Wall clock time and date at job start Tue Mar 31 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47037 * 2 1 4 4 H 1.09001 * 110.05822 * 307.19831 * 3 2 1 5 5 C 1.54376 * 110.04290 * 68.66619 * 3 2 1 6 6 C 1.54889 * 104.19647 * 142.91006 * 5 3 2 7 7 C 1.54892 * 102.75123 * 322.03045 * 6 5 3 8 8 C 1.53872 * 110.03476 * 185.77482 * 3 2 1 9 9 H 1.08996 * 110.02886 * 121.38260 * 8 3 2 10 10 C 1.50696 * 110.03082 * 0.02562 * 8 3 2 11 11 O 1.21289 * 120.00155 * 275.98374 * 10 8 3 12 12 N 1.34773 * 120.00349 * 95.98351 * 10 8 3 13 13 C 1.46503 * 120.00241 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47164 * 174.74982 * 13 12 10 15 15 N 1.46496 * 115.56228 * 325.13844 * 14 13 12 16 16 C 1.36936 * 119.99724 * 270.13987 * 15 14 13 17 17 H 1.08007 * 120.00293 * 5.18221 * 16 15 14 18 18 C 1.38817 * 120.00262 * 185.18336 * 16 15 14 19 19 N 1.31620 * 119.99633 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00177 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46829 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46869 * 119.99536 * 20 18 16 23 23 H 1.48503 * 109.47037 * 239.99624 * 20 18 16 24 24 C 1.53001 * 117.49699 * 179.44226 * 14 13 12 25 25 C 1.52999 * 117.49406 * 110.81895 * 14 13 12 26 26 H 1.08995 * 109.47414 * 60.00116 * 1 2 3 27 27 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47387 * 299.99283 * 1 2 3 29 29 H 1.09000 * 109.46972 * 240.00377 * 2 1 3 30 30 H 1.08995 * 109.47414 * 119.99884 * 2 1 3 31 31 H 1.09007 * 110.50948 * 24.22277 * 5 3 2 32 32 H 1.08996 * 110.46823 * 261.57655 * 5 3 2 33 33 H 1.09000 * 110.75694 * 203.71639 * 6 5 3 34 34 H 1.09004 * 110.91722 * 80.41586 * 6 5 3 35 35 H 1.09000 * 110.48928 * 279.26646 * 7 6 5 36 36 H 1.08993 * 110.49084 * 156.61618 * 7 6 5 37 37 H 0.97000 * 120.00207 * 359.97438 * 12 10 8 38 38 H 1.09006 * 109.46601 * 54.75847 * 13 12 10 39 39 H 1.08990 * 109.47286 * 294.75545 * 13 12 10 40 40 H 0.97002 * 120.00578 * 90.14386 * 15 14 13 41 41 H 0.97001 * 120.00058 * 180.02562 * 19 18 16 42 42 H 1.09005 * 117.49533 * 145.02853 * 24 14 13 43 43 H 1.08998 * 117.50084 * 0.02562 * 24 14 13 44 44 H 1.08999 * 117.50391 * 0.02562 * 25 14 13 45 45 H 1.08997 * 117.51827 * 214.97045 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5810 2.0013 -0.8156 5 6 1.7189 2.1172 1.3509 6 6 2.9510 3.0132 1.6303 7 6 4.1279 2.1450 1.1201 8 6 3.5717 1.4601 -0.1455 9 1 3.8560 2.0267 -1.0322 10 6 4.0971 0.0511 -0.2437 11 8 4.3055 -0.5901 0.7645 12 7 4.3354 -0.4966 -1.4518 13 6 4.8467 -1.8662 -1.5473 14 6 4.9048 -2.2876 -3.0170 15 7 3.8368 -1.7587 -3.8689 16 6 2.6701 -2.4597 -4.0188 17 1 2.5030 -3.3593 -3.4449 18 6 1.7021 -2.0143 -4.9085 19 7 1.9055 -0.9178 -5.6076 20 14 0.1102 -2.9703 -5.1125 21 1 0.1272 -4.1564 -4.2191 22 1 -1.0391 -2.0993 -4.7578 23 1 -0.0227 -3.4153 -6.5230 24 6 5.4281 -3.6910 -3.3293 25 6 6.2878 -2.4657 -3.6465 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6063 1.3681 2.1347 32 1 0.8169 2.7237 1.2692 33 1 3.0510 3.2106 2.6976 34 1 2.8885 3.9465 1.0706 35 1 4.4043 1.4003 1.8665 36 1 4.9838 2.7716 0.8697 37 1 4.1684 0.0160 -2.2582 38 1 4.1853 -2.5396 -1.0021 39 1 5.8468 -1.9115 -1.1165 40 1 3.9561 -0.9120 -4.3269 41 1 1.2289 -0.6063 -6.2290 42 1 4.9777 -4.2208 -4.1687 43 1 5.7306 -4.3142 -2.4877 44 1 7.1563 -2.2831 -3.0137 45 1 6.4034 -2.1898 -4.6947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754523969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:42 Heat of formation + Delta-G solvation = -40.763371 kcal Electronic energy + Delta-G solvation = -23258.725874 eV Core-core repulsion = 20082.435606 eV Total energy + Delta-G solvation = -3176.290269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42198 -39.32045 -38.15686 -35.14386 -34.88612 -34.03883 -31.59620 -30.62434 -28.50803 -27.56917 -25.92331 -23.80798 -23.26380 -22.44558 -21.44614 -20.83381 -19.87113 -19.04615 -17.81901 -17.57371 -16.77950 -16.43616 -16.06369 -15.93111 -15.43990 -15.21606 -15.10536 -15.00215 -14.33886 -14.24521 -14.00128 -13.57321 -13.33921 -12.97535 -12.95351 -12.80465 -12.44698 -12.25119 -12.22105 -12.18007 -11.96480 -11.86754 -11.77081 -11.63172 -11.47762 -11.45360 -11.34792 -10.95685 -10.73523 -10.53321 -9.83937 -9.08751 -7.95084 -5.23575 1.43331 1.46022 1.53393 1.74590 2.33664 2.54048 3.04411 3.38040 3.54203 3.62787 3.67124 3.74100 3.91033 4.12985 4.18825 4.22575 4.37600 4.39961 4.41357 4.53886 4.60368 4.67910 4.75831 4.78006 4.82125 4.84011 4.86891 4.87861 5.02676 5.05350 5.13714 5.16221 5.20616 5.22520 5.27411 5.37382 5.40273 5.43345 5.53728 5.56214 5.63620 6.27681 6.70500 7.34416 7.35494 8.05577 8.30992 9.27006 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.006295 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.870687 B = 4446.676963 C = 5765.761057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C -0.073 4.073 4 H 0.084 0.916 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.109 4.109 8 C -0.111 4.111 9 H 0.101 0.899 10 C 0.522 3.478 11 O -0.588 6.588 12 N -0.706 5.706 13 C 0.157 3.843 14 C 0.095 3.905 15 N -0.693 5.693 16 C -0.222 4.222 17 H 0.064 0.936 18 C -0.060 4.060 19 N -0.959 5.959 20 Si 0.955 3.045 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.294 1.294 24 C -0.171 4.171 25 C -0.163 4.163 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.405 0.595 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.378 0.622 41 H 0.250 0.750 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 7.061 11.457 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.092 4.092 4 H 0.102 0.898 5 C -0.151 4.151 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.132 4.132 9 H 0.119 0.881 10 C 0.310 3.690 11 O -0.469 6.469 12 N -0.355 5.355 13 C 0.030 3.970 14 C 0.003 3.997 15 N -0.333 5.333 16 C -0.354 4.354 17 H 0.082 0.918 18 C -0.253 4.253 19 N -0.610 5.610 20 Si 0.785 3.215 21 H -0.199 1.199 22 H -0.222 1.222 23 H -0.222 1.222 24 C -0.209 4.209 25 C -0.201 4.201 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.241 0.759 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.212 0.788 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.173 6.445 12.133 14.358 hybrid contribution -1.095 -0.474 -1.240 1.721 sum 3.077 5.970 10.893 12.797 Atomic orbital electron populations 1.21697 0.94780 1.01326 1.02204 1.21719 0.97102 0.96775 1.00645 1.21733 0.91954 0.95680 0.99861 0.89811 1.22449 0.99095 0.98485 0.95048 1.22469 0.92988 0.97923 1.01793 1.22340 0.98943 0.98528 0.94901 1.22118 0.97093 0.91909 1.02115 0.88094 1.20881 0.75853 0.89712 0.82555 1.90600 1.54855 1.64836 1.36656 1.45953 1.65534 1.15502 1.08555 1.21020 0.97919 0.82939 0.95091 1.20454 0.90005 0.99315 0.89929 1.41659 1.13188 1.24128 1.54318 1.19349 0.93847 1.05394 1.16781 0.91771 1.25284 1.01409 0.99072 0.99576 1.69763 1.35733 1.24942 1.30532 0.85348 0.80854 0.78231 0.77021 1.19934 1.22188 1.22163 1.23120 1.03484 0.91070 1.03272 1.23344 0.93567 1.01531 1.01653 0.93000 0.93825 0.90808 0.94141 0.93090 0.92246 0.89901 0.90179 0.89812 0.91954 0.90023 0.75931 0.94193 0.90917 0.78788 0.94074 0.90263 0.87357 0.86600 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.77 71.98 0.70 -3.42 16 2 C -0.12 -4.06 4.13 30.59 0.13 -3.94 16 3 C -0.07 -1.95 2.93 -10.03 -0.03 -1.98 16 4 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 5 C -0.11 -2.40 5.58 31.71 0.18 -2.22 16 6 C -0.11 -2.07 6.91 31.89 0.22 -1.85 16 7 C -0.11 -2.50 6.32 31.67 0.20 -2.30 16 8 C -0.11 -2.99 3.29 -10.82 -0.04 -3.03 16 9 H 0.10 2.42 8.13 -2.39 -0.02 2.41 16 10 C 0.52 17.82 4.65 87.66 0.41 18.22 16 11 O -0.59 -23.45 14.95 -3.06 -0.05 -23.49 16 12 N -0.71 -24.61 4.97 -463.05 -2.30 -26.91 16 13 C 0.16 5.60 5.90 86.38 0.51 6.11 16 14 C 0.10 3.53 2.53 3.61 0.01 3.54 16 15 N -0.69 -31.94 4.53 -303.34 -1.37 -33.31 16 16 C -0.22 -11.66 9.71 84.03 0.82 -10.85 16 17 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 18 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 19 N -0.96 -55.17 13.06 21.65 0.28 -54.88 16 20 Si 0.95 45.35 29.55 68.60 2.03 47.37 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 24 C -0.17 -5.72 9.85 30.60 0.30 -5.42 16 25 C -0.16 -4.99 10.10 30.60 0.31 -4.68 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.07 1.74 7.54 -2.39 -0.02 1.72 16 29 H 0.04 1.60 6.86 -2.39 -0.02 1.58 16 30 H 0.05 1.81 7.04 -2.39 -0.02 1.79 16 31 H 0.06 1.37 7.75 -2.38 -0.02 1.35 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.06 1.71 6.93 -2.39 -0.02 1.70 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.40 14.27 7.63 -92.71 -0.71 13.57 16 38 H 0.04 1.60 8.13 -2.38 -0.02 1.58 16 39 H 0.07 2.33 7.90 -2.39 -0.02 2.31 16 40 H 0.38 18.53 7.87 -92.71 -0.73 17.80 16 41 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 43 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.12 2.87 8.05 -2.39 -0.02 2.85 16 45 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -62.19 356.96 2.30 -59.88 By element: Atomic # 1 Polarization: 46.44 SS G_CDS: -0.47 Total: 45.97 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.18 Total: -14.63 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -3.39 Total: -115.11 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -62.19 2.30 -59.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754523969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.119 kcal (2) G-P(sol) polarization free energy of solvation -62.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds