17 -40.89 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.94 Total: 9.36 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.81 Total: -9.29 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.08 Total: -55.16 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.72 -9.17 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754166016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.670 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds