Wall clock time and date at job start Tue Mar 31 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.53003 * 109.46948 * 119.99630 * 2 1 3 5 5 H 1.08996 * 115.56608 * 211.53011 * 4 2 1 6 6 C 1.53074 * 117.51475 * 357.23078 * 4 2 1 7 7 C 1.52996 * 59.98454 * 107.47417 * 6 4 2 8 8 H 1.09005 * 117.49755 * 107.49886 * 7 6 4 9 9 C 1.50700 * 117.50413 * 252.49720 * 7 6 4 10 10 O 1.21279 * 119.99586 * 104.14256 * 9 7 6 11 11 N 1.34772 * 119.99865 * 284.15143 * 9 7 6 12 12 C 1.46508 * 119.99624 * 179.97438 * 11 9 7 13 13 H 1.08994 * 112.85237 * 23.80066 * 12 11 9 14 14 C 1.53785 * 113.61100 * 154.99823 * 12 11 9 15 15 C 1.53774 * 87.08119 * 89.20035 * 14 12 11 16 16 H 1.09001 * 113.61526 * 270.79651 * 15 14 12 17 17 C 1.53001 * 113.61666 * 139.98195 * 15 14 12 18 18 N 1.46494 * 109.47390 * 174.99790 * 17 15 14 19 19 C 1.36940 * 120.00139 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99708 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99932 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99772 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47392 * 60.00478 * 23 21 19 25 25 H 1.48501 * 109.47306 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47302 * 300.00144 * 23 21 19 27 27 C 1.53777 * 113.68795 * 252.53055 * 12 11 9 28 28 H 1.09002 * 109.47239 * 55.55703 * 1 2 3 29 29 H 1.09001 * 109.47391 * 175.55348 * 1 2 3 30 30 H 1.09000 * 109.47806 * 295.55558 * 1 2 3 31 31 H 1.08996 * 109.47279 * 239.99484 * 2 1 3 32 32 H 1.09003 * 109.46887 * 175.20892 * 3 2 1 33 33 H 1.08998 * 109.46785 * 295.20267 * 3 2 1 34 34 H 1.08997 * 109.47322 * 55.21166 * 3 2 1 35 35 H 1.09007 * 117.51138 * 359.97438 * 6 4 2 36 36 H 1.08995 * 117.51697 * 214.95600 * 6 4 2 37 37 H 0.96994 * 120.00749 * 359.97438 * 11 9 7 38 38 H 1.09000 * 113.61410 * 334.64826 * 14 12 11 39 39 H 1.09007 * 113.60750 * 203.75126 * 14 12 11 40 40 H 1.09003 * 109.47238 * 54.99556 * 17 15 14 41 41 H 1.09004 * 109.46912 * 295.00074 * 17 15 14 42 42 H 0.97005 * 119.99995 * 359.97438 * 18 17 15 43 43 H 0.96999 * 119.99651 * 179.97438 * 22 21 19 44 44 H 1.09004 * 113.61100 * 156.32619 * 27 12 11 45 45 H 1.09002 * 113.61691 * 25.42245 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.9869 -0.3579 1.6485 6 6 0.9971 -1.2237 2.2510 7 6 1.7516 -2.2191 1.3674 8 1 2.5092 -2.8414 1.8439 9 6 0.9872 -2.8713 0.2444 10 8 1.1599 -2.5058 -0.8991 11 7 0.1115 -3.8606 0.5107 12 6 -0.6320 -4.4943 -0.5811 13 1 -0.1307 -4.4014 -1.5445 14 6 -1.0936 -5.9262 -0.2623 15 6 -2.3741 -5.3007 0.3152 16 1 -2.2990 -5.0505 1.3735 17 6 -3.6446 -6.0841 -0.0212 18 7 -4.7876 -5.4804 0.6681 19 6 -6.0392 -6.0149 0.5160 20 1 -6.1835 -6.8816 -0.1118 21 6 -7.1221 -5.4431 1.1696 22 7 -6.9460 -4.3871 1.9352 23 14 -8.8293 -6.1726 0.9626 24 1 -8.8269 -7.5801 1.4360 25 1 -9.8043 -5.3841 1.7581 26 1 -9.2139 -6.1332 -0.4711 27 6 -2.1199 -4.1077 -0.6212 28 1 -0.3634 0.5812 -0.8475 29 1 -0.3634 -1.0246 -0.0797 30 1 -0.3635 0.4433 0.9271 31 1 1.8933 -0.5139 -0.8899 32 1 3.1266 1.4437 0.0858 33 1 1.7484 1.9309 -0.9298 34 1 1.6083 1.9806 0.8440 35 1 -0.0523 -1.0401 2.0201 36 1 1.2582 -1.1910 3.3087 37 1 -0.0264 -4.1532 1.4251 38 1 -0.4774 -6.4275 0.4841 39 1 -1.2670 -6.5364 -1.1487 40 1 -3.5300 -7.1186 0.3026 41 1 -3.8137 -6.0571 -1.0977 42 1 -4.6578 -4.7021 1.2324 43 1 -7.7029 -3.9874 2.3916 44 1 -2.5740 -4.2209 -1.6057 45 1 -2.3324 -3.1411 -0.1645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755480405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:44 Heat of formation + Delta-G solvation = 7.824383 kcal Electronic energy + Delta-G solvation = -22152.146270 eV Core-core repulsion = 18977.962925 eV Total energy + Delta-G solvation = -3174.183346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63711 -39.02757 -37.10064 -34.51434 -33.52502 -32.72555 -30.80362 -27.30636 -26.98390 -25.48662 -24.73104 -23.65435 -23.10128 -21.39875 -20.44870 -19.36400 -18.97595 -17.27323 -16.96867 -16.00454 -15.86151 -15.13237 -14.87624 -14.64789 -14.32571 -14.04187 -13.71587 -13.31922 -13.20925 -12.86748 -12.73093 -12.51502 -12.35645 -12.12924 -11.82786 -11.64037 -11.47525 -11.11069 -11.00278 -10.95003 -10.80454 -10.54992 -10.43142 -10.33853 -10.16777 -10.09008 -9.81972 -9.59778 -9.51878 -8.95821 -8.82139 -6.88852 -5.74569 -3.02690 2.54865 3.03707 3.45101 3.49272 3.50400 3.52115 4.36221 4.56206 4.59466 4.64076 4.72032 4.84795 4.86973 4.99947 5.10543 5.15538 5.15973 5.23594 5.48187 5.52509 5.59599 5.61632 5.69682 5.76705 5.83521 5.85520 5.89026 5.91882 5.95068 6.03602 6.10834 6.12893 6.23414 6.31025 6.33677 6.42748 6.44697 6.67568 6.80283 6.95724 7.50918 7.71114 8.22824 8.44800 9.55627 10.14946 10.49423 11.48389 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.003262 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.612363 B = 8582.871449 C = 9223.121718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.143 4.143 4 C -0.111 4.111 5 H 0.110 0.890 6 C -0.165 4.165 7 C -0.191 4.191 8 H 0.127 0.873 9 C 0.547 3.453 10 O -0.533 6.533 11 N -0.706 5.706 12 C 0.115 3.885 13 H 0.098 0.902 14 C -0.138 4.138 15 C -0.113 4.113 16 H 0.087 0.913 17 C 0.162 3.838 18 N -0.732 5.732 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.138 4.138 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.089 0.911 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.715 6.173 -0.575 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.201 4.201 4 C -0.130 4.130 5 H 0.128 0.872 6 C -0.202 4.202 7 C -0.212 4.212 8 H 0.145 0.855 9 C 0.334 3.666 10 O -0.410 6.410 11 N -0.357 5.357 12 C 0.010 3.990 13 H 0.116 0.884 14 C -0.177 4.177 15 C -0.132 4.132 16 H 0.105 0.895 17 C 0.035 3.965 18 N -0.376 5.376 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.176 4.176 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.694 6.331 -1.462 21.690 hybrid contribution -1.083 -0.399 0.725 1.364 sum 19.610 5.931 -0.737 20.501 Atomic orbital electron populations 1.21995 0.95172 1.02185 1.01230 1.20775 0.95835 0.95208 0.97307 1.21831 1.00538 0.96105 1.01608 1.22475 0.99950 0.92327 0.98242 0.87209 1.23337 0.99079 1.01048 0.96767 1.22250 1.04113 0.94127 1.00676 0.85492 1.19613 0.78773 0.79004 0.89218 1.90661 1.65792 1.62320 1.22239 1.45712 1.42034 1.37287 1.10640 1.21932 0.92527 0.93534 0.90981 0.88393 1.23311 0.97265 0.95250 1.01868 1.22751 0.94873 0.96297 0.99246 0.89451 1.20636 0.85981 0.94625 0.95274 1.42341 1.02980 1.35539 1.56710 1.19202 0.84972 1.09395 1.23477 0.91312 1.24732 0.97983 0.98213 1.00132 1.69649 1.30281 1.23578 1.34824 0.86269 0.84357 0.78179 0.77398 1.21303 1.21695 1.21295 1.23400 0.94329 0.99064 1.00857 0.92804 0.92326 0.92847 0.88569 0.92926 0.92725 0.92890 0.87358 0.88041 0.76372 0.91308 0.88792 0.96455 0.96252 0.78343 0.93520 0.89210 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 7.49 37.15 0.28 -1.45 16 2 C -0.07 -0.77 2.43 -90.62 -0.22 -0.99 16 3 C -0.14 -1.24 9.15 37.16 0.34 -0.90 16 4 C -0.11 -1.02 5.73 -90.58 -0.52 -1.54 16 5 H 0.11 0.83 8.07 -51.93 -0.42 0.41 16 6 C -0.17 -1.42 9.26 -26.70 -0.25 -1.67 16 7 C -0.19 -1.79 6.16 -91.77 -0.56 -2.35 16 8 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 9 C 0.55 6.69 5.56 -10.99 -0.06 6.63 16 10 O -0.53 -8.18 13.03 5.56 0.07 -8.11 16 11 N -0.71 -8.01 5.27 -53.02 -0.28 -8.29 16 12 C 0.12 1.46 4.32 -67.11 -0.29 1.17 16 13 H 0.10 1.32 7.46 -51.93 -0.39 0.94 16 14 C -0.14 -1.68 7.39 -25.92 -0.19 -1.87 16 15 C -0.11 -1.75 3.63 -89.81 -0.33 -2.07 16 16 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 17 C 0.16 3.24 6.10 -4.04 -0.02 3.22 16 18 N -0.73 -18.69 5.60 -59.91 -0.34 -19.02 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C -0.14 -2.06 7.43 -25.92 -0.19 -2.25 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.79 5.21 -51.93 -0.27 0.52 16 30 H 0.05 0.57 6.96 -51.93 -0.36 0.20 16 31 H 0.10 1.24 6.39 -51.93 -0.33 0.90 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 1.07 5.81 -51.92 -0.30 0.76 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 3.86 8.70 -40.82 -0.36 3.51 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.09 8.10 -51.92 -0.42 0.67 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 42 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -31.99 355.65 -9.50 -41.49 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.75 Total: 10.29 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.27 Total: -11.54 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.11 Total: -55.06 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.99 -9.50 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755480405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.310 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds