Wall clock time and date at job start Tue Mar 31 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46995 * 2 1 4 4 C 1.50696 * 109.46973 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00434 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99885 * 179.97438 * 4 3 2 7 7 C 1.46506 * 120.00033 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.67181 * 35.00289 * 7 6 4 9 9 C 1.53328 * 109.68025 * 274.49701 * 7 6 4 10 10 C 1.52996 * 107.47019 * 175.19959 * 9 7 6 11 11 C 1.50741 * 111.26531 * 60.21530 * 10 9 7 12 12 H 1.09005 * 108.77693 * 185.58752 * 11 10 9 13 13 C 1.55500 * 113.78298 * 63.70061 * 11 10 9 14 14 N 1.47815 * 104.26031 * 198.80812 * 13 11 10 15 15 C 1.36930 * 125.65057 * 203.26546 * 14 13 11 16 16 H 1.07998 * 120.00327 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99892 * 0.04714 * 15 14 13 18 18 N 1.31622 * 119.99979 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47078 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47106 * 119.99433 * 19 17 15 22 22 H 1.48497 * 109.47311 * 239.99836 * 19 17 15 23 23 C 1.47176 * 108.70078 * 23.30173 * 14 13 11 24 24 C 1.53998 * 113.94462 * 307.67737 * 11 10 9 25 25 H 1.09006 * 112.20094 * 281.28640 * 24 11 10 26 26 C 1.52586 * 109.67431 * 155.50641 * 7 6 4 27 27 H 1.08993 * 109.47412 * 300.00059 * 1 2 3 28 28 H 1.08998 * 109.47225 * 60.00804 * 1 2 3 29 29 H 1.09007 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47247 * 239.99701 * 2 1 3 31 31 H 1.09007 * 109.47060 * 119.99795 * 2 1 3 32 32 H 1.09001 * 109.47368 * 59.99775 * 3 2 1 33 33 H 1.08997 * 109.46928 * 299.99938 * 3 2 1 34 34 H 0.97000 * 120.00155 * 0.02562 * 6 4 3 35 35 H 1.09004 * 109.73655 * 295.79092 * 9 7 6 36 36 H 1.08998 * 109.73893 * 56.49092 * 9 7 6 37 37 H 1.08997 * 110.07905 * 299.23179 * 10 9 7 38 38 H 1.09001 * 108.38359 * 180.08129 * 10 9 7 39 39 H 1.09002 * 110.45577 * 80.08283 * 13 11 10 40 40 H 1.08993 * 110.37643 * 317.50159 * 13 11 10 41 41 H 0.97000 * 120.00000 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.96183 * 241.57536 * 23 14 13 43 43 H 1.08998 * 109.99082 * 120.34852 * 23 14 13 44 44 H 1.08997 * 109.16874 * 302.48984 * 26 7 6 45 45 H 1.09005 * 109.16446 * 61.73406 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2208 2.6097 0.0002 7 6 5.6858 2.6098 0.0014 8 1 6.0533 1.7685 -0.5864 9 6 6.2010 2.4977 1.4412 10 6 7.7251 2.3805 1.3758 11 6 8.3386 3.5891 0.7163 12 1 9.4094 3.4203 0.6011 13 6 8.1126 4.9133 1.4994 14 7 8.3579 5.9740 0.4996 15 6 8.7190 7.2652 0.7780 16 1 8.8751 7.9679 -0.0271 17 6 8.8849 7.6708 2.0952 18 7 8.6947 6.8144 3.0764 19 14 9.3783 9.4320 2.4751 20 1 9.5299 10.1883 1.2061 21 1 8.3295 10.0706 3.3102 22 1 10.6682 9.4370 3.2108 23 6 8.1488 5.4128 -0.8448 24 6 7.7287 3.9292 -0.6563 25 1 8.1121 3.2857 -1.4482 26 6 6.2000 3.9168 -0.5949 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7358 3.4498 -0.0001 35 1 5.9042 3.3802 2.0081 36 1 5.7913 1.6032 1.9102 37 1 8.0081 1.4885 0.8170 38 1 8.1075 2.2984 2.3933 39 1 8.8214 4.9942 2.3236 40 1 7.0885 4.9658 1.8686 41 1 8.8103 7.0979 3.9968 42 1 9.0736 5.4677 -1.4190 43 1 7.3589 5.9607 -1.3586 44 1 5.8006 4.0320 -1.6025 45 1 5.8608 4.7493 0.0216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755449706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:34 Heat of formation + Delta-G solvation = -58.506681 kcal Electronic energy + Delta-G solvation = -22765.046715 eV Core-core repulsion = 19587.987039 eV Total energy + Delta-G solvation = -3177.059677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32336 -40.14373 -36.97797 -35.21525 -34.96704 -33.60476 -31.88041 -30.61966 -28.66752 -27.53061 -26.77835 -23.67600 -23.45831 -22.34487 -21.64060 -21.04209 -19.62437 -18.83738 -17.87449 -17.22233 -16.77768 -16.72993 -16.37384 -15.68548 -15.34454 -15.10872 -14.83023 -14.69381 -14.09144 -13.93284 -13.85545 -13.68253 -13.43035 -13.02420 -12.87403 -12.78680 -12.67748 -12.60330 -12.52158 -12.18102 -12.02527 -11.98066 -11.84774 -11.62687 -11.59963 -11.32077 -11.16237 -10.91807 -10.70009 -10.64432 -9.95350 -8.82800 -7.75476 -5.18115 1.46503 1.47241 1.57425 1.71738 2.26797 2.50638 3.34706 3.62710 3.71931 3.82002 3.84166 3.98398 4.07794 4.14583 4.18900 4.29042 4.35317 4.52391 4.54092 4.59981 4.63891 4.71782 4.73622 4.79601 4.87406 4.93581 4.96776 5.01687 5.08378 5.15586 5.24920 5.26443 5.30603 5.31962 5.39407 5.48029 5.50831 5.59789 5.61757 5.75427 5.89372 6.32951 6.64322 7.13550 7.33444 7.81637 8.46754 9.26769 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.003601 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.005517 B = 7774.087145 C = 8043.354817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.506 3.494 5 O -0.588 6.588 6 N -0.719 5.719 7 C 0.156 3.844 8 H 0.080 0.920 9 C -0.118 4.118 10 C -0.091 4.091 11 C -0.103 4.103 12 H 0.055 0.945 13 C 0.175 3.825 14 N -0.628 5.628 15 C -0.234 4.234 16 H 0.079 0.921 17 C -0.069 4.069 18 N -0.948 5.948 19 Si 0.977 3.023 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.294 1.294 23 C 0.132 3.868 24 C -0.078 4.078 25 H 0.104 0.896 26 C -0.103 4.103 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.412 0.588 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.058 0.942 40 H -0.004 1.004 41 H 0.245 0.755 42 H 0.020 0.980 43 H 0.030 0.970 44 H 0.082 0.918 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.818 -10.633 -7.667 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.174 4.174 4 C 0.295 3.705 5 O -0.468 6.468 6 N -0.369 5.369 7 C 0.051 3.949 8 H 0.098 0.902 9 C -0.156 4.156 10 C -0.129 4.129 11 C -0.123 4.123 12 H 0.074 0.926 13 C 0.050 3.950 14 N -0.354 5.354 15 C -0.363 4.363 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.598 5.598 19 Si 0.806 3.194 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.221 1.221 23 C 0.007 3.993 24 C -0.097 4.097 25 H 0.122 0.878 26 C -0.141 4.141 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.248 0.752 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.014 0.986 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.101 0.899 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.351 -11.215 -7.541 18.997 hybrid contribution 0.442 1.526 0.687 1.731 sum -12.909 -9.689 -6.853 17.535 Atomic orbital electron populations 1.21759 0.93692 1.02364 1.02686 1.21251 0.96690 0.94805 1.01990 1.21780 0.88931 1.00290 1.06434 1.21438 0.91750 0.82953 0.74366 1.90672 1.71716 1.32804 1.51620 1.46128 1.06951 1.09260 1.74602 1.20781 0.79688 0.98434 0.96022 0.90171 1.21869 0.95875 1.00933 0.96938 1.20773 0.94608 0.96909 1.00652 1.21863 0.99118 0.95421 0.95885 0.92629 1.21746 0.97127 0.84223 0.91886 1.44892 1.80671 1.07788 1.02015 1.19471 1.37859 0.86762 0.92244 0.90327 1.25596 1.02982 1.01988 0.95527 1.70101 1.57161 1.34146 0.98371 0.85021 0.76904 0.79660 0.77823 1.19181 1.21956 1.22073 1.21799 0.97193 0.93121 0.87144 1.22054 0.94874 0.95309 0.97438 0.87770 1.21623 0.94991 0.96048 1.01416 0.91900 0.91587 0.92308 0.92703 0.93096 0.87034 0.86471 0.75221 0.92704 0.92473 0.90452 0.92541 0.92342 0.98611 0.94545 0.96183 0.95233 0.89944 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.11 -1.83 5.22 30.59 0.16 -1.67 16 3 C -0.13 -2.02 5.70 29.85 0.17 -1.85 16 4 C 0.51 12.03 7.80 87.66 0.68 12.72 16 5 O -0.59 -19.06 15.65 -3.05 -0.05 -19.10 16 6 N -0.72 -16.11 5.09 -442.64 -2.25 -18.36 16 7 C 0.16 4.22 2.40 44.96 0.11 4.33 16 8 H 0.08 2.32 7.58 -2.38 -0.02 2.30 16 9 C -0.12 -3.62 5.41 30.70 0.17 -3.46 16 10 C -0.09 -2.90 5.42 29.86 0.16 -2.73 16 11 C -0.10 -3.83 2.87 -10.33 -0.03 -3.86 16 12 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 13 C 0.17 8.52 4.86 86.99 0.42 8.94 16 14 N -0.63 -32.07 3.41 -687.40 -2.34 -34.42 16 15 C -0.23 -13.13 10.28 84.03 0.86 -12.26 16 16 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 17 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 18 N -0.95 -56.67 10.11 21.65 0.22 -56.45 16 19 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 23 C 0.13 5.33 6.55 87.05 0.57 5.90 16 24 C -0.08 -2.51 3.57 -9.65 -0.03 -2.54 16 25 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 26 C -0.10 -2.92 4.10 30.46 0.13 -2.80 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 31 H 0.05 1.02 8.10 -2.38 -0.02 1.00 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 7.20 8.60 -92.71 -0.80 6.40 16 35 H 0.05 1.89 6.80 -2.39 -0.02 1.88 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.06 3.34 5.96 -2.39 -0.01 3.33 16 40 H 0.00 -0.21 6.15 -2.39 -0.01 -0.22 16 41 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.03 1.15 7.74 -2.39 -0.02 1.14 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.05 1.79 7.15 -2.38 -0.02 1.77 16 Total: -1.00 -69.64 344.75 2.31 -67.34 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.16 Total: 16.85 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.55 Total: -3.69 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -4.38 Total: -109.23 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.64 2.31 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755449706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.830 kcal (2) G-P(sol) polarization free energy of solvation -69.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds