Wall clock time and date at job start Tue Mar 31 2020 01:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46933 * 2 1 4 4 C 1.52997 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46884 * 55.00385 * 4 3 2 6 6 C 1.52996 * 109.47468 * 295.00064 * 4 3 2 7 7 C 1.50708 * 109.47070 * 175.00021 * 4 3 2 8 8 O 1.21279 * 119.99961 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99790 * 180.02562 * 7 4 3 10 10 C 1.46504 * 119.99598 * 179.97438 * 9 7 4 11 11 C 1.50701 * 109.46443 * 180.02562 * 10 9 7 12 12 C 1.29455 * 117.69696 * 95.00520 * 11 10 9 13 13 C 1.50313 * 123.65334 * 180.85207 * 12 11 10 14 14 N 1.47004 * 109.16757 * 349.02209 * 13 12 11 15 15 C 1.36942 * 121.37572 * 222.97001 * 14 13 12 16 16 H 1.07999 * 119.99959 * 155.96494 * 15 14 13 17 17 C 1.38810 * 119.99794 * 335.96286 * 15 14 13 18 18 N 1.31621 * 120.00086 * 344.52887 * 17 15 14 19 19 Si 1.86798 * 119.99904 * 164.52444 * 17 15 14 20 20 H 1.48504 * 109.47040 * 60.00289 * 19 17 15 21 21 H 1.48498 * 109.47503 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47241 * 300.00536 * 19 17 15 23 23 C 1.47336 * 117.24910 * 42.94457 * 14 13 12 24 24 C 1.49966 * 117.69346 * 274.73456 * 11 10 9 25 25 H 1.08999 * 109.46943 * 60.00137 * 1 2 3 26 26 H 1.09006 * 109.46562 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47037 * 299.99815 * 1 2 3 28 28 H 1.08999 * 109.46943 * 119.99863 * 2 1 3 29 29 H 1.09000 * 109.47037 * 240.00185 * 2 1 3 30 30 H 1.08999 * 109.47368 * 300.00235 * 3 2 1 31 31 H 1.09009 * 109.47112 * 60.00013 * 3 2 1 32 32 H 1.08996 * 109.46884 * 59.99913 * 6 4 3 33 33 H 1.08998 * 109.47381 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.46845 * 300.00165 * 6 4 3 35 35 H 0.97003 * 120.00231 * 0.02562 * 9 7 4 36 36 H 1.08993 * 109.47150 * 299.99715 * 10 9 7 37 37 H 1.09003 * 109.47021 * 60.00379 * 10 9 7 38 38 H 1.08006 * 118.17298 * 0.87623 * 12 11 10 39 39 H 1.09000 * 109.52371 * 108.93048 * 13 12 11 40 40 H 1.09003 * 109.52638 * 229.11260 * 13 12 11 41 41 H 0.97003 * 119.99586 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.77974 * 57.81170 * 23 14 13 43 43 H 1.09008 * 109.77789 * 178.62134 * 23 14 13 44 44 H 1.08999 * 109.31985 * 281.29393 * 24 11 10 45 45 H 1.09003 * 109.31340 * 40.72588 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0795 0.8331 1.3082 7 6 4.0723 2.8580 -0.1232 8 8 3.2842 3.7763 -0.2035 9 7 5.3974 3.1033 -0.1446 10 6 5.8857 4.4793 -0.2656 11 6 7.3927 4.4791 -0.2661 12 6 7.9940 4.4789 -1.4125 13 6 9.4889 4.4601 -1.5690 14 7 10.1142 4.7074 -0.2618 15 6 11.1863 5.5495 -0.1323 16 1 11.3900 6.0223 0.8172 17 6 12.0112 5.7954 -1.2212 18 7 11.9615 5.0089 -2.2754 19 14 13.1920 7.2426 -1.1905 20 1 14.1350 7.0880 -0.0537 21 1 13.9543 7.2867 -2.4641 22 1 12.4250 8.5039 -1.0293 23 6 9.5395 4.0124 0.9032 24 6 8.0901 4.4856 1.0615 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.7162 -0.1906 1.3978 33 1 5.1695 0.8336 1.3089 34 1 3.7158 1.4227 2.1498 35 1 6.0278 2.3688 -0.0808 36 1 5.5225 4.9131 -1.1972 37 1 5.5223 5.0691 0.5760 38 1 7.3878 4.4933 -2.3063 39 1 9.8035 3.4865 -1.9450 40 1 9.7915 5.2375 -2.2706 41 1 12.5377 5.1810 -3.0365 42 1 9.5639 2.9351 0.7391 43 1 10.1076 4.2627 1.7993 44 1 8.0796 5.4963 1.4695 45 1 7.5675 3.8179 1.7465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755884369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:56 Heat of formation + Delta-G solvation = -44.373867 kcal Electronic energy + Delta-G solvation = -21903.570091 eV Core-core repulsion = 18727.123259 eV Total energy + Delta-G solvation = -3176.446832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04288 -39.40221 -37.00875 -36.32962 -34.57715 -33.08741 -32.28745 -31.40813 -28.61414 -27.47491 -26.17535 -24.64169 -24.19718 -22.81013 -21.94544 -20.81442 -19.49697 -18.31714 -17.30518 -17.18244 -16.94067 -16.61399 -15.92901 -15.74061 -15.45604 -15.23329 -14.85062 -14.83818 -14.57860 -14.02681 -13.93503 -13.61150 -13.38728 -13.27957 -13.11989 -12.91534 -12.77800 -12.71381 -12.58954 -12.26373 -12.12978 -12.11484 -11.82988 -11.71949 -11.69968 -11.38697 -11.27821 -10.80430 -10.67458 -10.08331 -9.65013 -8.75531 -7.88935 -5.30137 1.18246 1.46757 1.49539 1.55744 1.66159 2.45192 2.50907 3.28152 3.61810 3.72489 3.82586 3.89431 3.95542 4.00183 4.32516 4.39330 4.42514 4.43458 4.52970 4.61080 4.68343 4.74876 4.82334 4.84347 4.91179 4.93084 4.98348 5.05386 5.09828 5.15100 5.20914 5.25479 5.32606 5.37073 5.43413 5.46731 5.47498 5.54015 5.60804 5.76140 6.15719 6.33451 6.58693 7.13034 7.26078 7.83162 8.36717 9.19461 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.046146 B = 0.002835 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.618559 B = 9874.800585 C = 9931.420817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.105 4.105 5 H 0.116 0.884 6 C -0.142 4.142 7 C 0.510 3.490 8 O -0.590 6.590 9 N -0.712 5.712 10 C 0.166 3.834 11 C -0.138 4.138 12 C -0.143 4.143 13 C 0.205 3.795 14 N -0.616 5.616 15 C -0.258 4.258 16 H 0.070 0.930 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.968 3.032 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.139 3.861 24 C -0.084 4.084 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.412 0.588 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.015 0.985 40 H 0.056 0.944 41 H 0.250 0.750 42 H 0.030 0.970 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.011 -11.334 5.985 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.126 4.126 5 H 0.133 0.867 6 C -0.200 4.200 7 C 0.298 3.702 8 O -0.470 6.470 9 N -0.364 5.364 10 C 0.043 3.957 11 C -0.139 4.139 12 C -0.163 4.163 13 C 0.080 3.920 14 N -0.340 5.340 15 C -0.388 4.388 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.586 5.586 19 Si 0.796 3.204 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.207 1.207 23 C 0.014 3.986 24 C -0.122 4.122 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.249 0.751 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.448 -10.655 5.813 22.083 hybrid contribution 1.214 0.777 -0.506 1.528 sum -17.234 -9.878 5.307 20.561 Atomic orbital electron populations 1.21783 0.95764 1.02074 1.01574 1.21583 0.96036 0.95122 1.03088 1.21389 0.92465 0.97797 1.01913 1.21391 0.97591 0.91209 1.02407 0.86654 1.21841 1.01815 1.02079 0.94234 1.21400 0.81785 0.92460 0.74541 1.90667 1.56390 1.48194 1.51782 1.46092 1.07109 1.09266 1.73908 1.20202 0.90353 0.83819 1.01365 1.20607 0.93533 1.04253 0.95473 1.22945 0.97403 0.98211 0.97785 1.19397 0.86738 0.98003 0.87846 1.44409 1.33888 1.51979 1.03707 1.19478 1.03070 1.18602 0.97636 0.91215 1.25740 0.99925 1.01414 0.97850 1.70157 1.42301 1.38445 1.07661 0.85330 0.78687 0.79703 0.76679 1.19998 1.22045 1.20746 1.21183 0.92838 0.94486 0.90120 1.20723 0.95909 1.01521 0.94067 0.93323 0.91647 0.93008 0.90416 0.91179 0.93112 0.92713 0.89181 0.91230 0.92920 0.75129 0.92425 0.91647 0.87134 0.96690 0.92572 0.94105 0.95180 0.92249 0.91973 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.46 5.69 30.59 0.17 -1.29 16 3 C -0.10 -1.71 4.03 30.59 0.12 -1.59 16 4 C -0.10 -1.74 2.72 -11.54 -0.03 -1.77 16 5 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 6 C -0.14 -1.77 8.85 71.98 0.64 -1.13 16 7 C 0.51 12.67 7.15 87.66 0.63 13.29 16 8 O -0.59 -19.80 15.92 -3.03 -0.05 -19.85 16 9 N -0.71 -16.63 5.44 -466.77 -2.54 -19.17 16 10 C 0.17 4.67 5.66 85.63 0.48 5.15 16 11 C -0.14 -4.42 5.22 -15.14 -0.08 -4.50 16 12 C -0.14 -5.31 9.47 27.10 0.26 -5.05 16 13 C 0.21 9.82 5.23 85.42 0.45 10.27 16 14 N -0.62 -30.53 3.01 -703.04 -2.11 -32.65 16 15 C -0.26 -14.10 9.71 84.03 0.82 -13.29 16 16 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 17 C -0.05 -3.03 5.01 84.86 0.43 -2.61 16 18 N -0.94 -55.13 11.08 21.65 0.24 -54.89 16 19 Si 0.97 44.90 29.58 68.60 2.03 46.92 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 C 0.14 5.43 6.59 86.32 0.57 6.00 16 24 C -0.08 -2.65 5.95 29.71 0.18 -2.47 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.75 6.56 -2.39 -0.02 0.74 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 1.08 7.96 -2.39 -0.02 1.06 16 31 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.09 0.78 6.56 -2.39 -0.02 0.76 16 33 H 0.07 0.78 7.57 -2.39 -0.02 0.76 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.41 7.95 7.88 -92.71 -0.73 7.21 16 36 H 0.06 1.74 7.78 -2.39 -0.02 1.72 16 37 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 38 H 0.11 3.70 7.73 -2.91 -0.02 3.68 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 3.07 6.41 -2.39 -0.02 3.05 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 2.26 7.96 -2.38 -0.02 2.24 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -67.22 357.81 3.13 -64.09 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.22 Total: 15.68 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.34 Total: -0.14 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -4.41 Total: -106.71 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.22 3.13 -64.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755884369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.718 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds