Wall clock time and date at job start Tue Mar 31 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00207 * 2 1 4 4 H 1.09000 * 109.47040 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.47280 * 240.00301 * 3 2 1 6 6 C 1.52996 * 109.46947 * 64.99955 * 5 3 2 7 7 C 1.53001 * 109.47255 * 120.00283 * 3 2 1 8 8 C 1.50694 * 109.47168 * 185.00084 * 7 3 2 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.09002 * 112.85200 * 336.19079 * 11 10 8 13 13 C 1.53786 * 113.61753 * 107.50245 * 11 10 8 14 14 C 1.53781 * 87.07959 * 89.11345 * 13 11 10 15 15 H 1.09006 * 113.61519 * 270.88270 * 14 13 11 16 16 C 1.52998 * 113.68888 * 139.99430 * 14 13 11 17 17 N 1.46496 * 109.47107 * 87.46356 * 16 14 13 18 18 C 1.36943 * 120.00379 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99165 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00552 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99964 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46914 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47348 * 120.00166 * 22 20 18 25 25 H 1.48499 * 109.47207 * 240.00566 * 22 20 18 26 26 C 1.53779 * 87.08411 * 25.43382 * 14 13 11 27 27 H 1.07996 * 120.00341 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99654 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00230 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46988 * 184.99947 * 5 3 2 31 31 H 1.08997 * 109.46811 * 305.00125 * 5 3 2 32 32 H 1.08997 * 109.47227 * 60.00424 * 6 5 3 33 33 H 1.09002 * 109.47156 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47270 * 299.99819 * 6 5 3 35 35 H 1.08998 * 109.46837 * 65.00105 * 7 3 2 36 36 H 1.09002 * 109.46926 * 304.99909 * 7 3 2 37 37 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 38 38 H 1.09001 * 113.61511 * 203.66141 * 13 11 10 39 39 H 1.08999 * 113.61048 * 334.56152 * 13 11 10 40 40 H 1.08998 * 109.47237 * 207.46265 * 16 14 13 41 41 H 1.08996 * 109.47395 * 327.46146 * 16 14 13 42 42 H 0.97006 * 120.00113 * 0.02562 * 17 16 14 43 43 H 0.97001 * 119.99974 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.61795 * 220.01939 * 26 14 13 45 45 H 1.09007 * 113.68946 * 89.12453 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0564 1.4308 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 3.6021 2.7399 1.3127 9 8 3.3894 3.5592 0.4441 10 7 4.4277 3.0403 2.3348 11 6 5.0729 4.3542 2.3933 12 1 5.1572 4.8283 1.4154 13 6 4.4946 5.2767 3.4794 14 6 5.5303 4.6662 4.4384 15 1 5.1752 3.7738 4.9540 16 6 6.1673 5.6854 5.3851 17 7 5.3407 5.8184 6.5873 18 6 5.7149 6.6801 7.5837 19 1 6.6192 7.2619 7.4830 20 6 4.9315 6.8065 8.7225 21 7 3.8291 6.0978 8.8450 22 14 5.4415 7.9824 10.0813 23 1 6.7096 8.6561 9.7027 24 1 4.3797 9.0017 10.2784 25 1 5.6406 7.2247 11.3428 26 6 6.3843 4.3613 3.1965 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5540 2.2878 -1.2056 31 1 3.5905 0.5105 -1.2953 32 1 1.4090 2.3065 -2.4494 33 1 2.6830 1.4881 -3.3854 34 1 1.4455 0.5292 -2.5390 35 1 3.7085 0.6112 1.2054 36 1 2.3280 1.2395 2.1370 37 1 4.5980 2.3849 3.0293 38 1 4.6539 6.3368 3.2821 39 1 3.4633 5.0449 3.7454 40 1 7.1647 5.3470 5.6656 41 1 6.2387 6.6511 4.8846 42 1 4.5287 5.2955 6.6779 43 1 3.2818 6.1859 9.6410 44 1 6.8786 3.3905 3.2340 45 1 7.0609 5.1703 2.9208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755477245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:44 Heat of formation + Delta-G solvation = -27.405566 kcal Electronic energy + Delta-G solvation = -21481.712878 eV Core-core repulsion = 18306.001847 eV Total energy + Delta-G solvation = -3175.711031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33994 -39.76143 -37.54256 -36.31224 -34.40888 -32.84028 -32.63529 -31.16345 -28.49163 -26.62197 -25.92721 -24.93106 -23.02315 -22.68522 -21.53964 -20.50087 -20.25162 -19.06264 -18.00061 -17.01193 -16.69918 -16.40043 -15.96737 -15.74377 -15.58109 -15.52365 -15.10037 -14.86197 -14.52882 -14.31291 -13.81459 -13.74687 -13.46263 -13.33206 -13.11170 -12.90724 -12.77684 -12.69689 -12.13163 -12.07660 -12.01943 -11.93618 -11.74356 -11.62275 -11.51460 -11.33947 -11.14016 -10.87028 -10.68714 -10.18155 -9.96105 -8.98427 -7.95858 -5.24136 1.43427 1.46565 1.47502 1.57612 1.67668 2.25081 2.55542 3.37288 3.60507 3.61382 3.72702 3.82601 3.94408 3.97118 4.12842 4.23216 4.33483 4.41420 4.44700 4.56619 4.59427 4.65226 4.76302 4.82957 4.85162 4.92919 4.94633 4.97694 5.00292 5.06539 5.12331 5.16172 5.21884 5.28788 5.38119 5.45213 5.48102 5.50160 5.71750 5.79364 5.97267 6.27340 6.61299 7.31762 7.33055 8.10973 8.33321 9.28025 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029983 B = 0.002662 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.638230 B =10517.234525 C =11123.100376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.056 0.944 5 C -0.119 4.119 6 C -0.146 4.146 7 C -0.129 4.129 8 C 0.510 3.490 9 O -0.577 6.577 10 N -0.704 5.704 11 C 0.127 3.873 12 H 0.092 0.908 13 C -0.144 4.144 14 C -0.110 4.110 15 H 0.087 0.913 16 C 0.159 3.841 17 N -0.746 5.746 18 C -0.244 4.244 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.291 1.291 26 C -0.116 4.116 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.414 0.586 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.092 0.908 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -15.040 -20.232 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.163 4.163 3 C -0.064 4.064 4 H 0.075 0.925 5 C -0.157 4.157 6 C -0.203 4.203 7 C -0.168 4.168 8 C 0.299 3.701 9 O -0.457 6.457 10 N -0.356 5.356 11 C 0.021 3.979 12 H 0.110 0.890 13 C -0.183 4.183 14 C -0.129 4.129 15 H 0.105 0.895 16 C 0.033 3.967 17 N -0.388 5.388 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.221 1.221 25 H -0.219 1.219 26 C -0.155 4.155 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.145 0.855 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.250 0.750 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.400 -14.326 -20.788 25.250 hybrid contribution -0.372 0.560 1.459 1.606 sum -0.771 -13.766 -19.329 23.743 Atomic orbital electron populations 1.23993 0.96165 1.02171 1.00882 1.22931 0.95889 0.97739 0.99772 1.20102 0.96602 0.95794 0.93891 0.92547 1.21608 0.98075 1.02208 0.93780 1.21710 0.99718 1.01407 0.97498 1.21745 1.00827 0.93553 1.00714 1.21284 0.78120 0.90312 0.80386 1.90661 1.63025 1.52002 1.40022 1.45713 1.46987 1.16079 1.26788 1.21712 0.93688 0.84115 0.98418 0.89022 1.23416 0.98526 0.99693 0.96665 1.22675 0.97339 0.98358 0.94527 0.89524 1.20833 0.93425 0.95974 0.86472 1.42598 1.27965 1.50172 1.18057 1.19700 1.05545 1.15677 0.96691 0.90724 1.25584 0.97736 1.02549 1.01192 1.69824 1.16795 1.46009 1.29510 0.85066 0.77529 0.78120 0.79014 1.19032 1.22134 1.21856 1.23216 0.95364 1.03927 0.92967 0.87059 0.89508 0.85527 0.92286 0.91025 0.94147 0.92581 0.92033 0.85943 0.87420 0.74967 0.90013 0.93205 0.95988 0.96352 0.79548 0.94030 0.88904 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.63 14.32 67.78 0.97 -1.66 16 2 C -0.15 -1.92 7.75 25.65 0.20 -1.72 16 3 C -0.04 -0.77 1.80 -11.54 -0.02 -0.79 16 4 H 0.06 1.25 7.60 -2.39 -0.02 1.23 16 5 C -0.12 -2.12 5.18 30.60 0.16 -1.96 16 6 C -0.15 -2.45 9.73 71.98 0.70 -1.75 16 7 C -0.13 -1.93 5.16 29.85 0.15 -1.78 16 8 C 0.51 11.47 7.51 87.65 0.66 12.12 16 9 O -0.58 -17.64 13.59 -3.04 -0.04 -17.68 16 10 N -0.70 -14.36 5.26 -440.03 -2.32 -16.68 16 11 C 0.13 3.03 4.32 45.52 0.20 3.23 16 12 H 0.09 2.39 7.47 -2.39 -0.02 2.37 16 13 C -0.14 -4.31 7.43 31.12 0.23 -4.08 16 14 C -0.11 -3.29 3.63 -10.27 -0.04 -3.33 16 15 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 16 C 0.16 6.25 6.10 86.38 0.53 6.78 16 17 N -0.75 -38.28 5.60 -343.47 -1.92 -40.20 16 18 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 22 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 C -0.12 -2.51 7.39 31.12 0.23 -2.28 16 27 H 0.11 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.09 1.32 7.83 -2.91 -0.02 1.30 16 29 H 0.13 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.90 7.38 -2.39 -0.02 0.88 16 35 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.41 6.40 8.70 -92.71 -0.81 5.59 16 38 H 0.08 2.55 7.90 -2.39 -0.02 2.53 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.02 0.74 7.85 -2.39 -0.02 0.72 16 42 H 0.37 20.35 7.67 -92.70 -0.71 19.64 16 43 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.10 2.09 8.10 -2.38 -0.02 2.08 16 Total: -1.00 -70.44 366.10 2.74 -67.69 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -0.56 Total: 32.35 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.27 Total: -14.33 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -3.96 Total: -116.63 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.04 Total: -17.68 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -70.44 2.74 -67.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755477245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.287 kcal (2) G-P(sol) polarization free energy of solvation -70.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds