Wall clock time and date at job start Tue Mar 31 2020 02:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.53003 * 109.46948 * 119.99630 * 2 1 3 5 5 H 1.08996 * 115.56608 * 211.53011 * 4 2 1 6 6 C 1.53074 * 117.51475 * 357.23078 * 4 2 1 7 7 C 1.52996 * 59.98454 * 107.47417 * 6 4 2 8 8 H 1.09005 * 117.49755 * 107.49886 * 7 6 4 9 9 C 1.50700 * 117.50413 * 252.49720 * 7 6 4 10 10 O 1.21279 * 119.99586 * 104.14256 * 9 7 6 11 11 N 1.34772 * 119.99865 * 284.15143 * 9 7 6 12 12 C 1.46508 * 119.99624 * 179.97438 * 11 9 7 13 13 H 1.08994 * 112.85237 * 23.80066 * 12 11 9 14 14 C 1.53785 * 113.61100 * 154.99823 * 12 11 9 15 15 C 1.53774 * 87.08119 * 89.20035 * 14 12 11 16 16 H 1.09001 * 113.61526 * 270.79651 * 15 14 12 17 17 C 1.53001 * 113.61666 * 139.98195 * 15 14 12 18 18 N 1.46494 * 109.47390 * 174.99790 * 17 15 14 19 19 C 1.36940 * 120.00139 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99708 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99932 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99772 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47392 * 60.00478 * 23 21 19 25 25 H 1.48501 * 109.47306 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47302 * 300.00144 * 23 21 19 27 27 C 1.53777 * 113.68795 * 252.53055 * 12 11 9 28 28 H 1.09002 * 109.47239 * 55.55703 * 1 2 3 29 29 H 1.09001 * 109.47391 * 175.55348 * 1 2 3 30 30 H 1.09000 * 109.47806 * 295.55558 * 1 2 3 31 31 H 1.08996 * 109.47279 * 239.99484 * 2 1 3 32 32 H 1.09003 * 109.46887 * 175.20892 * 3 2 1 33 33 H 1.08998 * 109.46785 * 295.20267 * 3 2 1 34 34 H 1.08997 * 109.47322 * 55.21166 * 3 2 1 35 35 H 1.09007 * 117.51138 * 359.97438 * 6 4 2 36 36 H 1.08995 * 117.51697 * 214.95600 * 6 4 2 37 37 H 0.96994 * 120.00749 * 359.97438 * 11 9 7 38 38 H 1.09000 * 113.61410 * 334.64826 * 14 12 11 39 39 H 1.09007 * 113.60750 * 203.75126 * 14 12 11 40 40 H 1.09003 * 109.47238 * 54.99556 * 17 15 14 41 41 H 1.09004 * 109.46912 * 295.00074 * 17 15 14 42 42 H 0.97005 * 119.99995 * 359.97438 * 18 17 15 43 43 H 0.96999 * 119.99651 * 179.97438 * 22 21 19 44 44 H 1.09004 * 113.61100 * 156.32619 * 27 12 11 45 45 H 1.09002 * 113.61691 * 25.42245 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.9869 -0.3579 1.6485 6 6 0.9971 -1.2237 2.2510 7 6 1.7516 -2.2191 1.3674 8 1 2.5092 -2.8414 1.8439 9 6 0.9872 -2.8713 0.2444 10 8 1.1599 -2.5058 -0.8991 11 7 0.1115 -3.8606 0.5107 12 6 -0.6320 -4.4943 -0.5811 13 1 -0.1307 -4.4014 -1.5445 14 6 -1.0936 -5.9262 -0.2623 15 6 -2.3741 -5.3007 0.3152 16 1 -2.2990 -5.0505 1.3735 17 6 -3.6446 -6.0841 -0.0212 18 7 -4.7876 -5.4804 0.6681 19 6 -6.0392 -6.0149 0.5160 20 1 -6.1835 -6.8816 -0.1118 21 6 -7.1221 -5.4431 1.1696 22 7 -6.9460 -4.3871 1.9352 23 14 -8.8293 -6.1726 0.9626 24 1 -8.8269 -7.5801 1.4360 25 1 -9.8043 -5.3841 1.7581 26 1 -9.2139 -6.1332 -0.4711 27 6 -2.1199 -4.1077 -0.6212 28 1 -0.3634 0.5812 -0.8475 29 1 -0.3634 -1.0246 -0.0797 30 1 -0.3635 0.4433 0.9271 31 1 1.8933 -0.5139 -0.8899 32 1 3.1266 1.4437 0.0858 33 1 1.7484 1.9309 -0.9298 34 1 1.6083 1.9806 0.8440 35 1 -0.0523 -1.0401 2.0201 36 1 1.2582 -1.1910 3.3087 37 1 -0.0264 -4.1532 1.4251 38 1 -0.4774 -6.4275 0.4841 39 1 -1.2670 -6.5364 -1.1487 40 1 -3.5300 -7.1186 0.3026 41 1 -3.8137 -6.0571 -1.0977 42 1 -4.6578 -4.7021 1.2324 43 1 -7.7029 -3.9874 2.3916 44 1 -2.5740 -4.2209 -1.6057 45 1 -2.3324 -3.1411 -0.1645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755480405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:43 Heat of formation + Delta-G solvation = -12.057141 kcal Electronic energy + Delta-G solvation = -22153.008398 eV Core-core repulsion = 18977.962925 eV Total energy + Delta-G solvation = -3175.045473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59449 -40.09632 -38.05970 -36.31738 -34.58287 -33.79768 -32.69356 -28.61640 -28.14495 -26.63464 -25.94373 -24.73956 -24.37149 -22.87055 -21.35136 -20.36302 -20.02908 -19.06226 -18.08939 -17.02703 -16.79777 -16.63460 -16.08858 -15.79782 -15.68184 -15.28129 -15.07111 -14.90108 -14.31437 -14.16493 -13.73301 -13.64948 -13.39316 -13.23384 -13.10748 -12.89369 -12.66956 -12.61506 -12.31710 -12.22646 -11.95772 -11.90059 -11.79207 -11.67417 -11.34845 -11.26419 -11.14438 -10.93593 -10.85505 -10.45701 -9.98196 -8.98362 -7.95224 -5.23668 1.46465 1.49658 1.55764 1.61399 2.14153 2.55919 2.78392 3.37489 3.58118 3.59111 3.63283 3.83366 3.89855 3.93622 3.97654 4.08312 4.24458 4.31033 4.33709 4.46621 4.57237 4.75652 4.76319 4.78545 4.83554 4.88075 4.89731 4.91854 4.96314 4.98894 5.04998 5.07690 5.15143 5.22278 5.27582 5.32171 5.36027 5.42844 5.49162 5.57752 5.71760 6.27448 6.59876 7.30239 7.33358 8.11144 8.33800 9.28185 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.003262 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.612363 B = 8582.871449 C = 9223.121718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.115 4.115 5 H 0.133 0.867 6 C -0.156 4.156 7 C -0.193 4.193 8 H 0.154 0.846 9 C 0.543 3.457 10 O -0.569 6.569 11 N -0.700 5.700 12 C 0.127 3.873 13 H 0.092 0.908 14 C -0.117 4.117 15 C -0.110 4.110 16 H 0.085 0.915 17 C 0.160 3.840 18 N -0.745 5.745 19 C -0.248 4.248 20 H 0.074 0.926 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.974 3.026 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.279 1.279 27 C -0.142 4.142 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.412 0.588 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.021 0.979 41 H 0.018 0.982 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.082 0.918 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.076 5.492 0.195 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 C -0.196 4.196 4 C -0.133 4.133 5 H 0.151 0.849 6 C -0.193 4.193 7 C -0.213 4.213 8 H 0.171 0.829 9 C 0.331 3.669 10 O -0.449 6.449 11 N -0.351 5.351 12 C 0.021 3.979 13 H 0.110 0.890 14 C -0.155 4.155 15 C -0.129 4.129 16 H 0.104 0.896 17 C 0.034 3.966 18 N -0.388 5.388 19 C -0.380 4.380 20 H 0.092 0.908 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.802 3.198 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.205 1.205 27 C -0.181 4.181 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.145 0.855 37 H 0.249 0.751 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 22.080 5.612 -0.697 22.793 hybrid contribution -1.499 -0.186 0.425 1.570 sum 20.581 5.427 -0.272 21.286 Atomic orbital electron populations 1.21966 0.96402 1.00591 1.01322 1.20701 0.94741 0.96462 0.97233 1.21790 1.01390 0.94690 1.01758 1.22574 1.01079 0.91975 0.97688 0.84905 1.23361 0.98020 0.99970 0.97911 1.22315 1.04557 0.94487 0.99980 0.82896 1.20177 0.78574 0.78621 0.89546 1.90652 1.66956 1.63283 1.23977 1.45679 1.41515 1.37072 1.10846 1.21719 0.90908 0.93861 0.91387 0.88995 1.23220 0.94852 0.94925 1.02507 1.22668 0.94372 0.96540 0.99301 0.89633 1.20821 0.86180 0.95090 0.94521 1.42572 1.03786 1.35385 1.57012 1.19627 0.86312 1.09274 1.22788 0.90789 1.25572 1.01863 0.98955 1.00443 1.69809 1.31020 1.25094 1.36103 0.85212 0.79533 0.77602 0.77423 1.20239 1.22066 1.20527 1.23395 0.96474 0.98010 1.00174 0.93620 0.94579 0.91921 0.91197 0.91562 0.93133 0.92109 0.89055 0.85531 0.75147 0.89002 0.87729 0.96060 0.96358 0.79543 0.94011 0.89965 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 7.49 71.98 0.54 -2.93 16 2 C -0.07 -1.52 2.43 -10.79 -0.03 -1.54 16 3 C -0.14 -2.25 9.15 71.98 0.66 -1.59 16 4 C -0.11 -1.87 5.73 -10.77 -0.06 -1.93 16 5 H 0.13 1.57 8.07 -2.39 -0.02 1.55 16 6 C -0.16 -2.35 9.26 30.62 0.28 -2.06 16 7 C -0.19 -3.23 6.16 -11.54 -0.07 -3.30 16 8 H 0.15 1.78 8.14 -2.38 -0.02 1.76 16 9 C 0.54 12.91 5.56 87.66 0.49 13.40 16 10 O -0.57 -17.72 13.03 -3.03 -0.04 -17.75 16 11 N -0.70 -15.19 5.27 -440.04 -2.32 -17.50 16 12 C 0.13 3.12 4.32 45.52 0.20 3.32 16 13 H 0.09 2.45 7.46 -2.39 -0.02 2.43 16 14 C -0.12 -2.59 7.39 31.12 0.23 -2.36 16 15 C -0.11 -3.34 3.63 -10.27 -0.04 -3.37 16 16 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 17 C 0.16 6.34 6.10 86.38 0.53 6.86 16 18 N -0.75 -38.42 5.60 -343.46 -1.92 -40.34 16 19 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 20 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 22 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 23 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 C -0.14 -4.29 7.43 31.12 0.23 -4.06 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 1.01 5.21 -2.39 -0.01 0.99 16 30 H 0.06 1.33 6.96 -2.39 -0.02 1.31 16 31 H 0.07 1.84 6.39 -2.39 -0.02 1.83 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.72 5.81 -2.38 -0.01 1.71 16 36 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.41 7.23 8.70 -92.71 -0.81 6.42 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 2.16 8.10 -2.38 -0.02 2.14 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.02 0.74 7.84 -2.39 -0.02 0.72 16 42 H 0.37 20.43 7.67 -92.70 -0.71 19.72 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.08 2.59 7.90 -2.39 -0.02 2.57 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.66 355.65 1.76 -67.91 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.54 Total: 35.57 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.26 Total: -16.80 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -3.96 Total: -117.48 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.04 Total: -17.75 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -69.66 1.76 -67.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755480405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.851 kcal (2) G-P(sol) polarization free energy of solvation -69.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds