Wall clock time and date at job start Tue Mar 31 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47230 * 2 1 4 4 H 1.09000 * 110.05597 * 53.28399 * 3 2 1 5 5 C 1.54266 * 110.03409 * 291.87039 * 3 2 1 6 6 C 1.54893 * 104.19732 * 217.10386 * 5 3 2 7 7 C 1.54891 * 102.74429 * 37.94059 * 6 5 3 8 8 C 1.53878 * 110.03399 * 174.70120 * 3 2 1 9 9 H 1.09001 * 110.03186 * 238.61752 * 8 3 2 10 10 C 1.50702 * 110.02900 * 0.02562 * 8 3 2 11 11 O 1.21280 * 120.00056 * 86.42182 * 10 8 3 12 12 N 1.34777 * 119.99645 * 266.41650 * 10 8 3 13 13 C 1.46505 * 119.99622 * 179.72859 * 12 10 8 14 14 C 1.50707 * 109.46778 * 180.27719 * 13 12 10 15 15 C 1.30998 * 119.99474 * 124.99797 * 14 13 12 16 16 C 1.50699 * 119.99356 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46970 * 125.00393 * 16 15 14 18 18 C 1.36938 * 120.00243 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00084 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00061 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99766 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47312 * 59.99867 * 22 20 18 24 24 H 1.48504 * 109.47132 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47286 * 300.00055 * 22 20 18 26 26 H 1.08997 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46962 * 299.99963 * 1 2 3 28 28 H 1.09001 * 109.46843 * 60.00125 * 1 2 3 29 29 H 1.08997 * 109.46962 * 240.00037 * 2 1 3 30 30 H 1.08997 * 109.46980 * 120.00358 * 2 1 3 31 31 H 1.08997 * 110.48504 * 335.78259 * 5 3 2 32 32 H 1.09002 * 110.48398 * 98.42554 * 5 3 2 33 33 H 1.09001 * 110.75690 * 156.25526 * 6 5 3 34 34 H 1.09001 * 110.75434 * 279.62900 * 6 5 3 35 35 H 1.09006 * 110.48218 * 203.37597 * 7 6 5 36 36 H 1.08997 * 110.48754 * 80.73690 * 7 6 5 37 37 H 0.96996 * 120.00339 * 0.02562 * 12 10 8 38 38 H 1.09003 * 109.47146 * 300.27360 * 13 12 10 39 39 H 1.08997 * 109.46977 * 60.27882 * 13 12 10 40 40 H 1.07992 * 119.99665 * 304.99894 * 14 13 12 41 41 H 1.08000 * 120.00678 * 0.02562 * 15 14 13 42 42 H 1.08999 * 109.47162 * 245.00220 * 16 15 14 43 43 H 1.08993 * 109.47711 * 5.00514 * 16 15 14 44 44 H 0.97006 * 120.00293 * 359.97438 * 17 16 15 45 45 H 0.97010 * 119.99940 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5875 1.9989 0.8208 5 6 1.7072 2.1207 -1.3450 6 6 2.9370 3.0173 -1.6329 7 6 4.1180 2.1475 -1.1351 8 6 3.5729 1.4596 0.1335 9 1 3.8643 2.0236 1.0195 10 6 4.0991 0.0502 0.2225 11 8 4.3409 -0.5719 -0.7902 12 7 4.3010 -0.5189 1.4274 13 6 4.8068 -1.8911 1.5138 14 6 4.9364 -2.2884 2.9618 15 6 4.3394 -3.3689 3.4003 16 6 4.4695 -3.7665 4.8481 17 7 3.1355 -3.9196 5.4341 18 6 3.0023 -4.2787 6.7488 19 1 3.8806 -4.4494 7.3537 20 6 1.7383 -4.4243 7.3039 21 7 0.6680 -4.2167 6.5667 22 14 1.5566 -4.9134 9.0975 23 1 2.2108 -3.8944 9.9573 24 1 0.1150 -5.0003 9.4433 25 1 2.1996 -6.2336 9.3182 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5877 1.3736 -2.1297 32 1 0.8060 2.7270 -1.2538 33 1 3.0277 3.2173 -2.7006 34 1 2.8774 3.9476 -1.0681 35 1 4.9763 2.7736 -0.8907 36 1 4.3879 1.4048 -1.8858 37 1 4.1073 -0.0215 2.2373 38 1 4.1133 -2.5663 1.0124 39 1 5.7829 -1.9495 1.0323 40 1 5.5212 -1.6824 3.6377 41 1 3.7549 -3.9752 2.7243 42 1 5.0079 -4.7116 4.9184 43 1 5.0175 -2.9951 5.3890 44 1 2.3466 -3.7659 4.8910 45 1 -0.2154 -4.3181 6.9547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754166016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:34 Heat of formation + Delta-G solvation = -56.736496 kcal Electronic energy + Delta-G solvation = -21731.979679 eV Core-core repulsion = 18554.996763 eV Total energy + Delta-G solvation = -3176.982916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48718 -38.64375 -37.57937 -36.19446 -34.43161 -34.04030 -32.48713 -30.52885 -28.56453 -28.33306 -25.91175 -23.98502 -23.60739 -22.42485 -21.47726 -21.07862 -20.00393 -19.09994 -17.84811 -17.32218 -16.80722 -16.63578 -16.15134 -15.82349 -15.42942 -15.32405 -15.20250 -15.01315 -14.49168 -14.31890 -14.13602 -13.54485 -13.45952 -13.28942 -13.00743 -12.87256 -12.71013 -12.48134 -12.24820 -12.22497 -12.00310 -11.87676 -11.81686 -11.77563 -11.50498 -11.46943 -11.36512 -11.05170 -10.82349 -10.30415 -9.94752 -9.02462 -7.96481 -5.26675 1.05161 1.47882 1.50968 1.57301 1.65581 2.40328 2.56699 3.37102 3.50566 3.63285 3.70065 3.73994 4.05758 4.10424 4.19787 4.22340 4.36435 4.40377 4.44951 4.54005 4.60394 4.65378 4.68132 4.71592 4.77188 4.79878 4.87371 4.91137 4.98931 5.04980 5.13058 5.17146 5.22915 5.26482 5.33793 5.38698 5.44638 5.46574 5.54562 5.64552 5.82229 6.25216 6.57278 7.26234 7.31353 8.05189 8.29441 9.26729 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021654 B = 0.003059 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.746520 B = 9151.372295 C = 9977.820919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.075 4.075 4 H 0.097 0.903 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.110 4.110 9 H 0.116 0.884 10 C 0.523 3.477 11 O -0.583 6.583 12 N -0.720 5.720 13 C 0.158 3.842 14 C -0.160 4.160 15 C -0.133 4.133 16 C 0.174 3.826 17 N -0.744 5.744 18 C -0.251 4.251 19 H 0.078 0.922 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.977 3.023 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.278 1.278 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.030 0.970 43 H 0.034 0.966 44 H 0.374 0.626 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 16.578 -15.155 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.093 4.093 4 H 0.116 0.884 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.131 4.131 9 H 0.134 0.866 10 C 0.311 3.689 11 O -0.464 6.464 12 N -0.371 5.371 13 C 0.034 3.966 14 C -0.179 4.179 15 C -0.152 4.152 16 C 0.049 3.951 17 N -0.387 5.387 18 C -0.383 4.383 19 H 0.096 0.904 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.805 3.195 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.204 1.204 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.249 0.751 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.206 0.794 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.873 16.067 -15.689 23.212 hybrid contribution -0.620 -0.678 1.122 1.451 sum 5.253 15.388 -14.567 21.831 Atomic orbital electron populations 1.21737 0.94722 1.01477 1.02532 1.21779 0.97145 0.96753 1.00915 1.21773 0.91814 0.95743 1.00010 0.88450 1.22451 0.98997 0.98461 0.95558 1.22483 0.93201 0.98130 1.01630 1.22359 0.98954 0.98538 0.95296 1.22162 0.97024 0.91528 1.02394 0.86610 1.20992 0.75726 0.89601 0.82558 1.90652 1.53401 1.65847 1.36459 1.46113 1.66684 1.15414 1.08921 1.20180 0.99384 0.83135 0.93855 1.22779 1.01447 0.97680 0.95988 1.22992 0.98097 0.97978 0.96161 1.19898 0.87362 0.97950 0.89936 1.42526 1.03061 1.83571 1.09554 1.19637 0.92583 1.37792 0.88274 0.90421 1.25621 0.95177 1.03327 1.02592 1.69822 0.97367 1.57496 1.37249 0.85171 0.76228 0.78384 0.79718 1.20122 1.22086 1.20368 0.93800 0.92010 0.91495 0.93518 0.93127 0.92696 0.89917 0.90825 0.89623 0.90057 0.92295 0.75086 0.92770 0.90525 0.85118 0.87718 0.95274 0.94853 0.79422 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.77 71.98 0.70 -2.27 16 2 C -0.13 -2.88 4.12 30.59 0.13 -2.75 16 3 C -0.07 -1.26 2.93 -10.07 -0.03 -1.29 16 4 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 5 C -0.12 -1.74 5.55 31.67 0.18 -1.57 16 6 C -0.12 -1.49 6.91 31.89 0.22 -1.27 16 7 C -0.11 -1.88 6.31 31.67 0.20 -1.68 16 8 C -0.11 -1.90 3.29 -10.81 -0.04 -1.94 16 9 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 10 C 0.52 12.65 4.68 87.66 0.41 13.07 16 11 O -0.58 -18.76 15.03 -3.03 -0.05 -18.80 16 12 N -0.72 -15.90 4.99 -466.76 -2.33 -18.23 16 13 C 0.16 3.90 6.11 85.63 0.52 4.42 16 14 C -0.16 -4.10 9.24 25.65 0.24 -3.87 16 15 C -0.13 -4.27 9.24 25.65 0.24 -4.03 16 16 C 0.17 6.90 6.70 85.63 0.57 7.48 16 17 N -0.74 -38.20 5.59 -347.18 -1.94 -40.14 16 18 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 22 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.15 7.52 -2.39 -0.02 1.13 16 29 H 0.05 1.26 7.12 -2.39 -0.02 1.25 16 30 H 0.05 1.28 6.79 -2.39 -0.02 1.27 16 31 H 0.05 0.98 7.75 -2.39 -0.02 0.96 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.06 1.31 6.88 -2.39 -0.02 1.29 16 37 H 0.41 7.43 8.46 -92.71 -0.78 6.64 16 38 H 0.05 1.52 7.79 -2.39 -0.02 1.50 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.13 2.99 7.84 -2.91 -0.02 2.96 16 41 H 0.10 3.44 7.84 -2.91 -0.02 3.42 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.03 1.27 7.79 -2.39 -0.02 1.26 16 44 H 0.37 20.48 7.66 -92.70 -0.71 19.77 16 45 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -68.75 360.90 2.11 -66.64 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -0.53 Total: 34.58 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.65 Total: -12.78 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -3.99 Total: -117.45 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -68.75 2.11 -66.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754166016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.903 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds