Wall clock time and date at job start Tue Mar 31 2020 02:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 H 1.09002 * 110.01989 * 53.00439 * 3 2 1 5 5 C 1.54273 * 110.03064 * 291.61615 * 3 2 1 6 6 C 1.55015 * 104.13335 * 217.06581 * 5 3 2 7 7 C 1.54885 * 102.75870 * 37.95363 * 6 5 3 8 8 C 1.53873 * 110.03567 * 174.39810 * 3 2 1 9 9 H 1.08995 * 110.03653 * 238.66579 * 8 3 2 10 10 C 1.50704 * 110.02871 * 0.04969 * 8 3 2 11 11 O 1.21280 * 120.00282 * 86.11992 * 10 8 3 12 12 N 1.34774 * 119.99838 * 266.11778 * 10 8 3 13 13 C 1.46501 * 120.00216 * 180.02562 * 12 10 8 14 14 C 1.52992 * 109.47095 * 184.80809 * 13 12 10 15 15 N 1.46496 * 115.55422 * 279.54710 * 14 13 12 16 16 C 1.36939 * 120.00262 * 297.20810 * 15 14 13 17 17 H 1.08002 * 119.99822 * 4.73458 * 16 15 14 18 18 C 1.38815 * 120.00167 * 184.73777 * 16 15 14 19 19 N 1.31619 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99900 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47223 * 90.00159 * 20 18 16 22 22 H 1.48508 * 109.47087 * 210.00001 * 20 18 16 23 23 H 1.48502 * 109.47493 * 330.00018 * 20 18 16 24 24 C 1.53008 * 117.49739 * 133.88374 * 14 13 12 25 25 C 1.52998 * 117.50096 * 65.22524 * 14 13 12 26 26 H 1.08999 * 109.47245 * 59.99724 * 1 2 3 27 27 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46490 * 300.00112 * 1 2 3 29 29 H 1.09004 * 109.47305 * 240.00301 * 2 1 3 30 30 H 1.08997 * 109.47372 * 119.99741 * 2 1 3 31 31 H 1.09000 * 110.48449 * 335.73211 * 5 3 2 32 32 H 1.08996 * 110.48431 * 98.37937 * 5 3 2 33 33 H 1.08999 * 110.76739 * 279.62394 * 6 5 3 34 34 H 1.09003 * 110.89667 * 156.33831 * 6 5 3 35 35 H 1.08995 * 110.48882 * 203.36723 * 7 6 5 36 36 H 1.09003 * 110.60371 * 80.77476 * 7 6 5 37 37 H 0.97005 * 119.99947 * 0.02562 * 12 10 8 38 38 H 1.08997 * 109.47096 * 304.81411 * 13 12 10 39 39 H 1.09003 * 109.46490 * 64.80950 * 13 12 10 40 40 H 0.97001 * 119.99971 * 117.20465 * 15 14 13 41 41 H 0.96999 * 119.99819 * 180.02562 * 19 18 16 42 42 H 1.08999 * 117.49498 * 359.97438 * 24 14 13 43 43 H 1.08998 * 117.50451 * 145.02308 * 24 14 13 44 44 H 1.09005 * 117.49927 * 214.97883 * 25 14 13 45 45 H 1.09008 * 117.49654 * 359.96783 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5834 1.9997 0.8180 5 6 1.7128 2.1187 -1.3475 6 6 2.9450 3.0158 -1.6299 7 6 4.1237 2.1468 -1.1254 8 6 3.5722 1.4599 0.1411 9 1 3.8591 2.0248 1.0280 10 6 4.0980 0.0507 0.2346 11 8 4.3397 -0.5747 -0.7760 12 7 4.2996 -0.5147 1.4413 13 6 4.8113 -1.8844 1.5323 14 6 4.8346 -2.3238 2.9975 15 7 5.9775 -1.8491 3.7815 16 6 7.2473 -2.2345 3.4434 17 1 7.4136 -2.8253 2.5547 18 6 8.3206 -1.8658 4.2427 19 7 8.1177 -1.1463 5.3260 20 14 10.0525 -2.3922 3.7818 21 1 10.6679 -1.3600 2.9094 22 1 10.8668 -2.5484 5.0139 23 1 9.9999 -3.6866 3.0558 24 6 4.2783 -3.7103 3.3282 25 6 3.4908 -2.4564 3.7168 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5975 1.3704 -2.1317 32 1 0.8108 2.7244 -1.2611 33 1 2.8825 3.9468 -1.0664 34 1 3.0427 3.2176 -2.6966 35 1 4.9806 2.7730 -0.8773 36 1 4.3995 1.4032 -1.8732 37 1 4.1060 -0.0146 2.2496 38 1 4.1649 -2.5522 0.9628 39 1 5.8218 -1.9224 1.1253 40 1 5.8348 -1.2617 4.5401 41 1 8.8678 -0.8884 5.8844 42 1 3.8953 -4.3090 2.5019 43 1 4.7622 -4.2689 4.1293 44 1 3.4571 -2.1907 4.7734 45 1 2.5900 -2.2301 3.1462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754523968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:39 Heat of formation + Delta-G solvation = -25.867194 kcal Electronic energy + Delta-G solvation = -22833.402037 eV Core-core repulsion = 19657.757714 eV Total energy + Delta-G solvation = -3175.644322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.30194 -37.98257 -36.94323 -33.74570 -33.15438 -33.00272 -29.76678 -29.57445 -27.67023 -26.22529 -23.91017 -22.93137 -21.99674 -21.24842 -20.60223 -19.46161 -18.59488 -17.13701 -16.67222 -16.10924 -15.66475 -15.25860 -14.70889 -14.50548 -14.29981 -14.04502 -13.73302 -13.31443 -13.19386 -13.06433 -12.69748 -12.23856 -11.95260 -11.87502 -11.54933 -11.33469 -11.09770 -11.00472 -10.96396 -10.90394 -10.86274 -10.69411 -10.56640 -10.47715 -10.30296 -10.24999 -9.71560 -9.53751 -9.28393 -8.83967 -8.53807 -7.07225 -5.84716 -3.15038 2.98459 3.40892 3.46818 3.47984 3.53253 4.40382 4.44472 4.51699 4.57744 4.67051 5.07175 5.11999 5.19958 5.23554 5.27196 5.31831 5.45204 5.47543 5.47619 5.50358 5.57301 5.62841 5.64422 5.75188 5.81448 5.82542 5.95748 5.97104 6.04921 6.08739 6.12644 6.21368 6.25206 6.35201 6.37767 6.43797 6.57414 6.66733 6.77969 6.91517 7.68414 7.94982 8.33455 8.61722 9.44832 9.98115 10.33352 11.37250 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.004464 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.624245 B = 6270.468319 C = 7108.106248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.089 0.911 10 C 0.522 3.478 11 O -0.551 6.551 12 N -0.712 5.712 13 C 0.148 3.852 14 C 0.130 3.870 15 N -0.689 5.689 16 C -0.238 4.238 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C -0.190 4.190 25 C -0.185 4.185 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.400 0.600 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.387 0.613 41 H 0.256 0.744 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.274 6.315 -9.448 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.134 4.134 9 H 0.107 0.893 10 C 0.309 3.691 11 O -0.430 6.430 12 N -0.362 5.362 13 C 0.023 3.977 14 C 0.035 3.965 15 N -0.328 5.328 16 C -0.369 4.369 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.231 4.231 25 C -0.223 4.223 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.234 0.766 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.222 0.778 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.887 5.781 -10.188 18.943 hybrid contribution 0.959 0.100 0.690 1.186 sum -13.928 5.881 -9.498 17.854 Atomic orbital electron populations 1.21755 0.95822 1.01465 1.01505 1.21852 0.95937 0.95902 1.03168 1.21699 0.92516 0.96732 0.98438 0.90430 1.22459 0.97675 0.98495 0.96755 1.22495 0.94763 0.97974 1.00838 1.22352 0.97583 0.98800 0.96352 1.22036 0.96469 0.93973 1.00894 0.89291 1.20326 0.77029 0.88371 0.83406 1.90642 1.52441 1.64433 1.35463 1.46019 1.65876 1.16348 1.07937 1.21190 0.99398 0.81526 0.95596 1.20170 0.88311 0.97363 0.90615 1.41786 1.00199 1.56819 1.33996 1.19168 0.83303 1.27896 1.06499 0.90984 1.24745 0.98078 1.00652 0.97050 1.69657 1.30507 1.41911 1.15895 0.86184 0.84552 0.78305 0.77140 1.21638 1.21735 1.20600 1.23394 1.04387 0.91957 1.03319 1.23062 0.94564 1.03826 1.00860 0.92812 0.92921 0.92909 0.90940 0.91463 0.91265 0.91736 0.91597 0.91499 0.91492 0.89621 0.76616 0.92304 0.90799 0.77759 0.93423 0.90010 0.88672 0.89071 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.77 37.16 0.36 -1.01 16 2 C -0.13 -1.49 4.13 -26.73 -0.11 -1.60 16 3 C -0.07 -0.78 2.92 -89.50 -0.26 -1.04 16 4 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.12 -1.09 5.57 -25.00 -0.14 -1.23 16 6 C -0.12 -1.15 6.91 -24.67 -0.17 -1.32 16 7 C -0.11 -1.34 6.32 -25.07 -0.16 -1.50 16 8 C -0.11 -1.38 3.29 -90.65 -0.30 -1.68 16 9 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 10 C 0.52 8.27 4.68 -10.98 -0.05 8.22 16 11 O -0.55 -10.55 15.03 5.56 0.08 -10.47 16 12 N -0.71 -11.35 4.96 -60.30 -0.30 -11.65 16 13 C 0.15 2.71 5.71 -4.05 -0.02 2.69 16 14 C 0.13 2.46 2.17 -131.82 -0.29 2.18 16 15 N -0.69 -16.39 5.50 -47.23 -0.26 -16.65 16 16 C -0.24 -6.41 9.51 -15.06 -0.14 -6.55 16 17 H 0.07 1.93 7.62 -52.49 -0.40 1.53 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 19 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.19 -3.30 10.11 -26.69 -0.27 -3.57 16 25 C -0.19 -2.93 10.14 -26.69 -0.27 -3.20 16 26 H 0.05 0.46 7.53 -51.93 -0.39 0.06 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.98 7.12 -51.93 -0.37 0.61 16 30 H 0.07 0.83 6.78 -51.93 -0.35 0.48 16 31 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.20 6.89 -51.93 -0.36 0.84 16 37 H 0.40 5.87 8.48 -40.82 -0.35 5.52 16 38 H 0.06 1.03 7.94 -51.93 -0.41 0.62 16 39 H 0.07 1.58 7.54 -51.93 -0.39 1.19 16 40 H 0.39 9.79 8.04 -40.82 -0.33 9.47 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 43 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.09 1.19 8.14 -51.92 -0.42 0.76 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -30.05 357.80 -9.25 -39.31 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -7.96 Total: 13.44 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.91 Total: -9.97 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.17 Total: -54.94 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.05 -9.25 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754523968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.441 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds