Wall clock time and date at job start Tue Mar 31 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46995 * 2 1 4 4 C 1.50696 * 109.46973 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00434 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99885 * 179.97438 * 4 3 2 7 7 C 1.46506 * 120.00033 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.67181 * 35.00289 * 7 6 4 9 9 C 1.53328 * 109.68025 * 274.49701 * 7 6 4 10 10 C 1.52996 * 107.47019 * 175.19959 * 9 7 6 11 11 C 1.50741 * 111.26531 * 60.21530 * 10 9 7 12 12 H 1.09005 * 108.77693 * 185.58752 * 11 10 9 13 13 C 1.55500 * 113.78298 * 63.70061 * 11 10 9 14 14 N 1.47815 * 104.26031 * 198.80812 * 13 11 10 15 15 C 1.36930 * 125.65057 * 203.26546 * 14 13 11 16 16 H 1.07998 * 120.00327 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99892 * 0.04714 * 15 14 13 18 18 N 1.31622 * 119.99979 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47078 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47106 * 119.99433 * 19 17 15 22 22 H 1.48497 * 109.47311 * 239.99836 * 19 17 15 23 23 C 1.47176 * 108.70078 * 23.30173 * 14 13 11 24 24 C 1.53998 * 113.94462 * 307.67737 * 11 10 9 25 25 H 1.09006 * 112.20094 * 281.28640 * 24 11 10 26 26 C 1.52586 * 109.67431 * 155.50641 * 7 6 4 27 27 H 1.08993 * 109.47412 * 300.00059 * 1 2 3 28 28 H 1.08998 * 109.47225 * 60.00804 * 1 2 3 29 29 H 1.09007 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47247 * 239.99701 * 2 1 3 31 31 H 1.09007 * 109.47060 * 119.99795 * 2 1 3 32 32 H 1.09001 * 109.47368 * 59.99775 * 3 2 1 33 33 H 1.08997 * 109.46928 * 299.99938 * 3 2 1 34 34 H 0.97000 * 120.00155 * 0.02562 * 6 4 3 35 35 H 1.09004 * 109.73655 * 295.79092 * 9 7 6 36 36 H 1.08998 * 109.73893 * 56.49092 * 9 7 6 37 37 H 1.08997 * 110.07905 * 299.23179 * 10 9 7 38 38 H 1.09001 * 108.38359 * 180.08129 * 10 9 7 39 39 H 1.09002 * 110.45577 * 80.08283 * 13 11 10 40 40 H 1.08993 * 110.37643 * 317.50159 * 13 11 10 41 41 H 0.97000 * 120.00000 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.96183 * 241.57536 * 23 14 13 43 43 H 1.08998 * 109.99082 * 120.34852 * 23 14 13 44 44 H 1.08997 * 109.16874 * 302.48984 * 26 7 6 45 45 H 1.09005 * 109.16446 * 61.73406 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2208 2.6097 0.0002 7 6 5.6858 2.6098 0.0014 8 1 6.0533 1.7685 -0.5864 9 6 6.2010 2.4977 1.4412 10 6 7.7251 2.3805 1.3758 11 6 8.3386 3.5891 0.7163 12 1 9.4094 3.4203 0.6011 13 6 8.1126 4.9133 1.4994 14 7 8.3579 5.9740 0.4996 15 6 8.7190 7.2652 0.7780 16 1 8.8751 7.9679 -0.0271 17 6 8.8849 7.6708 2.0952 18 7 8.6947 6.8144 3.0764 19 14 9.3783 9.4320 2.4751 20 1 9.5299 10.1883 1.2061 21 1 8.3295 10.0706 3.3102 22 1 10.6682 9.4370 3.2108 23 6 8.1488 5.4128 -0.8448 24 6 7.7287 3.9292 -0.6563 25 1 8.1121 3.2857 -1.4482 26 6 6.2000 3.9168 -0.5949 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7358 3.4498 -0.0001 35 1 5.9042 3.3802 2.0081 36 1 5.7913 1.6032 1.9102 37 1 8.0081 1.4885 0.8170 38 1 8.1075 2.2984 2.3933 39 1 8.8214 4.9942 2.3236 40 1 7.0885 4.9658 1.8686 41 1 8.8103 7.0979 3.9968 42 1 9.0736 5.4677 -1.4190 43 1 7.3589 5.9607 -1.3586 44 1 5.8006 4.0320 -1.6025 45 1 5.8608 4.7493 0.0216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755449706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:34 Heat of formation + Delta-G solvation = -39.448413 kcal Electronic energy + Delta-G solvation = -22764.220287 eV Core-core repulsion = 19587.987039 eV Total energy + Delta-G solvation = -3176.233248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10510 -38.81901 -35.54561 -34.43644 -33.43763 -31.91041 -30.44739 -29.06290 -27.70861 -25.98730 -24.91357 -22.52045 -22.10896 -21.14898 -20.40839 -19.69022 -18.20419 -16.90723 -16.76356 -16.03336 -15.87445 -15.21374 -14.60963 -14.30764 -14.07663 -13.91821 -13.45471 -13.39637 -13.16697 -12.43485 -12.38141 -12.26180 -11.97999 -11.93209 -11.81695 -11.38059 -11.29269 -11.10820 -11.00935 -10.93447 -10.86361 -10.62120 -10.48783 -10.02419 -9.94906 -9.73548 -9.70323 -9.44749 -9.28716 -8.81471 -8.61357 -6.79634 -5.64515 -3.04882 2.70059 3.25223 3.39324 3.45054 3.47374 4.49875 4.65168 4.72413 4.80804 5.00974 5.08471 5.24986 5.28854 5.31507 5.42195 5.49132 5.50349 5.53410 5.64269 5.67470 5.77757 5.83048 5.86944 5.91835 5.95207 5.95483 6.09512 6.12623 6.33734 6.39930 6.48146 6.53102 6.57205 6.65954 6.73199 6.77776 6.91924 7.04524 7.57692 7.60303 7.65662 7.89483 8.30408 8.36837 9.23509 9.84564 10.50862 11.39824 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.003601 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.005517 B = 7774.087145 C = 8043.354817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.510 3.490 5 O -0.546 6.546 6 N -0.726 5.726 7 C 0.146 3.854 8 H 0.083 0.917 9 C -0.124 4.124 10 C -0.095 4.095 11 C -0.116 4.116 12 H 0.062 0.938 13 C 0.167 3.833 14 N -0.606 5.606 15 C -0.220 4.220 16 H 0.076 0.924 17 C -0.012 4.012 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.139 3.861 24 C -0.089 4.089 25 H 0.073 0.927 26 C -0.114 4.114 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.399 0.601 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.015 0.985 41 H 0.250 0.750 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.057 0.943 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 -10.496 -6.069 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.182 4.182 4 C 0.296 3.704 5 O -0.423 6.423 6 N -0.376 5.376 7 C 0.042 3.958 8 H 0.101 0.899 9 C -0.162 4.162 10 C -0.134 4.134 11 C -0.136 4.136 12 H 0.081 0.919 13 C 0.043 3.957 14 N -0.332 5.332 15 C -0.348 4.348 16 H 0.094 0.906 17 C -0.208 4.208 18 N -0.570 5.570 19 Si 0.743 3.257 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.012 3.988 24 C -0.108 4.108 25 H 0.091 0.909 26 C -0.152 4.152 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.033 0.967 41 H 0.061 0.939 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.076 0.924 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.936 -11.092 -5.910 17.333 hybrid contribution -0.005 1.486 0.203 1.500 sum -11.941 -9.605 -5.707 16.353 Atomic orbital electron populations 1.21798 0.95638 1.01845 1.01746 1.21267 0.95073 0.94843 1.03515 1.21734 0.92185 1.00046 1.04284 1.20723 0.90168 0.83775 0.75703 1.90688 1.70566 1.31353 1.49691 1.46219 1.07855 1.08473 1.75025 1.21044 0.78211 0.99194 0.97374 0.89866 1.21968 0.96277 1.01946 0.96045 1.20803 0.94325 0.97388 1.00872 1.22033 0.99007 0.97108 0.95431 0.91950 1.22045 0.99590 0.81757 0.92346 1.44599 1.80748 1.08041 0.99799 1.19118 1.38354 0.85379 0.91993 0.90571 1.24777 1.02318 0.98160 0.95528 1.69838 1.56097 1.32606 0.98480 0.86028 0.77803 0.83996 0.77861 1.20601 1.21833 1.21797 1.21599 0.96921 0.90956 0.89275 1.22043 0.93577 0.97337 0.97887 0.90882 1.21764 0.96385 0.96596 1.00427 0.92690 0.92744 0.92506 0.91335 0.91263 0.88988 0.89099 0.76748 0.90852 0.92397 0.92656 0.91903 0.88254 0.96687 0.93874 0.96294 0.95974 0.92418 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.11 -1.00 5.22 -26.73 -0.14 -1.14 16 3 C -0.14 -1.26 5.70 -27.88 -0.16 -1.42 16 4 C 0.51 6.52 7.80 -10.99 -0.09 6.43 16 5 O -0.55 -9.10 15.65 5.55 0.09 -9.02 16 6 N -0.73 -8.88 5.09 -53.84 -0.27 -9.15 16 7 C 0.15 2.11 2.40 -67.97 -0.16 1.95 16 8 H 0.08 1.31 7.58 -51.93 -0.39 0.91 16 9 C -0.12 -1.94 5.41 -26.56 -0.14 -2.09 16 10 C -0.10 -1.55 5.42 -27.87 -0.15 -1.70 16 11 C -0.12 -2.18 2.87 -89.90 -0.26 -2.43 16 12 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 13 C 0.17 3.95 4.86 -1.99 -0.01 3.94 16 14 N -0.61 -15.29 3.41 -168.62 -0.57 -15.86 16 15 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 18 N -0.92 -26.65 10.11 55.49 0.56 -26.09 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.14 2.86 6.55 -2.43 -0.02 2.84 16 24 C -0.09 -1.53 3.57 -88.86 -0.32 -1.84 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 C -0.11 -1.73 4.10 -26.94 -0.11 -1.84 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 3.97 8.60 -40.82 -0.35 3.62 16 35 H 0.07 1.25 6.80 -51.93 -0.35 0.89 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.10 2.70 5.96 -51.93 -0.31 2.39 16 40 H 0.02 0.38 6.15 -51.93 -0.32 0.06 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.33 7.15 -51.93 -0.37 0.95 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -31.33 344.75 -9.43 -40.75 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.96 Total: 1.88 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.44 Total: -4.68 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.29 Total: -51.11 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.33 -9.43 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755449706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.303 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds