Wall clock time and date at job start Tue Mar 31 2020 01:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46933 * 2 1 4 4 C 1.52997 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46884 * 55.00385 * 4 3 2 6 6 C 1.52996 * 109.47468 * 295.00064 * 4 3 2 7 7 C 1.50708 * 109.47070 * 175.00021 * 4 3 2 8 8 O 1.21279 * 119.99961 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99790 * 180.02562 * 7 4 3 10 10 C 1.46504 * 119.99598 * 179.97438 * 9 7 4 11 11 C 1.50701 * 109.46443 * 180.02562 * 10 9 7 12 12 C 1.29455 * 117.69696 * 95.00520 * 11 10 9 13 13 C 1.50313 * 123.65334 * 180.85207 * 12 11 10 14 14 N 1.47004 * 109.16757 * 349.02209 * 13 12 11 15 15 C 1.36942 * 121.37572 * 222.97001 * 14 13 12 16 16 H 1.07999 * 119.99959 * 155.96494 * 15 14 13 17 17 C 1.38810 * 119.99794 * 335.96286 * 15 14 13 18 18 N 1.31621 * 120.00086 * 344.52887 * 17 15 14 19 19 Si 1.86798 * 119.99904 * 164.52444 * 17 15 14 20 20 H 1.48504 * 109.47040 * 60.00289 * 19 17 15 21 21 H 1.48498 * 109.47503 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47241 * 300.00536 * 19 17 15 23 23 C 1.47336 * 117.24910 * 42.94457 * 14 13 12 24 24 C 1.49966 * 117.69346 * 274.73456 * 11 10 9 25 25 H 1.08999 * 109.46943 * 60.00137 * 1 2 3 26 26 H 1.09006 * 109.46562 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47037 * 299.99815 * 1 2 3 28 28 H 1.08999 * 109.46943 * 119.99863 * 2 1 3 29 29 H 1.09000 * 109.47037 * 240.00185 * 2 1 3 30 30 H 1.08999 * 109.47368 * 300.00235 * 3 2 1 31 31 H 1.09009 * 109.47112 * 60.00013 * 3 2 1 32 32 H 1.08996 * 109.46884 * 59.99913 * 6 4 3 33 33 H 1.08998 * 109.47381 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.46845 * 300.00165 * 6 4 3 35 35 H 0.97003 * 120.00231 * 0.02562 * 9 7 4 36 36 H 1.08993 * 109.47150 * 299.99715 * 10 9 7 37 37 H 1.09003 * 109.47021 * 60.00379 * 10 9 7 38 38 H 1.08006 * 118.17298 * 0.87623 * 12 11 10 39 39 H 1.09000 * 109.52371 * 108.93048 * 13 12 11 40 40 H 1.09003 * 109.52638 * 229.11260 * 13 12 11 41 41 H 0.97003 * 119.99586 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.77974 * 57.81170 * 23 14 13 43 43 H 1.09008 * 109.77789 * 178.62134 * 23 14 13 44 44 H 1.08999 * 109.31985 * 281.29393 * 24 11 10 45 45 H 1.09003 * 109.31340 * 40.72588 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0795 0.8331 1.3082 7 6 4.0723 2.8580 -0.1232 8 8 3.2842 3.7763 -0.2035 9 7 5.3974 3.1033 -0.1446 10 6 5.8857 4.4793 -0.2656 11 6 7.3927 4.4791 -0.2661 12 6 7.9940 4.4789 -1.4125 13 6 9.4889 4.4601 -1.5690 14 7 10.1142 4.7074 -0.2618 15 6 11.1863 5.5495 -0.1323 16 1 11.3900 6.0223 0.8172 17 6 12.0112 5.7954 -1.2212 18 7 11.9615 5.0089 -2.2754 19 14 13.1920 7.2426 -1.1905 20 1 14.1350 7.0880 -0.0537 21 1 13.9543 7.2867 -2.4641 22 1 12.4250 8.5039 -1.0293 23 6 9.5395 4.0124 0.9032 24 6 8.0901 4.4856 1.0615 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.7162 -0.1906 1.3978 33 1 5.1695 0.8336 1.3089 34 1 3.7158 1.4227 2.1498 35 1 6.0278 2.3688 -0.0808 36 1 5.5225 4.9131 -1.1972 37 1 5.5223 5.0691 0.5760 38 1 7.3878 4.4933 -2.3063 39 1 9.8035 3.4865 -1.9450 40 1 9.7915 5.2375 -2.2706 41 1 12.5377 5.1810 -3.0365 42 1 9.5639 2.9351 0.7391 43 1 10.1076 4.2627 1.7993 44 1 8.0796 5.4963 1.4695 45 1 7.5675 3.8179 1.7465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755884369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:57 Heat of formation + Delta-G solvation = -26.650760 kcal Electronic energy + Delta-G solvation = -21902.801559 eV Core-core repulsion = 18727.123259 eV Total energy + Delta-G solvation = -3175.678300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.96395 -37.85899 -36.16823 -34.90801 -33.03963 -32.09719 -30.78620 -29.72789 -27.09677 -26.78112 -24.66821 -23.44408 -22.72664 -21.31617 -20.99268 -19.87051 -17.72973 -17.16809 -16.10612 -15.79293 -15.64725 -15.21899 -14.83472 -14.28900 -14.19223 -13.91501 -13.68376 -13.40617 -13.40268 -12.96208 -12.64711 -12.48263 -12.27464 -12.10681 -12.01965 -11.59233 -11.48669 -11.35042 -11.18434 -11.04699 -10.91683 -10.75040 -10.74527 -10.42406 -10.34585 -9.85816 -9.76642 -9.58833 -8.93209 -8.70138 -8.07589 -6.77687 -5.82446 -3.21414 2.59249 2.70129 3.37416 3.43147 3.44537 3.54997 4.47252 4.51559 4.59309 4.67798 4.92873 5.00561 5.06850 5.13121 5.31028 5.33735 5.38107 5.42559 5.54115 5.56848 5.59902 5.64564 5.73374 5.82149 5.85028 5.90718 5.95580 6.05385 6.09090 6.14747 6.17381 6.30319 6.45539 6.54989 6.70665 6.83949 7.14136 7.23174 7.30301 7.62199 7.70322 7.79760 8.29597 8.35323 9.16686 9.79382 10.37264 11.28006 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.046146 B = 0.002835 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.618559 B = 9874.800585 C = 9931.420817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.096 0.904 6 C -0.145 4.145 7 C 0.512 3.488 8 O -0.548 6.548 9 N -0.720 5.720 10 C 0.157 3.843 11 C -0.166 4.166 12 C -0.125 4.125 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.247 4.247 16 H 0.068 0.932 17 C -0.001 4.001 18 N -0.910 5.910 19 Si 0.906 3.094 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.144 3.856 24 C -0.090 4.090 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.255 0.745 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 -10.210 4.610 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.133 4.133 5 H 0.114 0.886 6 C -0.203 4.203 7 C 0.298 3.702 8 O -0.426 6.426 9 N -0.371 5.371 10 C 0.034 3.966 11 C -0.167 4.167 12 C -0.146 4.146 13 C 0.069 3.931 14 N -0.318 5.318 15 C -0.376 4.376 16 H 0.086 0.914 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.017 3.983 24 C -0.129 4.129 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.405 -9.501 4.406 20.313 hybrid contribution 0.939 0.455 -0.150 1.055 sum -16.466 -9.045 4.256 19.263 Atomic orbital electron populations 1.21763 0.95833 1.01412 1.01969 1.21608 0.95964 0.96742 1.02068 1.21422 0.92352 0.96514 1.03497 1.21349 0.97778 0.93658 1.00551 0.88614 1.21828 1.01355 1.01255 0.95855 1.20697 0.82322 0.91252 0.75894 1.90679 1.55433 1.46536 1.49918 1.46230 1.06768 1.09922 1.74212 1.20446 0.92176 0.82433 1.01553 1.20502 0.92472 1.07529 0.96179 1.23282 1.00103 0.95064 0.96123 1.19757 0.83890 1.00590 0.88859 1.44122 1.33974 1.51566 1.02184 1.19141 1.02584 1.18325 0.97577 0.91396 1.24992 0.97936 0.99051 0.97930 1.69998 1.41366 1.36952 1.07208 0.86314 0.80592 0.82682 0.76863 1.20907 1.21616 1.21061 1.20990 0.91205 0.94411 0.91650 1.20785 0.97763 1.00920 0.93406 0.92717 0.92866 0.92722 0.91731 0.92024 0.91173 0.91363 0.91278 0.91987 0.92099 0.76460 0.91799 0.91721 0.88820 0.94115 0.88886 0.93532 0.95884 0.92468 0.91743 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.92 5.69 -26.73 -0.15 -1.07 16 3 C -0.10 -0.95 4.03 -26.73 -0.11 -1.05 16 4 C -0.11 -1.06 2.72 -91.77 -0.25 -1.31 16 5 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.15 -1.14 8.85 37.16 0.33 -0.81 16 7 C 0.51 6.82 7.15 -10.98 -0.08 6.74 16 8 O -0.55 -9.40 15.92 5.56 0.09 -9.31 16 9 N -0.72 -9.30 5.44 -61.47 -0.33 -9.63 16 10 C 0.16 2.36 5.66 -5.19 -0.03 2.33 16 11 C -0.17 -2.82 5.22 -100.99 -0.53 -3.35 16 12 C -0.13 -2.35 9.47 -35.79 -0.34 -2.69 16 13 C 0.19 4.52 5.23 -5.11 -0.03 4.50 16 14 N -0.60 -14.67 3.01 -173.57 -0.52 -15.19 16 15 C -0.25 -6.70 9.71 -15.06 -0.15 -6.85 16 16 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 17 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 18 N -0.91 -25.96 11.08 55.49 0.61 -25.34 16 19 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.14 2.91 6.59 -3.44 -0.02 2.89 16 24 C -0.09 -1.53 5.95 -28.09 -0.17 -1.70 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 33 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.40 4.51 7.88 -40.82 -0.32 4.18 16 36 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 37 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 38 H 0.09 1.59 7.73 -52.48 -0.41 1.19 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.13 7.96 -51.92 -0.41 0.71 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -30.51 357.81 -9.01 -39.52 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.99 Total: 1.18 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.24 Total: -3.18 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.24 Total: -50.16 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.51 -9.01 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755884369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.874 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds