Wall clock time and date at job start Tue Mar 31 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00207 * 2 1 4 4 H 1.09000 * 109.47040 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.47280 * 240.00301 * 3 2 1 6 6 C 1.52996 * 109.46947 * 64.99955 * 5 3 2 7 7 C 1.53001 * 109.47255 * 120.00283 * 3 2 1 8 8 C 1.50694 * 109.47168 * 185.00084 * 7 3 2 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.09002 * 112.85200 * 336.19079 * 11 10 8 13 13 C 1.53786 * 113.61753 * 107.50245 * 11 10 8 14 14 C 1.53781 * 87.07959 * 89.11345 * 13 11 10 15 15 H 1.09006 * 113.61519 * 270.88270 * 14 13 11 16 16 C 1.52998 * 113.68888 * 139.99430 * 14 13 11 17 17 N 1.46496 * 109.47107 * 87.46356 * 16 14 13 18 18 C 1.36943 * 120.00379 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99165 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00552 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99964 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46914 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47348 * 120.00166 * 22 20 18 25 25 H 1.48499 * 109.47207 * 240.00566 * 22 20 18 26 26 C 1.53779 * 87.08411 * 25.43382 * 14 13 11 27 27 H 1.07996 * 120.00341 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99654 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00230 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46988 * 184.99947 * 5 3 2 31 31 H 1.08997 * 109.46811 * 305.00125 * 5 3 2 32 32 H 1.08997 * 109.47227 * 60.00424 * 6 5 3 33 33 H 1.09002 * 109.47156 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47270 * 299.99819 * 6 5 3 35 35 H 1.08998 * 109.46837 * 65.00105 * 7 3 2 36 36 H 1.09002 * 109.46926 * 304.99909 * 7 3 2 37 37 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 38 38 H 1.09001 * 113.61511 * 203.66141 * 13 11 10 39 39 H 1.08999 * 113.61048 * 334.56152 * 13 11 10 40 40 H 1.08998 * 109.47237 * 207.46265 * 16 14 13 41 41 H 1.08996 * 109.47395 * 327.46146 * 16 14 13 42 42 H 0.97006 * 120.00113 * 0.02562 * 17 16 14 43 43 H 0.97001 * 119.99974 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.61795 * 220.01939 * 26 14 13 45 45 H 1.09007 * 113.68946 * 89.12453 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0564 1.4308 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 3.6021 2.7399 1.3127 9 8 3.3894 3.5592 0.4441 10 7 4.4277 3.0403 2.3348 11 6 5.0729 4.3542 2.3933 12 1 5.1572 4.8283 1.4154 13 6 4.4946 5.2767 3.4794 14 6 5.5303 4.6662 4.4384 15 1 5.1752 3.7738 4.9540 16 6 6.1673 5.6854 5.3851 17 7 5.3407 5.8184 6.5873 18 6 5.7149 6.6801 7.5837 19 1 6.6192 7.2619 7.4830 20 6 4.9315 6.8065 8.7225 21 7 3.8291 6.0978 8.8450 22 14 5.4415 7.9824 10.0813 23 1 6.7096 8.6561 9.7027 24 1 4.3797 9.0017 10.2784 25 1 5.6406 7.2247 11.3428 26 6 6.3843 4.3613 3.1965 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5540 2.2878 -1.2056 31 1 3.5905 0.5105 -1.2953 32 1 1.4090 2.3065 -2.4494 33 1 2.6830 1.4881 -3.3854 34 1 1.4455 0.5292 -2.5390 35 1 3.7085 0.6112 1.2054 36 1 2.3280 1.2395 2.1370 37 1 4.5980 2.3849 3.0293 38 1 4.6539 6.3368 3.2821 39 1 3.4633 5.0449 3.7454 40 1 7.1647 5.3470 5.6656 41 1 6.2387 6.6511 4.8846 42 1 4.5287 5.2955 6.6779 43 1 3.2818 6.1859 9.6410 44 1 6.8786 3.3905 3.2340 45 1 7.0609 5.1703 2.9208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755477245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:45 Heat of formation + Delta-G solvation = -7.237725 kcal Electronic energy + Delta-G solvation = -21480.838335 eV Core-core repulsion = 18306.001847 eV Total energy + Delta-G solvation = -3174.836488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34243 -38.69745 -36.74817 -34.51663 -33.15931 -32.00257 -31.01915 -30.28446 -26.87435 -25.49053 -24.93015 -23.26030 -22.08857 -21.40653 -20.66512 -19.83402 -19.04643 -17.19916 -16.94632 -15.97326 -15.55934 -15.05604 -15.00281 -14.81068 -14.42048 -14.14765 -13.83084 -13.48426 -13.40278 -13.08283 -12.88184 -12.67887 -12.32030 -12.16795 -12.05212 -11.63586 -11.39852 -11.34205 -11.04113 -10.92784 -10.84179 -10.79193 -10.45253 -10.30849 -10.06906 -9.82989 -9.78381 -9.61386 -9.53578 -8.96532 -8.83502 -6.89226 -5.75318 -3.03415 2.01982 2.58552 3.13094 3.43849 3.49386 3.51707 4.46450 4.50402 4.58885 4.69287 4.79866 4.84676 4.96359 5.00952 5.11524 5.12737 5.16043 5.21821 5.31768 5.51361 5.59163 5.60695 5.71853 5.75777 5.78412 5.88473 5.92415 5.94761 6.03127 6.11873 6.14108 6.20076 6.26442 6.33501 6.39564 6.43946 6.55273 6.66355 6.79747 6.95198 7.48056 7.71614 8.20118 8.44047 9.55000 10.14313 10.48672 11.47792 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029983 B = 0.002662 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.638230 B =10517.234525 C =11123.100376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.122 4.122 6 C -0.148 4.148 7 C -0.136 4.136 8 C 0.515 3.485 9 O -0.539 6.539 10 N -0.711 5.711 11 C 0.115 3.885 12 H 0.098 0.902 13 C -0.139 4.139 14 C -0.113 4.113 15 H 0.087 0.913 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.138 4.138 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.068 0.932 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 -13.595 -19.815 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.164 4.164 3 C -0.065 4.065 4 H 0.101 0.899 5 C -0.159 4.159 6 C -0.205 4.205 7 C -0.176 4.176 8 C 0.301 3.699 9 O -0.416 6.416 10 N -0.361 5.361 11 C 0.010 3.990 12 H 0.116 0.884 13 C -0.177 4.177 14 C -0.132 4.132 15 H 0.105 0.895 16 C 0.035 3.965 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.177 4.177 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.627 -12.867 -20.356 24.136 hybrid contribution 0.002 0.084 1.387 1.390 sum -1.626 -12.783 -18.968 22.931 Atomic orbital electron populations 1.23872 0.95971 1.01845 1.01133 1.22920 0.95927 0.97970 0.99599 1.20158 0.96915 0.95744 0.93637 0.89927 1.21657 0.98054 1.02779 0.93399 1.21726 0.99788 1.01592 0.97400 1.21711 1.00279 0.95001 1.00568 1.20666 0.78625 0.89470 0.81092 1.90668 1.61805 1.50548 1.38551 1.45751 1.47354 1.16513 1.26523 1.21928 0.93655 0.83866 0.99545 0.88393 1.23404 0.99545 0.99433 0.95334 1.22751 0.96329 0.99630 0.94459 0.89466 1.20637 0.93691 0.94671 0.87546 1.42362 1.27680 1.50765 1.16804 1.19294 1.05710 1.15806 0.96050 0.91187 1.24743 0.97407 1.00421 0.98624 1.69672 1.15553 1.44163 1.28933 0.86118 0.77560 0.80358 0.82181 1.20573 1.21886 1.21894 1.23312 0.95860 1.02293 0.96230 0.88565 0.88545 0.87447 0.89764 0.92685 0.92778 0.93124 0.93003 0.88813 0.88626 0.76443 0.89214 0.91382 0.96427 0.96224 0.78350 0.93616 0.91333 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 14.32 29.02 0.42 -1.01 16 2 C -0.15 -1.11 7.75 -36.02 -0.28 -1.39 16 3 C -0.05 -0.41 1.80 -91.77 -0.17 -0.58 16 4 H 0.08 0.89 7.60 -51.93 -0.39 0.50 16 5 C -0.12 -1.13 5.18 -26.73 -0.14 -1.27 16 6 C -0.15 -1.28 9.73 37.16 0.36 -0.92 16 7 C -0.14 -1.14 5.16 -27.89 -0.14 -1.29 16 8 C 0.51 6.01 7.51 -10.98 -0.08 5.92 16 9 O -0.54 -8.13 13.59 5.56 0.08 -8.06 16 10 N -0.71 -7.79 5.26 -53.02 -0.28 -8.07 16 11 C 0.12 1.45 4.32 -67.12 -0.29 1.16 16 12 H 0.10 1.31 7.47 -51.93 -0.39 0.92 16 13 C -0.14 -2.07 7.43 -25.92 -0.19 -2.27 16 14 C -0.11 -1.74 3.63 -89.81 -0.33 -2.07 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 16 C 0.16 3.23 6.10 -4.05 -0.02 3.21 16 17 N -0.73 -18.70 5.60 -59.91 -0.34 -19.04 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 22 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 C -0.14 -1.66 7.39 -25.92 -0.19 -1.85 16 27 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.10 0.74 7.83 -52.49 -0.41 0.33 16 29 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.08 0.98 5.88 -51.93 -0.31 0.67 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.41 7.38 -51.93 -0.38 0.03 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.40 3.57 8.70 -40.82 -0.36 3.22 16 38 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 42 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -32.41 366.10 -8.61 -41.02 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.99 Total: 8.64 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.30 Total: -9.80 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.11 Total: -54.91 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.41 -8.61 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755477245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.781 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds