Wall clock time and date at job start Tue Mar 31 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47219 * 2 1 4 4 C 1.50700 * 109.46929 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00056 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99753 * 180.02562 * 4 3 2 7 7 C 1.46498 * 120.00088 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.02706 * 33.96094 * 7 6 4 9 9 C 1.52525 * 109.04372 * 275.00660 * 7 6 4 10 10 C 1.53816 * 111.64351 * 185.43113 * 9 7 6 11 11 C 1.51468 * 107.10191 * 57.55851 * 10 9 7 12 12 H 1.09004 * 111.27265 * 55.58517 * 11 10 9 13 13 C 1.53063 * 116.69256 * 183.71373 * 11 10 9 14 14 N 1.48664 * 103.44251 * 155.85457 * 13 11 10 15 15 C 1.36933 * 125.78147 * 155.58764 * 14 13 11 16 16 H 1.08002 * 120.00452 * 355.54639 * 15 14 13 17 17 C 1.38817 * 119.99798 * 175.55165 * 15 14 13 18 18 N 1.31616 * 120.00093 * 7.30277 * 17 15 14 19 19 Si 1.86802 * 119.99771 * 187.31168 * 17 15 14 20 20 H 1.48498 * 109.47195 * 94.98560 * 19 17 15 21 21 H 1.48503 * 109.46728 * 214.98277 * 19 17 15 22 22 H 1.48500 * 109.47127 * 334.97854 * 19 17 15 23 23 C 1.48239 * 108.43120 * 335.62767 * 14 13 11 24 24 C 1.52333 * 105.86698 * 356.81020 * 23 14 13 25 25 H 1.08997 * 110.24381 * 272.17999 * 24 23 14 26 26 C 1.51445 * 117.45068 * 145.32131 * 24 23 14 27 27 H 1.09006 * 109.46549 * 299.99494 * 1 2 3 28 28 H 1.08997 * 109.47267 * 59.99631 * 1 2 3 29 29 H 1.09002 * 109.47553 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47040 * 240.00334 * 2 1 3 31 31 H 1.09004 * 109.47585 * 120.00224 * 2 1 3 32 32 H 1.08995 * 109.46695 * 60.00340 * 3 2 1 33 33 H 1.08997 * 109.46984 * 299.99904 * 3 2 1 34 34 H 0.96996 * 119.99947 * 0.02562 * 6 4 3 35 35 H 1.09003 * 109.03128 * 305.95959 * 9 7 6 36 36 H 1.08991 * 109.03784 * 64.89313 * 9 7 6 37 37 H 1.09004 * 109.94555 * 176.87341 * 10 9 7 38 38 H 1.09003 * 109.94270 * 298.12274 * 10 9 7 39 39 H 1.08996 * 110.62738 * 274.34598 * 13 11 10 40 40 H 1.08998 * 110.62463 * 37.37143 * 13 11 10 41 41 H 0.97001 * 119.99844 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.16737 * 237.71040 * 23 14 13 43 43 H 1.09004 * 110.17587 * 115.91479 * 23 14 13 44 44 H 1.08996 * 109.94263 * 61.84321 * 26 24 23 45 45 H 1.09003 * 109.93600 * 300.61591 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1533 0.3921 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0003 8 1 6.0412 1.7553 -0.5762 9 6 6.1836 2.4834 1.4359 10 6 7.7141 2.6119 1.5193 11 6 8.0820 3.9524 0.9176 12 1 7.5521 4.7666 1.4121 13 6 9.5752 4.2707 0.8090 14 7 9.6370 5.2664 -0.2932 15 6 10.6245 6.1971 -0.4770 16 1 11.4138 6.2984 0.2532 17 6 10.6110 7.0104 -1.6019 18 7 9.5778 6.9892 -2.4170 19 14 12.0593 8.1349 -1.9587 20 1 12.9926 7.4581 -2.8947 21 1 11.5683 9.3944 -2.5736 22 1 12.7682 8.4463 -0.6915 23 6 8.4479 5.0817 -1.1589 24 6 7.7002 3.8829 -0.5893 25 1 8.0799 2.9593 -1.0261 26 6 6.1877 3.9038 -0.6635 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7359 3.4497 0.0009 35 1 5.7276 3.2675 2.0404 36 1 5.8864 1.5121 1.8310 37 1 8.0343 2.5731 2.5606 38 1 8.1861 1.8083 0.9539 39 1 9.9442 4.7037 1.7387 40 1 10.1407 3.3757 0.5499 41 1 9.5686 7.5573 -3.2032 42 1 8.7574 4.8791 -2.1842 43 1 7.8164 5.9695 -1.1248 44 1 5.8671 3.9365 -1.7047 45 1 5.8013 4.7705 -0.1272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755449708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:42 Heat of formation + Delta-G solvation = -57.896242 kcal Electronic energy + Delta-G solvation = -22434.628881 eV Core-core repulsion = 19257.595675 eV Total energy + Delta-G solvation = -3177.033206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.32933 -40.17017 -37.16976 -35.22138 -35.03621 -33.32595 -32.31530 -30.48377 -28.71455 -27.74503 -26.59349 -23.60012 -23.12277 -21.73148 -21.60498 -21.30758 -20.63727 -18.80782 -18.00980 -17.11547 -16.80737 -16.61541 -15.85040 -15.71793 -15.61132 -15.16230 -15.01906 -14.80087 -14.05540 -13.93855 -13.68541 -13.51445 -13.44575 -13.23432 -12.90371 -12.76930 -12.76153 -12.61489 -12.54912 -12.12883 -12.00590 -11.94036 -11.76321 -11.71980 -11.59701 -11.51561 -11.24896 -10.85037 -10.71675 -10.66955 -9.98155 -8.88855 -7.85079 -5.18313 1.45172 1.47540 1.56076 1.71753 2.24688 2.49751 3.33300 3.57525 3.62569 3.69159 3.81705 3.94719 4.07981 4.11776 4.17167 4.39056 4.42485 4.47844 4.54122 4.61822 4.69761 4.74308 4.74548 4.79263 4.80635 4.94490 4.96445 5.03889 5.09236 5.15354 5.17707 5.23830 5.27971 5.30965 5.38834 5.46160 5.48296 5.55949 5.62180 5.72367 5.79969 6.18095 6.64822 7.09285 7.34576 7.75952 8.44214 9.26268 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040018 B = 0.003188 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.522738 B = 8781.535423 C = 9283.919682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.505 3.495 5 O -0.590 6.590 6 N -0.717 5.717 7 C 0.155 3.845 8 H 0.062 0.938 9 C -0.114 4.114 10 C -0.092 4.092 11 C -0.090 4.090 12 H 0.075 0.925 13 C 0.134 3.866 14 N -0.635 5.635 15 C -0.241 4.241 16 H 0.081 0.919 17 C -0.068 4.068 18 N -0.950 5.950 19 Si 0.976 3.024 20 H -0.290 1.290 21 H -0.294 1.294 22 H -0.267 1.267 23 C 0.201 3.799 24 C -0.105 4.105 25 H 0.060 0.940 26 C -0.093 4.093 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.415 0.585 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.024 0.976 41 H 0.246 0.754 42 H 0.008 0.992 43 H 0.009 0.991 44 H 0.067 0.933 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.968 -9.809 7.489 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.173 4.173 4 C 0.294 3.706 5 O -0.471 6.471 6 N -0.368 5.368 7 C 0.050 3.950 8 H 0.080 0.920 9 C -0.153 4.153 10 C -0.130 4.130 11 C -0.109 4.109 12 H 0.093 0.907 13 C 0.009 3.991 14 N -0.362 5.362 15 C -0.370 4.370 16 H 0.099 0.901 17 C -0.261 4.261 18 N -0.599 5.599 19 Si 0.805 3.195 20 H -0.217 1.217 21 H -0.220 1.220 22 H -0.192 1.192 23 C 0.076 3.924 24 C -0.125 4.125 25 H 0.078 0.922 26 C -0.131 4.131 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.086 0.914 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.488 -10.391 7.360 21.633 hybrid contribution 1.001 1.122 -0.727 1.670 sum -16.488 -9.269 6.633 20.044 Atomic orbital electron populations 1.21757 0.93664 1.02320 1.02744 1.21259 0.96718 0.94996 1.01895 1.21773 0.88772 1.00142 1.06591 1.21488 0.91823 0.83005 0.74332 1.90684 1.71759 1.32997 1.51619 1.46098 1.06689 1.09345 1.74694 1.20833 0.79934 0.97683 0.96549 0.92014 1.21776 0.95467 1.02095 0.95916 1.21204 0.95169 0.95121 1.01529 1.21956 0.95315 0.98171 0.95444 0.90683 1.21529 0.95497 0.91426 0.90611 1.45472 1.24448 1.37243 1.28992 1.19476 1.02294 1.10690 1.04510 0.90126 1.25646 1.00618 1.02179 0.97665 1.70187 1.30321 1.43406 1.15965 0.85084 0.78796 0.77586 0.78046 1.21675 1.22031 1.19207 1.20496 0.86625 0.93153 0.92118 1.21870 0.95465 0.98222 0.96935 0.92150 1.21379 0.93740 0.97032 1.00980 0.91567 0.91766 0.92456 0.93176 0.92878 0.86374 0.86736 0.74782 0.90661 0.92192 0.89969 0.92101 0.93747 0.95863 0.94461 0.97342 0.97294 0.91409 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.11 -1.72 5.22 30.59 0.16 -1.56 16 3 C -0.13 -1.74 5.70 29.85 0.17 -1.57 16 4 C 0.50 11.06 7.78 87.66 0.68 11.74 16 5 O -0.59 -18.57 15.61 -3.03 -0.05 -18.62 16 6 N -0.72 -13.99 5.03 -441.94 -2.22 -16.22 16 7 C 0.16 3.89 2.44 45.12 0.11 4.00 16 8 H 0.06 1.87 7.52 -2.39 -0.02 1.85 16 9 C -0.11 -2.71 5.38 30.71 0.17 -2.54 16 10 C -0.09 -2.40 5.69 30.37 0.17 -2.23 16 11 C -0.09 -2.98 2.48 -10.37 -0.03 -3.01 16 12 H 0.07 2.52 8.04 -2.38 -0.02 2.50 16 13 C 0.13 5.53 6.90 85.98 0.59 6.12 16 14 N -0.63 -33.41 3.45 -693.06 -2.39 -35.80 16 15 C -0.24 -13.80 10.29 84.04 0.86 -12.93 16 16 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 17 C -0.07 -3.95 5.48 84.86 0.46 -3.49 16 18 N -0.95 -57.88 10.41 21.65 0.23 -57.65 16 19 Si 0.98 46.47 29.56 68.60 2.03 48.50 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.20 9.99 5.08 85.82 0.44 10.43 16 24 C -0.11 -3.84 2.31 -10.62 -0.02 -3.86 16 25 H 0.06 2.26 7.91 -2.39 -0.02 2.24 16 26 C -0.09 -2.62 5.17 30.37 0.16 -2.46 16 27 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 31 H 0.05 0.98 8.10 -2.38 -0.02 0.96 16 32 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.42 5.51 8.61 -92.71 -0.80 4.72 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.67 7.98 -2.39 -0.02 1.65 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.01 0.47 7.26 -2.39 -0.02 0.46 16 43 H 0.01 0.48 7.66 -2.38 -0.02 0.47 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 Total: -1.00 -72.72 350.15 2.37 -70.34 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.15 Total: 11.62 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 4.64 Total: -2.18 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.39 Total: -109.66 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.05 Total: -18.62 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -72.72 2.37 -70.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755449708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.446 kcal (2) G-P(sol) polarization free energy of solvation -72.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds