Wall clock time and date at job start Tue Mar 31 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 H 1.09000 * 110.02145 * 54.93351 * 3 2 1 5 5 C 1.53877 * 110.02991 * 293.54692 * 3 2 1 6 6 C 1.54275 * 106.60001 * 240.71615 * 5 3 2 7 7 C 1.54889 * 104.31001 * 336.32118 * 6 5 3 8 8 C 1.54265 * 110.03533 * 176.38008 * 3 2 1 9 9 H 1.09000 * 110.48302 * 24.08443 * 8 3 2 10 10 C 1.50691 * 110.48769 * 261.57258 * 8 3 2 11 11 O 1.21283 * 120.00021 * 359.97438 * 10 8 3 12 12 N 1.34781 * 119.99987 * 180.02562 * 10 8 3 13 13 C 1.46508 * 119.99843 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46877 * 181.50180 * 13 12 10 15 15 N 1.46500 * 115.55325 * 275.47492 * 14 13 12 16 16 C 1.36939 * 119.99861 * 294.73049 * 15 14 13 17 17 H 1.07994 * 119.99735 * 5.38909 * 16 15 14 18 18 C 1.38809 * 119.99816 * 185.38799 * 16 15 14 19 19 N 1.31622 * 119.99787 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00157 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47108 * 90.00248 * 20 18 16 22 22 H 1.48500 * 109.47178 * 209.99994 * 20 18 16 23 23 H 1.48502 * 109.47502 * 330.00066 * 20 18 16 24 24 C 1.53006 * 117.49775 * 129.80527 * 14 13 12 25 25 C 1.53003 * 117.49880 * 61.14372 * 14 13 12 26 26 H 1.08999 * 109.47054 * 299.99665 * 1 2 3 27 27 H 1.08996 * 109.47582 * 60.00081 * 1 2 3 28 28 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47387 * 239.99970 * 2 1 3 30 30 H 1.09006 * 109.47658 * 119.99813 * 2 1 3 31 31 H 1.09000 * 110.03514 * 121.43371 * 5 3 2 32 32 H 1.08995 * 110.03432 * 359.97438 * 5 3 2 33 33 H 1.08995 * 110.48669 * 95.06635 * 6 5 3 34 34 H 1.08993 * 110.48293 * 217.58154 * 6 5 3 35 35 H 1.08998 * 110.75384 * 156.31878 * 7 6 5 36 36 H 1.09001 * 110.75994 * 279.69835 * 7 6 5 37 37 H 0.97001 * 120.00045 * 359.97438 * 12 10 8 38 38 H 1.09001 * 109.46676 * 301.49980 * 13 12 10 39 39 H 1.08997 * 109.47373 * 61.50118 * 13 12 10 40 40 H 0.97001 * 120.00046 * 114.72472 * 15 14 13 41 41 H 0.96997 * 120.00055 * 179.97438 * 19 18 16 42 42 H 1.08994 * 117.49883 * 359.97438 * 24 14 13 43 43 H 1.08995 * 117.49877 * 145.02217 * 24 14 13 44 44 H 1.09003 * 117.49917 * 214.97389 * 25 14 13 45 45 H 1.08997 * 117.49803 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6096 1.9905 0.8382 5 6 1.6711 2.1319 -1.3253 6 6 2.9997 2.5430 -1.9930 7 6 4.0037 2.6433 -0.8179 8 6 3.5798 1.4587 0.0915 9 1 3.9939 0.5220 -0.2816 10 6 4.0212 1.7004 1.5119 11 8 3.1946 1.8494 2.3868 12 7 5.3346 1.7522 1.8098 13 6 5.7638 1.9866 3.1909 14 6 7.2919 2.0362 3.2486 15 7 7.9626 0.7383 3.3578 16 6 7.7926 -0.0279 4.4800 17 1 7.0972 0.2827 5.2456 18 6 8.5141 -1.2038 4.6333 19 7 8.3510 -1.9400 5.7121 20 14 9.7163 -1.7414 3.3085 21 1 11.0575 -1.1731 3.5971 22 1 9.8007 -3.2239 3.2888 23 1 9.2464 -1.2547 1.9865 24 6 7.9336 3.2256 3.9661 25 6 7.9944 3.1284 2.4395 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.0625 3.0149 -1.1302 32 1 1.1292 1.4387 -1.9686 33 1 3.3203 1.7823 -2.7048 34 1 2.8949 3.5080 -2.4887 35 1 5.0266 2.5150 -1.1718 36 1 3.8913 3.5923 -0.2936 37 1 5.9958 1.6334 1.1100 38 1 5.3560 2.9345 3.5420 39 1 5.4023 1.1780 3.8260 40 1 8.5270 0.4217 2.6353 41 1 8.8549 -2.7619 5.8191 42 1 7.2671 3.9728 4.3966 43 1 8.8548 3.0424 4.5190 44 1 8.9557 2.8815 1.9890 45 1 7.3679 3.8114 1.8658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754523971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:50 Heat of formation + Delta-G solvation = -24.522508 kcal Electronic energy + Delta-G solvation = -22511.535364 eV Core-core repulsion = 19335.949352 eV Total energy + Delta-G solvation = -3175.586012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.11398 -38.17626 -37.17239 -33.89370 -33.16640 -32.95875 -30.37483 -29.68695 -27.64542 -26.36441 -23.62567 -23.06599 -22.10740 -21.50501 -19.96220 -19.50143 -18.94029 -17.68898 -17.23485 -15.86426 -15.58996 -15.40889 -14.71550 -14.59658 -14.21559 -14.13628 -13.71302 -13.31878 -13.24263 -13.10588 -12.76436 -12.40467 -12.19053 -11.94654 -11.83398 -11.38505 -11.26124 -11.25129 -11.08473 -10.99905 -10.88448 -10.69694 -10.50823 -10.48283 -10.40755 -10.19753 -9.65947 -9.62699 -9.36510 -8.89097 -8.62943 -7.38057 -5.82929 -3.21339 2.93364 3.29915 3.33461 3.39739 3.44922 4.33314 4.36220 4.46497 4.51706 4.64045 4.96904 5.02234 5.09316 5.12324 5.19267 5.22221 5.31049 5.37241 5.43673 5.49509 5.52170 5.55606 5.59368 5.69558 5.72022 5.76069 5.84527 5.95438 5.95992 6.03505 6.09088 6.14290 6.19135 6.29693 6.30832 6.37648 6.44132 6.62205 6.67971 6.83660 7.86127 7.93800 8.35684 8.54989 9.12454 9.83846 10.01900 11.34850 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.004294 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.703859 B = 6519.516134 C = 7074.283263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.079 4.079 4 H 0.092 0.908 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.099 0.901 10 C 0.515 3.485 11 O -0.546 6.546 12 N -0.714 5.714 13 C 0.146 3.854 14 C 0.133 3.867 15 N -0.715 5.715 16 C -0.244 4.244 17 H 0.093 0.907 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.279 1.279 24 C -0.180 4.180 25 C -0.189 4.189 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.365 0.635 41 H 0.261 0.739 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 9.791 -16.792 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.098 4.098 4 H 0.110 0.890 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.151 4.151 8 C -0.133 4.133 9 H 0.117 0.883 10 C 0.301 3.699 11 O -0.424 6.424 12 N -0.364 5.364 13 C 0.021 3.979 14 C 0.040 3.960 15 N -0.356 5.356 16 C -0.374 4.374 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.576 5.576 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.221 4.221 25 C -0.227 4.227 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.231 0.769 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.199 0.801 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.416 9.751 -15.894 21.358 hybrid contribution 1.384 -0.693 -1.119 1.910 sum -9.032 9.057 -17.012 21.285 Atomic orbital electron populations 1.21779 0.95901 1.01349 1.01754 1.21596 0.95931 0.95988 1.01917 1.21710 0.92689 0.96842 0.98523 0.89010 1.22261 0.97272 1.00115 0.96155 1.22341 0.95139 1.01279 0.97277 1.22523 0.99297 0.97534 0.95714 1.22304 0.97670 1.00636 0.92726 0.88296 1.20451 0.82431 0.76436 0.90551 1.90665 1.52201 1.50084 1.49406 1.45966 1.06749 1.72635 1.11044 1.21245 0.93030 1.01327 0.82287 1.20074 0.89624 0.83446 1.02877 1.42147 1.56861 1.16413 1.20188 1.18991 1.20373 1.01627 0.96360 0.88954 1.24668 0.99472 0.97540 0.97022 1.69696 1.44828 1.15902 1.27159 0.86563 0.82071 0.77959 0.81910 1.21050 1.21678 1.20512 1.23362 1.03732 1.01565 0.93434 1.23127 1.02143 1.02394 0.95028 0.92609 0.92844 0.92999 0.92253 0.91702 0.91890 0.91503 0.91502 0.91619 0.90905 0.91006 0.76883 0.92093 0.90064 0.80095 0.92930 0.89569 0.88408 0.89166 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.73 37.15 0.36 -1.09 16 2 C -0.12 -1.28 5.08 -26.73 -0.14 -1.41 16 3 C -0.08 -0.89 2.33 -89.50 -0.21 -1.10 16 4 H 0.09 1.26 6.85 -51.93 -0.36 0.90 16 5 C -0.12 -1.06 5.95 -25.61 -0.15 -1.22 16 6 C -0.12 -0.98 6.82 -25.07 -0.17 -1.15 16 7 C -0.11 -1.05 6.34 -24.55 -0.16 -1.20 16 8 C -0.11 -1.30 2.79 -89.92 -0.25 -1.55 16 9 H 0.10 1.08 7.85 -51.93 -0.41 0.68 16 10 C 0.52 8.04 7.13 -10.99 -0.08 7.97 16 11 O -0.55 -10.58 15.42 5.56 0.09 -10.50 16 12 N -0.71 -10.94 5.46 -60.29 -0.33 -11.26 16 13 C 0.15 2.64 5.77 -4.04 -0.02 2.61 16 14 C 0.13 2.43 2.19 -131.81 -0.29 2.15 16 15 N -0.71 -16.09 5.29 -47.23 -0.25 -16.34 16 16 C -0.24 -6.69 10.01 -15.06 -0.15 -6.84 16 17 H 0.09 2.76 8.02 -52.49 -0.42 2.34 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 19 N -0.93 -28.82 13.97 55.49 0.78 -28.05 16 20 Si 0.88 21.54 27.79 -169.99 -4.72 16.81 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.30 6.45 56.52 0.36 -5.93 16 24 C -0.18 -2.99 10.11 -26.69 -0.27 -3.26 16 25 C -0.19 -2.75 9.95 -26.69 -0.27 -3.02 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 6.90 -51.93 -0.36 0.09 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.54 6.78 -51.93 -0.35 0.18 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.71 8.06 -51.93 -0.42 0.30 16 37 H 0.40 5.29 8.35 -40.82 -0.34 4.95 16 38 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16 39 H 0.08 1.77 7.71 -51.93 -0.40 1.37 16 40 H 0.36 8.04 5.87 -40.82 -0.24 7.80 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 42 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 43 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -31.75 358.51 -8.87 -40.62 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -7.95 Total: 12.26 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.88 Total: -8.95 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.20 Total: -55.66 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.72 Total: 16.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.75 -8.87 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754523971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.101 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds