Wall clock time and date at job start Tue Mar 31 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99860 * 2 1 4 4 H 1.09002 * 109.47318 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.46869 * 120.00540 * 3 2 1 6 6 C 1.52996 * 109.46865 * 294.75631 * 5 3 2 7 7 C 1.53000 * 109.47361 * 240.00247 * 3 2 1 8 8 C 1.50697 * 109.47064 * 174.01474 * 7 3 2 9 9 O 1.21278 * 120.00376 * 353.87692 * 8 7 3 10 10 N 1.34774 * 119.99879 * 173.87544 * 8 7 3 11 11 C 1.46501 * 120.00366 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.84597 * 334.66738 * 11 10 8 13 13 C 1.53780 * 113.61416 * 105.86375 * 11 10 8 14 14 C 1.54043 * 86.98506 * 89.16403 * 13 11 10 15 15 H 1.09002 * 113.61724 * 270.87797 * 14 13 11 16 16 C 1.53006 * 113.69613 * 139.99024 * 14 13 11 17 17 N 1.46501 * 109.47210 * 87.46487 * 16 14 13 18 18 C 1.36939 * 119.99737 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00285 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99401 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00394 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99486 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47008 * 60.00066 * 22 20 18 24 24 H 1.48502 * 109.46833 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47226 * 299.99683 * 22 20 18 26 26 C 1.53777 * 87.08024 * 25.43300 * 14 13 11 27 27 H 1.07997 * 120.00268 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99589 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99600 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46733 * 174.75603 * 5 3 2 31 31 H 1.08998 * 109.46853 * 54.75409 * 5 3 2 32 32 H 1.08997 * 109.47550 * 55.25972 * 6 5 3 33 33 H 1.09004 * 109.46995 * 175.26034 * 6 5 3 34 34 H 1.09004 * 109.47726 * 295.25932 * 6 5 3 35 35 H 1.09002 * 109.47170 * 294.01982 * 7 3 2 36 36 H 1.09006 * 109.46509 * 54.01756 * 7 3 2 37 37 H 0.97004 * 120.00040 * 0.02562 * 10 8 7 38 38 H 1.09000 * 113.61140 * 203.66759 * 13 11 10 39 39 H 1.09002 * 113.61503 * 334.56555 * 13 11 10 40 40 H 1.09000 * 109.47073 * 207.46886 * 16 14 13 41 41 H 1.09000 * 109.46957 * 327.46291 * 16 14 13 42 42 H 0.96999 * 120.00000 * 0.02562 * 17 16 14 43 43 H 0.96999 * 120.00189 * 180.02562 * 21 20 18 44 44 H 1.09007 * 113.61462 * 220.02681 * 26 14 13 45 45 H 1.08990 * 113.61758 * 89.11795 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9433 1.3861 1.2492 6 6 2.0565 1.4366 2.4950 7 6 2.9431 1.3863 -1.2493 8 6 3.5829 2.7485 -1.3255 9 8 3.2729 3.6095 -0.5296 10 7 4.4996 3.0101 -2.2782 11 6 5.1220 4.3343 -2.3521 12 1 4.4992 5.1192 -1.9229 13 6 6.5764 4.3600 -1.8532 14 6 6.9923 4.0252 -3.2982 15 1 7.0406 2.9555 -3.5020 16 6 8.2393 4.7765 -3.7689 17 7 9.4360 4.0170 -3.3981 18 6 10.6779 4.4974 -3.7175 19 1 10.7753 5.4358 -4.2430 20 6 11.8118 3.7774 -3.3666 21 7 11.6931 2.6335 -2.7266 22 14 13.5060 4.4324 -3.8029 23 1 13.7067 5.7547 -3.1577 24 1 14.5424 3.4844 -3.3206 25 1 13.6158 4.5787 -5.2765 26 6 5.6741 4.6787 -3.7455 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 3.5572 2.2855 1.2035 31 1 3.5876 0.5082 1.2973 32 1 1.3832 0.5795 2.4968 33 1 2.6818 1.4094 3.3874 34 1 1.4727 2.3571 2.4884 35 1 3.7192 0.6227 -1.1974 36 1 2.3307 1.2223 -2.1360 37 1 4.7472 2.3216 -2.9151 38 1 6.9066 5.3441 -1.5207 39 1 6.8064 3.5710 -1.1372 40 1 8.2050 4.8948 -4.8519 41 1 8.2715 5.7586 -3.2970 42 1 9.3485 3.1740 -2.9265 43 1 12.4854 2.1307 -2.4812 44 1 5.1760 4.1467 -4.5561 45 1 5.7580 5.7497 -3.9293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755477244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:40 Heat of formation + Delta-G solvation = -28.003994 kcal Electronic energy + Delta-G solvation = -21537.564870 eV Core-core repulsion = 18361.827889 eV Total energy + Delta-G solvation = -3175.736981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33400 -39.74311 -37.56515 -36.30922 -34.40348 -32.83791 -32.64920 -31.16976 -28.48938 -26.62570 -25.92775 -24.93426 -23.04505 -22.69128 -21.52400 -20.49302 -20.24606 -19.05901 -18.00197 -17.03625 -16.70137 -16.36067 -15.91058 -15.85195 -15.62477 -15.44942 -15.10635 -14.88704 -14.52138 -14.35420 -13.82564 -13.69360 -13.48529 -13.32936 -13.10481 -12.88983 -12.76896 -12.65510 -12.23525 -12.10674 -12.03094 -11.92279 -11.74231 -11.63182 -11.51168 -11.33275 -11.13462 -10.85400 -10.74312 -10.18012 -9.97482 -8.98210 -7.95194 -5.23553 1.43956 1.46593 1.49865 1.55949 1.67571 2.25016 2.56061 3.37502 3.60341 3.60691 3.72283 3.82165 3.94853 3.96019 4.10908 4.21982 4.33760 4.41308 4.43614 4.57264 4.58647 4.63746 4.75362 4.81564 4.84995 4.92643 4.93857 4.98281 4.99781 5.04239 5.11153 5.16054 5.20285 5.28499 5.37604 5.42360 5.44459 5.49444 5.71395 5.80307 5.97068 6.27585 6.61078 7.31390 7.33436 8.11445 8.33973 9.28263 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.002744 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.038965 B =10202.917526 C =10675.800575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C -0.043 4.043 4 H 0.065 0.935 5 C -0.121 4.121 6 C -0.145 4.145 7 C -0.129 4.129 8 C 0.511 3.489 9 O -0.579 6.579 10 N -0.704 5.704 11 C 0.127 3.873 12 H 0.090 0.910 13 C -0.144 4.144 14 C -0.110 4.110 15 H 0.087 0.913 16 C 0.159 3.841 17 N -0.745 5.745 18 C -0.247 4.247 19 H 0.074 0.926 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.276 1.276 26 C -0.116 4.116 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.414 0.586 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.093 0.907 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.743 -4.875 2.188 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.166 4.166 3 C -0.062 4.062 4 H 0.083 0.917 5 C -0.158 4.158 6 C -0.203 4.203 7 C -0.169 4.169 8 C 0.299 3.701 9 O -0.459 6.459 10 N -0.356 5.356 11 C 0.021 3.979 12 H 0.108 0.892 13 C -0.183 4.183 14 C -0.129 4.129 15 H 0.105 0.895 16 C 0.033 3.967 17 N -0.388 5.388 18 C -0.379 4.379 19 H 0.092 0.908 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.205 1.205 24 H -0.221 1.221 25 H -0.202 1.202 26 C -0.155 4.155 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.250 0.750 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.857 -4.129 2.666 24.358 hybrid contribution 1.490 -0.205 -0.064 1.506 sum -22.367 -4.334 2.602 22.931 Atomic orbital electron populations 1.23998 0.95889 1.02337 1.00433 1.22898 0.96027 0.97539 1.00160 1.20086 0.96580 0.96117 0.93400 0.91683 1.21581 0.98138 1.01550 0.94566 1.21709 0.99745 1.01628 0.97198 1.21757 1.00910 0.93128 1.01073 1.21282 0.78456 0.90879 0.79465 1.90671 1.63847 1.49663 1.41692 1.45716 1.41628 1.14432 1.33799 1.21708 0.92592 0.85796 0.97837 0.89154 1.23455 0.96421 1.01682 0.96706 1.22721 0.94038 0.99919 0.96183 0.89509 1.20832 0.85486 0.93765 0.96619 1.42576 1.01556 1.25127 1.69507 1.19631 0.85148 1.03671 1.29485 0.90762 1.25586 1.01654 0.97723 1.01993 1.69805 1.29046 1.16408 1.46829 0.85204 0.79400 0.77109 0.78018 1.20523 1.22089 1.20216 1.23208 0.93819 1.02609 0.95825 0.89025 0.87064 0.86040 0.93239 0.91568 0.91724 0.92884 0.93717 0.86998 0.86343 0.74950 0.90048 0.93159 0.96011 0.96384 0.79539 0.94003 0.88883 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 14.32 67.77 0.97 -1.32 16 2 C -0.15 -1.94 7.69 25.64 0.20 -1.74 16 3 C -0.04 -0.74 1.79 -11.54 -0.02 -0.76 16 4 H 0.06 1.36 7.47 -2.39 -0.02 1.34 16 5 C -0.12 -2.42 5.20 30.60 0.16 -2.27 16 6 C -0.15 -2.66 9.80 71.98 0.71 -1.96 16 7 C -0.13 -1.96 5.15 29.85 0.15 -1.80 16 8 C 0.51 11.60 7.38 87.66 0.65 12.25 16 9 O -0.58 -17.93 13.93 -3.02 -0.04 -17.97 16 10 N -0.70 -14.48 5.26 -440.04 -2.32 -16.80 16 11 C 0.13 3.06 4.30 45.52 0.20 3.25 16 12 H 0.09 2.38 7.50 -2.39 -0.02 2.36 16 13 C -0.14 -4.32 7.45 31.21 0.23 -4.08 16 14 C -0.11 -3.29 3.64 -10.18 -0.04 -3.32 16 15 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 16 C 0.16 6.27 6.10 86.38 0.53 6.79 16 17 N -0.75 -38.31 5.60 -343.44 -1.92 -40.23 16 18 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 19 H 0.07 4.04 7.83 -2.92 -0.02 4.01 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 21 N -0.97 -59.96 13.06 21.65 0.28 -59.67 16 22 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 C -0.12 -2.52 7.38 31.12 0.23 -2.29 16 27 H 0.09 1.18 7.83 -2.91 -0.02 1.15 16 28 H 0.11 1.02 8.06 -2.91 -0.02 0.99 16 29 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.05 1.29 6.19 -2.39 -0.01 1.28 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.02 7.24 -2.39 -0.02 1.00 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.41 6.43 8.70 -92.70 -0.81 5.62 16 38 H 0.08 2.55 7.91 -2.39 -0.02 2.53 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.02 0.73 7.85 -2.39 -0.02 0.71 16 42 H 0.37 20.36 7.67 -92.71 -0.71 19.65 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 Total: -1.00 -70.37 366.42 2.73 -67.63 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.56 Total: 33.02 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 5.27 Total: -14.50 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -3.96 Total: -116.71 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.04 Total: -17.97 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -70.37 2.73 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755477244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.628 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds