Wall clock time and date at job start Tue Mar 31 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99860 * 2 1 4 4 H 1.09002 * 109.47318 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.46869 * 120.00540 * 3 2 1 6 6 C 1.52996 * 109.46865 * 294.75631 * 5 3 2 7 7 C 1.53000 * 109.47361 * 240.00247 * 3 2 1 8 8 C 1.50697 * 109.47064 * 174.01474 * 7 3 2 9 9 O 1.21278 * 120.00376 * 353.87692 * 8 7 3 10 10 N 1.34774 * 119.99879 * 173.87544 * 8 7 3 11 11 C 1.46501 * 120.00366 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.84597 * 334.66738 * 11 10 8 13 13 C 1.53780 * 113.61416 * 105.86375 * 11 10 8 14 14 C 1.54043 * 86.98506 * 89.16403 * 13 11 10 15 15 H 1.09002 * 113.61724 * 270.87797 * 14 13 11 16 16 C 1.53006 * 113.69613 * 139.99024 * 14 13 11 17 17 N 1.46501 * 109.47210 * 87.46487 * 16 14 13 18 18 C 1.36939 * 119.99737 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00285 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99401 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00394 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99486 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47008 * 60.00066 * 22 20 18 24 24 H 1.48502 * 109.46833 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47226 * 299.99683 * 22 20 18 26 26 C 1.53777 * 87.08024 * 25.43300 * 14 13 11 27 27 H 1.07997 * 120.00268 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99589 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99600 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46733 * 174.75603 * 5 3 2 31 31 H 1.08998 * 109.46853 * 54.75409 * 5 3 2 32 32 H 1.08997 * 109.47550 * 55.25972 * 6 5 3 33 33 H 1.09004 * 109.46995 * 175.26034 * 6 5 3 34 34 H 1.09004 * 109.47726 * 295.25932 * 6 5 3 35 35 H 1.09002 * 109.47170 * 294.01982 * 7 3 2 36 36 H 1.09006 * 109.46509 * 54.01756 * 7 3 2 37 37 H 0.97004 * 120.00040 * 0.02562 * 10 8 7 38 38 H 1.09000 * 113.61140 * 203.66759 * 13 11 10 39 39 H 1.09002 * 113.61503 * 334.56555 * 13 11 10 40 40 H 1.09000 * 109.47073 * 207.46886 * 16 14 13 41 41 H 1.09000 * 109.46957 * 327.46291 * 16 14 13 42 42 H 0.96999 * 120.00000 * 0.02562 * 17 16 14 43 43 H 0.96999 * 120.00189 * 180.02562 * 21 20 18 44 44 H 1.09007 * 113.61462 * 220.02681 * 26 14 13 45 45 H 1.08990 * 113.61758 * 89.11795 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9433 1.3861 1.2492 6 6 2.0565 1.4366 2.4950 7 6 2.9431 1.3863 -1.2493 8 6 3.5829 2.7485 -1.3255 9 8 3.2729 3.6095 -0.5296 10 7 4.4996 3.0101 -2.2782 11 6 5.1220 4.3343 -2.3521 12 1 4.4992 5.1192 -1.9229 13 6 6.5764 4.3600 -1.8532 14 6 6.9923 4.0252 -3.2982 15 1 7.0406 2.9555 -3.5020 16 6 8.2393 4.7765 -3.7689 17 7 9.4360 4.0170 -3.3981 18 6 10.6779 4.4974 -3.7175 19 1 10.7753 5.4358 -4.2430 20 6 11.8118 3.7774 -3.3666 21 7 11.6931 2.6335 -2.7266 22 14 13.5060 4.4324 -3.8029 23 1 13.7067 5.7547 -3.1577 24 1 14.5424 3.4844 -3.3206 25 1 13.6158 4.5787 -5.2765 26 6 5.6741 4.6787 -3.7455 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 3.5572 2.2855 1.2035 31 1 3.5876 0.5082 1.2973 32 1 1.3832 0.5795 2.4968 33 1 2.6818 1.4094 3.3874 34 1 1.4727 2.3571 2.4884 35 1 3.7192 0.6227 -1.1974 36 1 2.3307 1.2223 -2.1360 37 1 4.7472 2.3216 -2.9151 38 1 6.9066 5.3441 -1.5207 39 1 6.8064 3.5710 -1.1372 40 1 8.2050 4.8948 -4.8519 41 1 8.2715 5.7586 -3.2970 42 1 9.3485 3.1740 -2.9265 43 1 12.4854 2.1307 -2.4812 44 1 5.1760 4.1467 -4.5561 45 1 5.7580 5.7497 -3.9293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755477244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:41 Heat of formation + Delta-G solvation = -7.819306 kcal Electronic energy + Delta-G solvation = -21536.689596 eV Core-core repulsion = 18361.827889 eV Total energy + Delta-G solvation = -3174.861707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32938 -38.67241 -36.75825 -34.51105 -33.14691 -32.00074 -31.01300 -30.27774 -26.86954 -25.49013 -24.92235 -23.25749 -22.08097 -21.39704 -20.65284 -19.81637 -19.04304 -17.19449 -16.94602 -16.00781 -15.49858 -15.05644 -14.99854 -14.80529 -14.43940 -14.11955 -13.84214 -13.50184 -13.37763 -13.07010 -12.89014 -12.63492 -12.35806 -12.12751 -12.04246 -11.62131 -11.41176 -11.32691 -11.02536 -10.90724 -10.81148 -10.73318 -10.46563 -10.34733 -10.09203 -9.83511 -9.80885 -9.61310 -9.55086 -8.96788 -8.82357 -6.89116 -5.74745 -3.02882 2.00372 2.59304 3.13411 3.45030 3.49146 3.50330 4.45910 4.51694 4.59188 4.69333 4.79210 4.85116 4.96258 5.01380 5.12634 5.14644 5.16017 5.25801 5.32093 5.51742 5.59350 5.59415 5.73987 5.76097 5.78839 5.88572 5.95067 5.96439 6.03486 6.12332 6.16769 6.20426 6.26354 6.33537 6.38759 6.44197 6.54168 6.66413 6.79927 6.95445 7.48361 7.70966 8.20424 8.44604 9.55415 10.14756 10.49217 11.48238 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.002744 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.038965 B =10202.917526 C =10675.800575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C -0.046 4.046 4 H 0.083 0.917 5 C -0.121 4.121 6 C -0.148 4.148 7 C -0.136 4.136 8 C 0.515 3.485 9 O -0.539 6.539 10 N -0.711 5.711 11 C 0.116 3.884 12 H 0.097 0.903 13 C -0.138 4.138 14 C -0.113 4.113 15 H 0.087 0.913 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.138 4.138 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.401 0.599 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.691 -4.364 3.373 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C -0.065 4.065 4 H 0.102 0.898 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.176 4.176 8 C 0.302 3.698 9 O -0.416 6.416 10 N -0.362 5.362 11 C 0.010 3.990 12 H 0.115 0.885 13 C -0.177 4.177 14 C -0.132 4.132 15 H 0.105 0.895 16 C 0.035 3.965 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.177 4.177 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.235 0.765 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.779 -3.633 3.889 23.392 hybrid contribution 1.215 -0.409 -0.456 1.360 sum -21.564 -4.042 3.433 22.206 Atomic orbital electron populations 1.23855 0.95946 1.01755 1.01509 1.22950 0.95923 0.98076 0.99228 1.20164 0.96945 0.95709 0.93669 0.89841 1.21611 0.97999 1.02743 0.93445 1.21733 0.99770 1.01590 0.97456 1.21717 1.00434 0.95040 1.00375 1.20654 0.78845 0.90040 0.80304 1.90682 1.62553 1.48146 1.40246 1.45754 1.42087 1.14689 1.33637 1.21922 0.94272 0.84990 0.97785 0.88486 1.23446 0.94222 1.02755 0.97284 1.22798 0.94462 1.00173 0.95718 0.89466 1.20639 0.85531 0.93860 0.96518 1.42342 1.00576 1.25048 1.69612 1.19204 0.83783 1.03686 1.30361 0.91295 1.24740 0.97828 0.97206 1.01333 1.69646 1.28427 1.15056 1.45230 0.86264 0.84203 0.77774 0.77937 1.21287 1.21698 1.21296 1.23301 0.96723 1.02022 0.95623 0.88622 0.88584 0.87349 0.90249 0.92380 0.92901 0.92992 0.92834 0.88738 0.88722 0.76452 0.89229 0.91370 0.96437 0.96236 0.78346 0.93508 0.91315 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 14.32 29.01 0.42 -0.95 16 2 C -0.14 -1.09 7.69 -36.03 -0.28 -1.37 16 3 C -0.05 -0.42 1.79 -91.77 -0.16 -0.58 16 4 H 0.08 0.88 7.47 -51.93 -0.39 0.49 16 5 C -0.12 -1.22 5.20 -26.73 -0.14 -1.36 16 6 C -0.15 -1.37 9.80 37.16 0.36 -1.01 16 7 C -0.14 -1.15 5.15 -27.88 -0.14 -1.29 16 8 C 0.51 6.05 7.38 -10.99 -0.08 5.97 16 9 O -0.54 -8.23 13.93 5.56 0.08 -8.16 16 10 N -0.71 -7.82 5.26 -53.02 -0.28 -8.10 16 11 C 0.12 1.46 4.30 -67.12 -0.29 1.17 16 12 H 0.10 1.31 7.50 -51.93 -0.39 0.92 16 13 C -0.14 -2.07 7.45 -25.78 -0.19 -2.27 16 14 C -0.11 -1.74 3.64 -89.67 -0.33 -2.07 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 16 C 0.16 3.24 6.10 -4.04 -0.02 3.21 16 17 N -0.73 -18.70 5.60 -59.91 -0.34 -19.04 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C -0.14 -1.66 7.38 -25.92 -0.19 -1.85 16 27 H 0.10 0.68 7.83 -52.49 -0.41 0.27 16 28 H 0.10 0.57 8.06 -52.49 -0.42 0.14 16 29 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.08 1.00 6.19 -51.93 -0.32 0.68 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.44 7.24 -51.93 -0.38 0.07 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.40 3.57 8.70 -40.82 -0.36 3.22 16 38 H 0.09 1.38 7.91 -51.93 -0.41 0.97 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 42 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 45 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.41 366.42 -8.60 -41.01 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.99 Total: 8.85 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.29 Total: -9.88 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.11 Total: -54.93 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.41 -8.60 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755477244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.190 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds