Wall clock time and date at job start Tue Mar 31 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 H 1.09000 * 110.02145 * 54.93351 * 3 2 1 5 5 C 1.53877 * 110.02991 * 293.54692 * 3 2 1 6 6 C 1.54275 * 106.60001 * 240.71615 * 5 3 2 7 7 C 1.54889 * 104.31001 * 336.32118 * 6 5 3 8 8 C 1.54265 * 110.03533 * 176.38008 * 3 2 1 9 9 H 1.09000 * 110.48302 * 24.08443 * 8 3 2 10 10 C 1.50691 * 110.48769 * 261.57258 * 8 3 2 11 11 O 1.21283 * 120.00021 * 359.97438 * 10 8 3 12 12 N 1.34781 * 119.99987 * 180.02562 * 10 8 3 13 13 C 1.46508 * 119.99843 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46877 * 181.50180 * 13 12 10 15 15 N 1.46500 * 115.55325 * 275.47492 * 14 13 12 16 16 C 1.36939 * 119.99861 * 294.73049 * 15 14 13 17 17 H 1.07994 * 119.99735 * 5.38909 * 16 15 14 18 18 C 1.38809 * 119.99816 * 185.38799 * 16 15 14 19 19 N 1.31622 * 119.99787 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00157 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47108 * 90.00248 * 20 18 16 22 22 H 1.48500 * 109.47178 * 209.99994 * 20 18 16 23 23 H 1.48502 * 109.47502 * 330.00066 * 20 18 16 24 24 C 1.53006 * 117.49775 * 129.80527 * 14 13 12 25 25 C 1.53003 * 117.49880 * 61.14372 * 14 13 12 26 26 H 1.08999 * 109.47054 * 299.99665 * 1 2 3 27 27 H 1.08996 * 109.47582 * 60.00081 * 1 2 3 28 28 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47387 * 239.99970 * 2 1 3 30 30 H 1.09006 * 109.47658 * 119.99813 * 2 1 3 31 31 H 1.09000 * 110.03514 * 121.43371 * 5 3 2 32 32 H 1.08995 * 110.03432 * 359.97438 * 5 3 2 33 33 H 1.08995 * 110.48669 * 95.06635 * 6 5 3 34 34 H 1.08993 * 110.48293 * 217.58154 * 6 5 3 35 35 H 1.08998 * 110.75384 * 156.31878 * 7 6 5 36 36 H 1.09001 * 110.75994 * 279.69835 * 7 6 5 37 37 H 0.97001 * 120.00045 * 359.97438 * 12 10 8 38 38 H 1.09001 * 109.46676 * 301.49980 * 13 12 10 39 39 H 1.08997 * 109.47373 * 61.50118 * 13 12 10 40 40 H 0.97001 * 120.00046 * 114.72472 * 15 14 13 41 41 H 0.96997 * 120.00055 * 179.97438 * 19 18 16 42 42 H 1.08994 * 117.49883 * 359.97438 * 24 14 13 43 43 H 1.08995 * 117.49877 * 145.02217 * 24 14 13 44 44 H 1.09003 * 117.49917 * 214.97389 * 25 14 13 45 45 H 1.08997 * 117.49803 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6096 1.9905 0.8382 5 6 1.6711 2.1319 -1.3253 6 6 2.9997 2.5430 -1.9930 7 6 4.0037 2.6433 -0.8179 8 6 3.5798 1.4587 0.0915 9 1 3.9939 0.5220 -0.2816 10 6 4.0212 1.7004 1.5119 11 8 3.1946 1.8494 2.3868 12 7 5.3346 1.7522 1.8098 13 6 5.7638 1.9866 3.1909 14 6 7.2919 2.0362 3.2486 15 7 7.9626 0.7383 3.3578 16 6 7.7926 -0.0279 4.4800 17 1 7.0972 0.2827 5.2456 18 6 8.5141 -1.2038 4.6333 19 7 8.3510 -1.9400 5.7121 20 14 9.7163 -1.7414 3.3085 21 1 11.0575 -1.1731 3.5971 22 1 9.8007 -3.2239 3.2888 23 1 9.2464 -1.2547 1.9865 24 6 7.9336 3.2256 3.9661 25 6 7.9944 3.1284 2.4395 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.0625 3.0149 -1.1302 32 1 1.1292 1.4387 -1.9686 33 1 3.3203 1.7823 -2.7048 34 1 2.8949 3.5080 -2.4887 35 1 5.0266 2.5150 -1.1718 36 1 3.8913 3.5923 -0.2936 37 1 5.9958 1.6334 1.1100 38 1 5.3560 2.9345 3.5420 39 1 5.4023 1.1780 3.8260 40 1 8.5270 0.4217 2.6353 41 1 8.8549 -2.7619 5.8191 42 1 7.2671 3.9728 4.3966 43 1 8.8548 3.0424 4.5190 44 1 8.9557 2.8815 1.9890 45 1 7.3679 3.8114 1.8658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754523971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:50 Heat of formation + Delta-G solvation = -45.435369 kcal Electronic energy + Delta-G solvation = -22512.442214 eV Core-core repulsion = 19335.949352 eV Total energy + Delta-G solvation = -3176.492862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26425 -39.44757 -38.37065 -35.39149 -34.84687 -33.94091 -32.37717 -30.62511 -28.42482 -27.66296 -25.66346 -23.99420 -23.31383 -22.46905 -21.08079 -20.71022 -20.10880 -19.74222 -18.41625 -17.19813 -16.81992 -16.45959 -16.24670 -15.92378 -15.69635 -15.19656 -14.83307 -14.76019 -14.38835 -14.16819 -14.08609 -13.85952 -13.59541 -13.09539 -12.92515 -12.85297 -12.71176 -12.29785 -12.21913 -12.17588 -11.89892 -11.87690 -11.74136 -11.64488 -11.52064 -11.33198 -11.22627 -11.04267 -10.95113 -10.53728 -10.03201 -9.34153 -8.03414 -5.39624 1.35304 1.41190 1.47802 1.68707 2.21094 2.46909 2.99806 3.27453 3.39525 3.52065 3.66116 3.76311 3.79007 4.12963 4.16739 4.24759 4.28861 4.32429 4.46131 4.51369 4.60644 4.71089 4.75672 4.77730 4.81543 4.84037 4.84824 4.92584 5.02136 5.07117 5.15291 5.15618 5.20980 5.27707 5.31143 5.35505 5.42909 5.47875 5.51975 5.59996 5.78011 6.19901 6.64091 7.05812 7.31686 7.79516 7.99569 9.18258 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.004294 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.703859 B = 6519.516134 C = 7074.283263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.080 4.080 4 H 0.059 0.941 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.108 4.108 8 C -0.108 4.108 9 H 0.111 0.889 10 C 0.510 3.490 11 O -0.592 6.592 12 N -0.705 5.705 13 C 0.159 3.841 14 C 0.098 3.902 15 N -0.715 5.715 16 C -0.225 4.225 17 H 0.049 0.951 18 C -0.064 4.064 19 N -0.986 5.986 20 Si 0.960 3.040 21 H -0.278 1.278 22 H -0.300 1.300 23 H -0.245 1.245 24 C -0.187 4.187 25 C -0.142 4.142 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.371 0.629 41 H 0.257 0.743 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 11.338 -21.192 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.099 4.099 4 H 0.078 0.922 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.146 4.146 8 C -0.129 4.129 9 H 0.129 0.871 10 C 0.298 3.702 11 O -0.473 6.473 12 N -0.355 5.355 13 C 0.033 3.967 14 C 0.006 3.994 15 N -0.357 5.357 16 C -0.356 4.356 17 H 0.067 0.933 18 C -0.255 4.255 19 N -0.636 5.636 20 Si 0.787 3.213 21 H -0.204 1.204 22 H -0.227 1.227 23 H -0.170 1.170 24 C -0.227 4.227 25 C -0.179 4.179 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.247 0.753 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.206 0.794 41 H 0.066 0.934 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.122 0.878 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.497 11.360 -20.357 25.172 hybrid contribution 0.987 -1.097 0.356 1.518 sum -8.510 10.263 -20.000 24.037 Atomic orbital electron populations 1.21764 0.94979 1.01854 1.01955 1.21599 0.96839 0.95766 1.01222 1.21692 0.92407 0.96816 0.99031 0.92236 1.22233 0.98241 1.00162 0.94702 1.22343 0.93690 1.02580 0.96778 1.22557 1.00921 0.95673 0.95421 1.22381 0.97951 1.02448 0.90159 0.87082 1.21279 0.81895 0.75064 0.91962 1.90648 1.53369 1.52032 1.51233 1.45873 1.07182 1.72294 1.10162 1.20879 0.93085 0.99576 0.83136 1.20258 0.89318 0.82569 1.07207 1.41983 1.57347 1.17705 1.18683 1.18853 1.18222 1.01835 0.96705 0.93340 1.25547 1.02256 0.97868 0.99854 1.69906 1.46856 1.16680 1.30139 0.85340 0.79207 0.76677 0.80051 1.20420 1.22695 1.16955 1.23388 1.03038 1.00641 0.95631 1.23251 1.02227 0.98909 0.93547 0.94075 0.90956 0.92360 0.90396 0.94807 0.91818 0.90138 0.90081 0.90119 0.88836 0.91807 0.75256 0.91414 0.95274 0.79416 0.93374 0.87943 0.90008 0.87756 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.73 71.98 0.70 -2.06 16 2 C -0.12 -2.50 5.08 30.59 0.16 -2.34 16 3 C -0.08 -1.76 2.33 -10.07 -0.02 -1.78 16 4 H 0.06 1.70 6.85 -2.39 -0.02 1.68 16 5 C -0.12 -1.74 5.95 31.32 0.19 -1.55 16 6 C -0.12 -1.39 6.82 31.67 0.22 -1.18 16 7 C -0.11 -1.64 6.34 32.01 0.20 -1.44 16 8 C -0.11 -2.35 2.79 -10.34 -0.03 -2.38 16 9 H 0.11 2.17 7.85 -2.39 -0.02 2.15 16 10 C 0.51 15.93 7.13 87.65 0.62 16.55 16 11 O -0.59 -24.05 15.42 -3.04 -0.05 -24.10 16 12 N -0.70 -20.94 5.46 -463.05 -2.53 -23.47 16 13 C 0.16 5.82 5.77 86.38 0.50 6.32 16 14 C 0.10 3.48 2.19 3.61 0.01 3.49 16 15 N -0.71 -31.74 5.29 -303.34 -1.60 -33.35 16 16 C -0.23 -12.75 10.01 84.03 0.84 -11.91 16 17 H 0.05 3.11 8.02 -2.91 -0.02 3.09 16 18 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 19 N -0.99 -63.79 13.97 21.65 0.30 -63.49 16 20 Si 0.96 44.49 27.79 68.60 1.91 46.39 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.25 -9.87 6.45 99.48 0.64 -9.23 16 24 C -0.19 -5.88 10.11 30.62 0.31 -5.57 16 25 C -0.14 -3.55 9.95 30.62 0.30 -3.25 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.07 6.90 -2.39 -0.02 1.05 16 28 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.01 6.78 -2.39 -0.02 0.99 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.09 8.06 -2.39 -0.02 1.07 16 37 H 0.41 9.85 8.35 -92.71 -0.77 9.07 16 38 H 0.07 2.36 7.91 -2.39 -0.02 2.34 16 39 H 0.03 1.36 7.71 -2.39 -0.02 1.34 16 40 H 0.37 15.42 5.87 -92.71 -0.54 14.87 16 41 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.10 2.87 8.06 -2.39 -0.02 2.85 16 43 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -74.40 358.51 2.08 -72.33 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -0.42 Total: 36.07 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 4.46 Total: -10.38 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -3.83 Total: -120.30 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.91 Total: 46.39 kcal Total: -74.40 2.08 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754523971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.891 kcal (2) G-P(sol) polarization free energy of solvation -74.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds