Wall clock time and date at job start Tue Mar 31 2020 02:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47037 * 2 1 4 4 H 1.09001 * 110.05822 * 307.19831 * 3 2 1 5 5 C 1.54376 * 110.04290 * 68.66619 * 3 2 1 6 6 C 1.54889 * 104.19647 * 142.91006 * 5 3 2 7 7 C 1.54892 * 102.75123 * 322.03045 * 6 5 3 8 8 C 1.53872 * 110.03476 * 185.77482 * 3 2 1 9 9 H 1.08996 * 110.02886 * 121.38260 * 8 3 2 10 10 C 1.50696 * 110.03082 * 0.02562 * 8 3 2 11 11 O 1.21289 * 120.00155 * 275.98374 * 10 8 3 12 12 N 1.34773 * 120.00349 * 95.98351 * 10 8 3 13 13 C 1.46503 * 120.00241 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47164 * 174.74982 * 13 12 10 15 15 N 1.46496 * 115.56228 * 325.13844 * 14 13 12 16 16 C 1.36936 * 119.99724 * 270.13987 * 15 14 13 17 17 H 1.08007 * 120.00293 * 5.18221 * 16 15 14 18 18 C 1.38817 * 120.00262 * 185.18336 * 16 15 14 19 19 N 1.31620 * 119.99633 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00177 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46829 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46869 * 119.99536 * 20 18 16 23 23 H 1.48503 * 109.47037 * 239.99624 * 20 18 16 24 24 C 1.53001 * 117.49699 * 179.44226 * 14 13 12 25 25 C 1.52999 * 117.49406 * 110.81895 * 14 13 12 26 26 H 1.08995 * 109.47414 * 60.00116 * 1 2 3 27 27 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47387 * 299.99283 * 1 2 3 29 29 H 1.09000 * 109.46972 * 240.00377 * 2 1 3 30 30 H 1.08995 * 109.47414 * 119.99884 * 2 1 3 31 31 H 1.09007 * 110.50948 * 24.22277 * 5 3 2 32 32 H 1.08996 * 110.46823 * 261.57655 * 5 3 2 33 33 H 1.09000 * 110.75694 * 203.71639 * 6 5 3 34 34 H 1.09004 * 110.91722 * 80.41586 * 6 5 3 35 35 H 1.09000 * 110.48928 * 279.26646 * 7 6 5 36 36 H 1.08993 * 110.49084 * 156.61618 * 7 6 5 37 37 H 0.97000 * 120.00207 * 359.97438 * 12 10 8 38 38 H 1.09006 * 109.46601 * 54.75847 * 13 12 10 39 39 H 1.08990 * 109.47286 * 294.75545 * 13 12 10 40 40 H 0.97002 * 120.00578 * 90.14386 * 15 14 13 41 41 H 0.97001 * 120.00058 * 180.02562 * 19 18 16 42 42 H 1.09005 * 117.49533 * 145.02853 * 24 14 13 43 43 H 1.08998 * 117.50084 * 0.02562 * 24 14 13 44 44 H 1.08999 * 117.50391 * 0.02562 * 25 14 13 45 45 H 1.08997 * 117.51827 * 214.97045 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5810 2.0013 -0.8156 5 6 1.7189 2.1172 1.3509 6 6 2.9510 3.0132 1.6303 7 6 4.1279 2.1450 1.1201 8 6 3.5717 1.4601 -0.1455 9 1 3.8560 2.0267 -1.0322 10 6 4.0971 0.0511 -0.2437 11 8 4.3055 -0.5901 0.7645 12 7 4.3354 -0.4966 -1.4518 13 6 4.8467 -1.8662 -1.5473 14 6 4.9048 -2.2876 -3.0170 15 7 3.8368 -1.7587 -3.8689 16 6 2.6701 -2.4597 -4.0188 17 1 2.5030 -3.3593 -3.4449 18 6 1.7021 -2.0143 -4.9085 19 7 1.9055 -0.9178 -5.6076 20 14 0.1102 -2.9703 -5.1125 21 1 0.1272 -4.1564 -4.2191 22 1 -1.0391 -2.0993 -4.7578 23 1 -0.0227 -3.4153 -6.5230 24 6 5.4281 -3.6910 -3.3293 25 6 6.2878 -2.4657 -3.6465 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6063 1.3681 2.1347 32 1 0.8169 2.7237 1.2692 33 1 3.0510 3.2106 2.6976 34 1 2.8885 3.9465 1.0706 35 1 4.4043 1.4003 1.8665 36 1 4.9838 2.7716 0.8697 37 1 4.1684 0.0160 -2.2582 38 1 4.1853 -2.5396 -1.0021 39 1 5.8468 -1.9115 -1.1165 40 1 3.9561 -0.9120 -4.3269 41 1 1.2289 -0.6063 -6.2290 42 1 4.9777 -4.2208 -4.1687 43 1 5.7306 -4.3142 -2.4877 44 1 7.1563 -2.2831 -3.0137 45 1 6.4034 -2.1898 -4.6947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754523969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:43 Heat of formation + Delta-G solvation = -24.540167 kcal Electronic energy + Delta-G solvation = -23258.022384 eV Core-core repulsion = 20082.435606 eV Total energy + Delta-G solvation = -3175.586778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14279 -37.90292 -36.85101 -33.61445 -33.05854 -32.87174 -29.71852 -29.47735 -27.44464 -26.18770 -23.94646 -22.62189 -21.86425 -21.21501 -20.43187 -19.33025 -18.50698 -17.06508 -16.52359 -16.20242 -15.50643 -15.00756 -14.65010 -14.38142 -14.17149 -13.80977 -13.63529 -13.26349 -13.05302 -13.01765 -12.68324 -12.12659 -11.87347 -11.78480 -11.38207 -11.06913 -11.02152 -10.94960 -10.91155 -10.88414 -10.68194 -10.53569 -10.34765 -10.26501 -10.22324 -10.15308 -9.77273 -9.34702 -9.10922 -8.99960 -8.38697 -7.15585 -5.87436 -3.18253 3.10013 3.37178 3.44582 3.45661 3.69228 4.41397 4.55171 4.59703 4.70030 4.84934 5.22657 5.28810 5.29962 5.37891 5.42701 5.50399 5.55051 5.56454 5.63533 5.68621 5.70669 5.79157 5.87996 5.90566 5.94099 5.98871 6.15621 6.16677 6.17650 6.23406 6.34977 6.40054 6.42757 6.43542 6.45779 6.60302 6.67264 6.70641 6.80296 7.03082 7.68011 8.10360 8.30502 8.73898 9.41934 9.94625 10.30229 11.34372 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.006295 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.870687 B = 4446.676963 C = 5765.761057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C -0.073 4.073 4 H 0.079 0.921 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.111 4.111 8 C -0.110 4.110 9 H 0.087 0.913 10 C 0.524 3.476 11 O -0.558 6.558 12 N -0.705 5.705 13 C 0.148 3.852 14 C 0.120 3.880 15 N -0.689 5.689 16 C -0.233 4.233 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.931 5.931 20 Si 0.904 3.096 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.172 4.172 25 C -0.190 4.190 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.405 0.595 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.387 0.613 41 H 0.255 0.745 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 6.010 10.458 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.092 4.092 4 H 0.097 0.903 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.149 4.149 8 C -0.132 4.132 9 H 0.105 0.895 10 C 0.310 3.690 11 O -0.438 6.438 12 N -0.355 5.355 13 C 0.021 3.979 14 C 0.027 3.973 15 N -0.329 5.329 16 C -0.364 4.364 17 H 0.089 0.911 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.735 3.265 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.211 4.211 25 C -0.229 4.229 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.241 0.759 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.222 0.778 41 H 0.065 0.935 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.615 5.416 11.112 12.879 hybrid contribution -0.999 -0.080 -0.971 1.395 sum 2.616 5.336 10.141 11.754 Atomic orbital electron populations 1.21718 0.95954 1.01520 1.01154 1.21840 0.96061 0.95545 1.03415 1.21696 0.92207 0.97200 0.98126 0.90292 1.22462 0.97547 0.98411 0.96969 1.22472 0.94966 0.98013 1.00604 1.22342 0.97467 0.98673 0.96439 1.22003 0.96941 0.93813 1.00436 0.89500 1.20320 0.76716 0.88649 0.83311 1.90620 1.53591 1.63744 1.35829 1.45908 1.65534 1.15744 1.08337 1.21161 0.97633 0.83006 0.96095 1.20246 0.89337 0.97717 0.90040 1.41686 1.12839 1.24519 1.53882 1.19208 0.92920 1.06114 1.18167 0.91052 1.24722 0.98864 0.97980 0.98857 1.69654 1.35119 1.23584 1.29521 0.86168 0.83710 0.79214 0.77441 1.20496 1.21814 1.21861 1.23078 1.03602 0.91280 1.03100 1.23328 0.94238 1.03640 1.01681 0.92746 0.92936 0.93287 0.90443 0.91374 0.91335 0.91781 0.91659 0.91625 0.89802 0.91769 0.75851 0.91777 0.92664 0.77837 0.93493 0.88337 0.89833 0.89757 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.77 37.16 0.36 -1.77 16 2 C -0.13 -2.11 4.13 -26.73 -0.11 -2.22 16 3 C -0.07 -1.01 2.93 -89.44 -0.26 -1.27 16 4 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.12 -1.36 5.58 -25.01 -0.14 -1.50 16 6 C -0.12 -1.30 6.91 -24.74 -0.17 -1.47 16 7 C -0.11 -1.38 6.32 -25.07 -0.16 -1.54 16 8 C -0.11 -1.54 3.29 -90.66 -0.30 -1.84 16 9 H 0.09 1.11 8.13 -51.93 -0.42 0.69 16 10 C 0.52 8.92 4.65 -10.99 -0.05 8.86 16 11 O -0.56 -10.99 14.95 5.55 0.08 -10.91 16 12 N -0.70 -12.22 4.97 -60.29 -0.30 -12.52 16 13 C 0.15 2.65 5.90 -4.04 -0.02 2.63 16 14 C 0.12 2.27 2.53 -131.82 -0.33 1.93 16 15 N -0.69 -15.71 4.53 -47.23 -0.21 -15.92 16 16 C -0.23 -6.05 9.71 -15.06 -0.15 -6.20 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 20 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C -0.17 -2.99 9.85 -26.73 -0.26 -3.25 16 25 C -0.19 -3.12 10.10 -26.73 -0.27 -3.39 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 29 H 0.08 1.48 6.86 -51.93 -0.36 1.12 16 30 H 0.07 1.17 7.04 -51.93 -0.37 0.81 16 31 H 0.07 0.85 7.75 -51.92 -0.40 0.44 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.19 6.93 -51.93 -0.36 0.83 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.41 7.08 7.63 -40.82 -0.31 6.77 16 38 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 40 H 0.39 9.33 7.87 -40.82 -0.32 9.01 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 45 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -28.57 356.96 -9.26 -37.83 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -7.95 Total: 16.37 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.96 Total: -11.34 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.21 Total: -54.09 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.57 -9.26 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754523969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.290 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds