Wall clock time and date at job start Tue Mar 31 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 H 1.09002 * 110.01989 * 53.00439 * 3 2 1 5 5 C 1.54273 * 110.03064 * 291.61615 * 3 2 1 6 6 C 1.55015 * 104.13335 * 217.06581 * 5 3 2 7 7 C 1.54885 * 102.75870 * 37.95363 * 6 5 3 8 8 C 1.53873 * 110.03567 * 174.39810 * 3 2 1 9 9 H 1.08995 * 110.03653 * 238.66579 * 8 3 2 10 10 C 1.50704 * 110.02871 * 0.04969 * 8 3 2 11 11 O 1.21280 * 120.00282 * 86.11992 * 10 8 3 12 12 N 1.34774 * 119.99838 * 266.11778 * 10 8 3 13 13 C 1.46501 * 120.00216 * 180.02562 * 12 10 8 14 14 C 1.52992 * 109.47095 * 184.80809 * 13 12 10 15 15 N 1.46496 * 115.55422 * 279.54710 * 14 13 12 16 16 C 1.36939 * 120.00262 * 297.20810 * 15 14 13 17 17 H 1.08002 * 119.99822 * 4.73458 * 16 15 14 18 18 C 1.38815 * 120.00167 * 184.73777 * 16 15 14 19 19 N 1.31619 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99900 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47223 * 90.00159 * 20 18 16 22 22 H 1.48508 * 109.47087 * 210.00001 * 20 18 16 23 23 H 1.48502 * 109.47493 * 330.00018 * 20 18 16 24 24 C 1.53008 * 117.49739 * 133.88374 * 14 13 12 25 25 C 1.52998 * 117.50096 * 65.22524 * 14 13 12 26 26 H 1.08999 * 109.47245 * 59.99724 * 1 2 3 27 27 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46490 * 300.00112 * 1 2 3 29 29 H 1.09004 * 109.47305 * 240.00301 * 2 1 3 30 30 H 1.08997 * 109.47372 * 119.99741 * 2 1 3 31 31 H 1.09000 * 110.48449 * 335.73211 * 5 3 2 32 32 H 1.08996 * 110.48431 * 98.37937 * 5 3 2 33 33 H 1.08999 * 110.76739 * 279.62394 * 6 5 3 34 34 H 1.09003 * 110.89667 * 156.33831 * 6 5 3 35 35 H 1.08995 * 110.48882 * 203.36723 * 7 6 5 36 36 H 1.09003 * 110.60371 * 80.77476 * 7 6 5 37 37 H 0.97005 * 119.99947 * 0.02562 * 12 10 8 38 38 H 1.08997 * 109.47096 * 304.81411 * 13 12 10 39 39 H 1.09003 * 109.46490 * 64.80950 * 13 12 10 40 40 H 0.97001 * 119.99971 * 117.20465 * 15 14 13 41 41 H 0.96999 * 119.99819 * 180.02562 * 19 18 16 42 42 H 1.08999 * 117.49498 * 359.97438 * 24 14 13 43 43 H 1.08998 * 117.50451 * 145.02308 * 24 14 13 44 44 H 1.09005 * 117.49927 * 214.97883 * 25 14 13 45 45 H 1.09008 * 117.49654 * 359.96783 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5834 1.9997 0.8180 5 6 1.7128 2.1187 -1.3475 6 6 2.9450 3.0158 -1.6299 7 6 4.1237 2.1468 -1.1254 8 6 3.5722 1.4599 0.1411 9 1 3.8591 2.0248 1.0280 10 6 4.0980 0.0507 0.2346 11 8 4.3397 -0.5747 -0.7760 12 7 4.2996 -0.5147 1.4413 13 6 4.8113 -1.8844 1.5323 14 6 4.8346 -2.3238 2.9975 15 7 5.9775 -1.8491 3.7815 16 6 7.2473 -2.2345 3.4434 17 1 7.4136 -2.8253 2.5547 18 6 8.3206 -1.8658 4.2427 19 7 8.1177 -1.1463 5.3260 20 14 10.0525 -2.3922 3.7818 21 1 10.6679 -1.3600 2.9094 22 1 10.8668 -2.5484 5.0139 23 1 9.9999 -3.6866 3.0558 24 6 4.2783 -3.7103 3.3282 25 6 3.4908 -2.4564 3.7168 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5975 1.3704 -2.1317 32 1 0.8108 2.7244 -1.2611 33 1 2.8825 3.9468 -1.0664 34 1 3.0427 3.2176 -2.6966 35 1 4.9806 2.7730 -0.8773 36 1 4.3995 1.4032 -1.8732 37 1 4.1060 -0.0146 2.2496 38 1 4.1649 -2.5522 0.9628 39 1 5.8218 -1.9224 1.1253 40 1 5.8348 -1.2617 4.5401 41 1 8.8678 -0.8884 5.8844 42 1 3.8953 -4.3090 2.5019 43 1 4.7622 -4.2689 4.1293 44 1 3.4571 -2.1907 4.7734 45 1 2.5900 -2.2301 3.1462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754523968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:38 Heat of formation + Delta-G solvation = -44.161601 kcal Electronic energy + Delta-G solvation = -22834.195342 eV Core-core repulsion = 19657.757714 eV Total energy + Delta-G solvation = -3176.437627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46111 -39.34048 -38.16135 -35.29827 -34.80177 -33.99900 -31.66922 -30.62462 -28.48375 -27.56910 -25.95265 -23.79605 -23.32126 -22.40808 -21.45836 -20.88868 -19.88179 -19.14552 -17.84190 -17.31108 -17.02542 -16.50574 -16.11728 -15.74675 -15.59169 -15.26325 -15.14934 -14.92740 -14.38270 -14.13925 -13.82543 -13.58576 -13.28981 -12.97235 -12.92684 -12.85550 -12.44398 -12.32107 -12.23143 -12.16770 -12.00350 -11.86995 -11.76306 -11.61995 -11.48034 -11.44403 -11.31242 -10.98705 -10.90976 -10.49018 -9.94972 -9.03537 -7.97910 -5.26377 1.44717 1.45528 1.53587 1.72594 2.25228 2.51547 3.08957 3.36795 3.53657 3.64399 3.66328 3.74517 3.83720 4.12814 4.18168 4.25240 4.30509 4.38130 4.44963 4.55627 4.63726 4.71057 4.77478 4.80087 4.80463 4.82519 4.92545 4.93871 5.02357 5.06511 5.16758 5.16919 5.21324 5.25293 5.28816 5.36787 5.41259 5.45936 5.53111 5.55158 5.58080 6.25217 6.67466 7.31475 7.34278 8.04466 8.28460 9.24481 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.004464 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.624245 B = 6270.468319 C = 7108.106248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C -0.071 4.071 4 H 0.101 0.899 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.111 4.111 9 H 0.104 0.896 10 C 0.520 3.480 11 O -0.589 6.589 12 N -0.708 5.708 13 C 0.162 3.838 14 C 0.102 3.898 15 N -0.697 5.697 16 C -0.231 4.231 17 H 0.067 0.933 18 C -0.066 4.066 19 N -0.964 5.964 20 Si 0.963 3.037 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.273 1.273 24 C -0.188 4.188 25 C -0.150 4.150 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.408 0.592 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.392 7.276 -9.700 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.090 4.090 4 H 0.119 0.881 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.156 4.156 8 C -0.132 4.132 9 H 0.123 0.877 10 C 0.309 3.691 11 O -0.470 6.470 12 N -0.357 5.357 13 C 0.036 3.964 14 C 0.010 3.990 15 N -0.336 5.336 16 C -0.363 4.363 17 H 0.085 0.915 18 C -0.259 4.259 19 N -0.614 5.614 20 Si 0.793 3.207 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.198 1.198 24 C -0.229 4.229 25 C -0.188 4.188 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.243 0.757 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.211 0.789 41 H 0.060 0.940 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.043 6.729 -10.460 21.099 hybrid contribution 1.564 -0.245 0.704 1.733 sum -15.479 6.484 -9.756 19.412 Atomic orbital electron populations 1.21718 0.93945 1.01767 1.02609 1.21785 0.97549 0.96159 1.01128 1.21764 0.90762 0.96482 0.99980 0.88069 1.22459 0.98659 0.98373 0.95629 1.22487 0.93204 0.98077 1.01518 1.22369 0.99035 0.98611 0.95564 1.22152 0.98016 0.91310 1.01729 0.87744 1.21014 0.76000 0.89563 0.82544 1.90625 1.54004 1.65710 1.36682 1.45982 1.65585 1.15625 1.08540 1.20863 0.97509 0.83098 0.94909 1.20343 0.88848 0.99115 0.90718 1.41804 1.00641 1.56940 1.34203 1.19394 0.84872 1.26404 1.05647 0.91487 1.25401 1.01257 1.01703 0.97514 1.69779 1.30947 1.43678 1.17006 0.85295 0.80793 0.78036 0.76595 1.21800 1.21938 1.19840 1.23395 1.04274 0.91713 1.03502 1.23123 0.93599 1.01126 1.00931 0.91927 0.93116 0.91513 0.93889 0.92594 0.92551 0.89316 0.89717 0.90818 0.91215 0.92484 0.75681 0.91410 0.94737 0.78864 0.93983 0.87798 0.90388 0.88926 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.77 71.98 0.70 -1.58 16 2 C -0.13 -2.72 4.13 30.60 0.13 -2.60 16 3 C -0.07 -1.30 2.92 -10.07 -0.03 -1.33 16 4 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 5 C -0.11 -1.83 5.57 31.72 0.18 -1.66 16 6 C -0.12 -1.88 6.91 31.93 0.22 -1.66 16 7 C -0.12 -2.71 6.32 31.67 0.20 -2.51 16 8 C -0.11 -2.57 3.29 -10.81 -0.04 -2.61 16 9 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 10 C 0.52 16.46 4.68 87.66 0.41 16.87 16 11 O -0.59 -23.22 15.03 -3.03 -0.05 -23.26 16 12 N -0.71 -22.28 4.96 -463.07 -2.30 -24.57 16 13 C 0.16 5.95 5.71 86.38 0.49 6.44 16 14 C 0.10 3.82 2.17 3.60 0.01 3.83 16 15 N -0.70 -33.47 5.50 -303.35 -1.67 -35.14 16 16 C -0.23 -12.64 9.51 84.03 0.80 -11.85 16 17 H 0.07 3.66 7.62 -2.91 -0.02 3.64 16 18 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 19 N -0.96 -57.47 13.06 21.65 0.28 -57.19 16 20 Si 0.96 46.41 29.55 68.60 2.03 48.44 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 24 C -0.19 -6.28 10.11 30.62 0.31 -5.97 16 25 C -0.15 -4.39 10.14 30.62 0.31 -4.08 16 26 H 0.06 0.89 7.53 -2.39 -0.02 0.87 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.04 1.16 7.12 -2.38 -0.02 1.14 16 30 H 0.06 1.29 6.78 -2.39 -0.02 1.27 16 31 H 0.06 1.06 7.75 -2.39 -0.02 1.04 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.64 6.89 -2.39 -0.02 1.63 16 37 H 0.41 11.52 8.48 -92.70 -0.79 10.73 16 38 H 0.07 2.35 7.94 -2.39 -0.02 2.33 16 39 H 0.03 1.53 7.54 -2.39 -0.02 1.51 16 40 H 0.38 19.31 8.04 -92.71 -0.75 18.57 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 42 H 0.10 2.99 8.08 -2.39 -0.02 2.98 16 43 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 45 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -66.41 357.80 1.90 -64.51 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -0.56 Total: 39.19 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 4.16 Total: -11.97 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -3.68 Total: -116.90 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -66.41 1.90 -64.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754523968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.351 kcal (2) G-P(sol) polarization free energy of solvation -66.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds