Wall clock time and date at job start Tue Mar 31 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47219 * 2 1 4 4 C 1.50700 * 109.46929 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00056 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99753 * 180.02562 * 4 3 2 7 7 C 1.46498 * 120.00088 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.02706 * 33.96094 * 7 6 4 9 9 C 1.52525 * 109.04372 * 275.00660 * 7 6 4 10 10 C 1.53816 * 111.64351 * 185.43113 * 9 7 6 11 11 C 1.51468 * 107.10191 * 57.55851 * 10 9 7 12 12 H 1.09004 * 111.27265 * 55.58517 * 11 10 9 13 13 C 1.53063 * 116.69256 * 183.71373 * 11 10 9 14 14 N 1.48664 * 103.44251 * 155.85457 * 13 11 10 15 15 C 1.36933 * 125.78147 * 155.58764 * 14 13 11 16 16 H 1.08002 * 120.00452 * 355.54639 * 15 14 13 17 17 C 1.38817 * 119.99798 * 175.55165 * 15 14 13 18 18 N 1.31616 * 120.00093 * 7.30277 * 17 15 14 19 19 Si 1.86802 * 119.99771 * 187.31168 * 17 15 14 20 20 H 1.48498 * 109.47195 * 94.98560 * 19 17 15 21 21 H 1.48503 * 109.46728 * 214.98277 * 19 17 15 22 22 H 1.48500 * 109.47127 * 334.97854 * 19 17 15 23 23 C 1.48239 * 108.43120 * 335.62767 * 14 13 11 24 24 C 1.52333 * 105.86698 * 356.81020 * 23 14 13 25 25 H 1.08997 * 110.24381 * 272.17999 * 24 23 14 26 26 C 1.51445 * 117.45068 * 145.32131 * 24 23 14 27 27 H 1.09006 * 109.46549 * 299.99494 * 1 2 3 28 28 H 1.08997 * 109.47267 * 59.99631 * 1 2 3 29 29 H 1.09002 * 109.47553 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47040 * 240.00334 * 2 1 3 31 31 H 1.09004 * 109.47585 * 120.00224 * 2 1 3 32 32 H 1.08995 * 109.46695 * 60.00340 * 3 2 1 33 33 H 1.08997 * 109.46984 * 299.99904 * 3 2 1 34 34 H 0.96996 * 119.99947 * 0.02562 * 6 4 3 35 35 H 1.09003 * 109.03128 * 305.95959 * 9 7 6 36 36 H 1.08991 * 109.03784 * 64.89313 * 9 7 6 37 37 H 1.09004 * 109.94555 * 176.87341 * 10 9 7 38 38 H 1.09003 * 109.94270 * 298.12274 * 10 9 7 39 39 H 1.08996 * 110.62738 * 274.34598 * 13 11 10 40 40 H 1.08998 * 110.62463 * 37.37143 * 13 11 10 41 41 H 0.97001 * 119.99844 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.16737 * 237.71040 * 23 14 13 43 43 H 1.09004 * 110.17587 * 115.91479 * 23 14 13 44 44 H 1.08996 * 109.94263 * 61.84321 * 26 24 23 45 45 H 1.09003 * 109.93600 * 300.61591 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1533 0.3921 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0003 8 1 6.0412 1.7553 -0.5762 9 6 6.1836 2.4834 1.4359 10 6 7.7141 2.6119 1.5193 11 6 8.0820 3.9524 0.9176 12 1 7.5521 4.7666 1.4121 13 6 9.5752 4.2707 0.8090 14 7 9.6370 5.2664 -0.2932 15 6 10.6245 6.1971 -0.4770 16 1 11.4138 6.2984 0.2532 17 6 10.6110 7.0104 -1.6019 18 7 9.5778 6.9892 -2.4170 19 14 12.0593 8.1349 -1.9587 20 1 12.9926 7.4581 -2.8947 21 1 11.5683 9.3944 -2.5736 22 1 12.7682 8.4463 -0.6915 23 6 8.4479 5.0817 -1.1589 24 6 7.7002 3.8829 -0.5893 25 1 8.0799 2.9593 -1.0261 26 6 6.1877 3.9038 -0.6635 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7359 3.4497 0.0009 35 1 5.7276 3.2675 2.0404 36 1 5.8864 1.5121 1.8310 37 1 8.0343 2.5731 2.5606 38 1 8.1861 1.8083 0.9539 39 1 9.9442 4.7037 1.7387 40 1 10.1407 3.3757 0.5499 41 1 9.5686 7.5573 -3.2032 42 1 8.7574 4.8791 -2.1842 43 1 7.8164 5.9695 -1.1248 44 1 5.8671 3.9365 -1.7047 45 1 5.8013 4.7705 -0.1272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755449708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:43 Heat of formation + Delta-G solvation = -37.806315 kcal Electronic energy + Delta-G solvation = -22433.757716 eV Core-core repulsion = 19257.595675 eV Total energy + Delta-G solvation = -3176.162041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.19093 -38.87734 -35.76289 -34.50502 -33.54524 -31.59741 -30.93898 -29.03854 -27.71494 -26.17674 -24.88471 -22.37902 -21.96709 -20.69173 -20.37307 -19.82378 -19.26460 -17.16155 -16.68228 -16.03596 -15.91458 -14.87974 -14.54919 -14.29387 -14.13448 -14.03404 -13.85497 -13.39228 -13.29395 -12.54921 -12.37702 -12.11134 -12.09992 -11.94361 -11.79292 -11.61548 -11.42037 -11.12541 -10.99445 -10.98573 -10.82907 -10.63294 -10.51500 -10.12936 -9.95816 -9.84676 -9.76365 -9.48333 -9.42400 -8.90607 -8.55483 -6.79298 -5.68736 -2.99700 2.61952 3.15743 3.42252 3.47506 3.49217 4.52175 4.57648 4.65809 4.75139 4.88485 4.92985 5.15464 5.22495 5.23454 5.34062 5.36296 5.41849 5.48282 5.55144 5.67172 5.69726 5.71492 5.77876 5.82484 5.90230 6.06182 6.08203 6.20961 6.24630 6.28647 6.32985 6.43836 6.46566 6.53729 6.61703 6.69049 6.86634 7.08762 7.50063 7.57612 7.66500 7.84776 8.21916 8.25980 9.23595 9.84639 10.53358 11.43935 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040018 B = 0.003188 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.522738 B = 8781.535423 C = 9283.919682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.509 3.491 5 O -0.544 6.544 6 N -0.727 5.727 7 C 0.146 3.854 8 H 0.084 0.916 9 C -0.122 4.122 10 C -0.099 4.099 11 C -0.108 4.108 12 H 0.074 0.926 13 C 0.141 3.859 14 N -0.610 5.610 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.909 3.091 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.190 3.810 24 C -0.114 4.114 25 H 0.065 0.935 26 C -0.104 4.104 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.021 0.979 41 H 0.251 0.749 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.491 -9.858 6.019 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.296 3.704 5 O -0.421 6.421 6 N -0.378 5.378 7 C 0.042 3.958 8 H 0.102 0.898 9 C -0.161 4.161 10 C -0.138 4.138 11 C -0.127 4.127 12 H 0.092 0.908 13 C 0.015 3.985 14 N -0.337 5.337 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.207 1.207 23 C 0.066 3.934 24 C -0.134 4.134 25 H 0.083 0.917 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.992 -10.445 5.859 19.979 hybrid contribution 0.500 1.154 -0.266 1.285 sum -15.492 -9.291 5.593 18.910 Atomic orbital electron populations 1.21798 0.95595 1.01892 1.01737 1.21274 0.95116 0.94810 1.03554 1.21734 0.92084 1.00103 1.04279 1.20762 0.90232 0.83795 0.75654 1.90697 1.70555 1.31347 1.49496 1.46245 1.07788 1.08498 1.75246 1.21139 0.78286 0.99690 0.96702 0.89817 1.21859 0.96449 1.01593 0.96169 1.21250 0.94286 0.97557 1.00706 1.22078 0.98123 0.96276 0.96226 0.90805 1.21324 0.92764 0.92513 0.91903 1.45103 1.24447 1.36805 1.27357 1.19086 1.01598 1.10269 1.04324 0.90488 1.24792 0.98045 1.00181 0.97606 1.69971 1.28647 1.42578 1.15738 0.86135 0.82045 0.79844 0.78000 1.21702 1.21855 1.20702 1.20779 0.86835 0.91991 0.93791 1.22066 0.93383 1.01415 0.96554 0.91683 1.21499 0.96583 0.95744 1.00409 0.92741 0.92688 0.92474 0.91253 0.91305 0.89059 0.88990 0.76712 0.92250 0.92119 0.91993 0.91723 0.94382 0.96122 0.93876 0.93176 0.94439 0.91434 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.15 0.37 -0.60 16 2 C -0.11 -0.93 5.22 -26.73 -0.14 -1.07 16 3 C -0.14 -1.13 5.70 -27.88 -0.16 -1.29 16 4 C 0.51 6.03 7.78 -10.98 -0.09 5.95 16 5 O -0.54 -8.69 15.61 5.56 0.09 -8.61 16 6 N -0.73 -7.96 5.03 -53.62 -0.27 -8.23 16 7 C 0.15 1.95 2.44 -67.74 -0.17 1.78 16 8 H 0.08 1.30 7.52 -51.93 -0.39 0.91 16 9 C -0.12 -1.61 5.38 -26.55 -0.14 -1.75 16 10 C -0.10 -1.41 5.69 -27.08 -0.15 -1.57 16 11 C -0.11 -1.86 2.48 -89.97 -0.22 -2.08 16 12 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 13 C 0.14 2.93 6.90 -2.81 -0.02 2.91 16 14 N -0.61 -15.75 3.45 -170.41 -0.59 -16.34 16 15 C -0.22 -6.33 10.29 -15.06 -0.15 -6.49 16 16 H 0.08 2.11 7.84 -52.49 -0.41 1.69 16 17 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 18 N -0.92 -27.19 10.41 55.49 0.58 -26.61 16 19 Si 0.91 22.30 29.56 -169.99 -5.02 17.28 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.19 4.57 5.08 -3.43 -0.02 4.56 16 24 C -0.11 -2.09 2.31 -90.36 -0.21 -2.30 16 25 H 0.06 1.21 7.91 -51.93 -0.41 0.79 16 26 C -0.10 -1.52 5.17 -27.08 -0.14 -1.66 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 3.30 8.61 -40.82 -0.35 2.95 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.05 1.35 7.26 -51.93 -0.38 0.98 16 43 H 0.04 0.98 7.66 -51.93 -0.40 0.58 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -32.32 350.15 -9.49 -41.81 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.21 Total: -0.59 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.34 Total: -3.99 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.28 Total: -51.18 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.32 -9.49 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755449708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.006 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds