Wall clock time and date at job start Tue Mar 31 2020 01:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 H 1.09005 * 109.47455 * 54.99223 * 3 2 1 5 5 C 1.50705 * 109.47836 * 174.99873 * 3 2 1 6 6 H 1.07993 * 119.99934 * 119.99475 * 5 3 2 7 7 C 1.37877 * 119.99425 * 300.00315 * 5 3 2 8 8 N 1.31513 * 120.00388 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99544 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46856 * 89.99851 * 9 7 5 11 11 H 1.48499 * 109.47055 * 209.99670 * 9 7 5 12 12 H 1.48503 * 109.47130 * 329.99828 * 9 7 5 13 13 N 1.46510 * 109.47097 * 295.00053 * 3 2 1 14 14 C 1.34774 * 120.00012 * 85.27177 * 13 3 2 15 15 O 1.21280 * 120.00140 * 355.25242 * 14 13 3 16 16 C 1.50694 * 119.99706 * 175.25495 * 14 13 3 17 17 H 1.08998 * 109.47379 * 32.74045 * 16 14 13 18 18 C 1.53000 * 109.46903 * 272.73986 * 16 14 13 19 19 C 1.53001 * 117.50144 * 132.80851 * 18 16 14 20 20 C 1.52999 * 117.50206 * 64.14547 * 18 16 14 21 21 N 1.46899 * 109.47289 * 152.74327 * 16 14 13 22 22 C 1.48533 * 111.00599 * 177.59923 * 21 16 14 23 23 C 1.54937 * 103.22974 * 159.71777 * 22 21 16 24 24 C 1.54602 * 102.92103 * 322.58871 * 23 22 21 25 25 C 1.47904 * 110.99731 * 294.99515 * 21 16 14 26 26 H 1.09004 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47738 * 300.00227 * 1 2 3 28 28 H 1.09007 * 109.47296 * 60.00279 * 1 2 3 29 29 H 1.09002 * 109.47667 * 239.99489 * 2 1 3 30 30 H 1.09007 * 109.47296 * 119.99721 * 2 1 3 31 31 H 0.96999 * 119.99672 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99423 * 265.00243 * 13 3 2 33 33 H 1.09006 * 115.54949 * 278.47434 * 18 16 14 34 34 H 1.09000 * 117.49744 * 359.97438 * 19 18 16 35 35 H 1.09005 * 117.50271 * 145.01777 * 19 18 16 36 36 H 1.08994 * 117.50357 * 214.98109 * 20 18 16 37 37 H 1.08999 * 117.49364 * 0.02562 * 20 18 16 38 38 H 1.08997 * 110.66805 * 278.16192 * 22 21 16 39 39 H 1.09006 * 110.66381 * 41.28313 * 22 21 16 40 40 H 1.09000 * 110.72466 * 204.22969 * 23 22 21 41 41 H 1.08996 * 110.72132 * 80.94859 * 23 22 21 42 42 H 1.09000 * 110.30482 * 263.03740 * 24 23 22 43 43 H 1.08993 * 110.30216 * 140.87602 * 24 23 22 44 44 H 1.09000 * 109.91909 * 333.51078 * 25 21 16 45 45 H 1.08999 * 109.91610 * 94.60579 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8802 1.3813 10 1 6.4425 2.1132 2.0838 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8397 0.0271 13 7 1.6523 2.0975 -1.2519 14 6 0.4371 2.6692 -1.3652 15 8 -0.3674 2.5673 -0.4634 16 6 0.0781 3.4350 -2.6124 17 1 0.5746 2.9838 -3.4714 18 6 0.5320 4.8888 -2.4665 19 6 1.2934 5.5122 -3.6381 20 6 2.0346 5.1514 -2.3482 21 7 -1.3769 3.3938 -2.8105 22 6 -1.7748 4.1879 -4.0010 23 6 -3.1723 3.6202 -4.3549 24 6 -3.0175 2.1108 -4.0584 25 6 -1.8370 2.0132 -3.0745 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8292 -0.0603 2.9503 32 1 2.2719 2.1230 -1.9978 33 1 -0.1381 5.5360 -1.9005 34 1 1.4714 4.8864 -4.5126 35 1 1.1246 6.5695 -3.8426 36 1 2.3532 5.9714 -1.7047 37 1 2.6998 4.2883 -2.3748 38 1 -1.8414 5.2470 -3.7523 39 1 -1.0754 4.0277 -4.8216 40 1 -3.4003 3.7851 -5.4079 41 1 -3.9401 4.0614 -3.7193 42 1 -2.7919 1.5664 -4.9754 43 1 -3.9258 1.7204 -3.5996 44 1 -1.0297 1.4315 -3.5196 45 1 -2.1622 1.5460 -2.1450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132077741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:34 Heat of formation + Delta-G solvation = -10.964590 kcal Electronic energy + Delta-G solvation = -23479.146220 eV Core-core repulsion = 20304.148123 eV Total energy + Delta-G solvation = -3174.998097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97149 -37.97687 -36.75254 -34.91844 -32.29753 -31.87055 -30.78165 -28.83570 -27.33727 -26.10702 -23.09201 -22.31166 -21.68244 -21.19399 -20.43022 -19.65809 -19.22972 -17.12723 -16.56308 -15.96881 -15.41656 -15.20066 -14.78054 -14.58807 -14.11675 -13.67170 -13.63022 -13.20334 -12.67731 -12.45723 -12.26775 -12.20901 -11.72409 -11.54620 -11.44206 -11.31467 -11.23108 -11.13916 -10.99730 -10.91953 -10.79294 -10.55099 -10.34155 -10.27370 -10.16906 -10.08950 -9.56024 -9.01910 -8.74650 -8.45823 -8.20757 -7.72718 -6.09989 -4.19200 3.25079 3.31848 3.33175 3.40811 3.77185 3.86654 4.30259 4.46863 4.64823 4.78717 4.88341 4.98133 5.02676 5.12010 5.21283 5.26639 5.30637 5.49676 5.56103 5.63324 5.68837 5.76801 5.79282 5.83133 6.00630 6.04784 6.10476 6.16737 6.25763 6.31562 6.44176 6.53062 6.72342 6.98843 7.05119 7.10364 7.27215 7.43227 7.53237 7.65791 7.79124 7.95045 8.22109 8.74235 8.83070 9.24232 9.48891 10.95253 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.005147 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.491308 B = 5438.422266 C = 6400.464824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.510 3.490 15 O -0.525 6.525 16 C 0.091 3.909 17 H 0.052 0.948 18 C -0.137 4.137 19 C -0.181 4.181 20 C -0.168 4.168 21 N -0.489 5.489 22 C 0.039 3.961 23 C -0.123 4.123 24 C -0.129 4.129 25 C 0.036 3.964 26 H 0.019 0.981 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.028 0.972 30 H 0.097 0.903 31 H 0.264 0.736 32 H 0.383 0.617 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 6.453 -14.029 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.293 3.707 15 O -0.402 6.402 16 C -0.021 4.021 17 H 0.069 0.931 18 C -0.156 4.156 19 C -0.218 4.218 20 C -0.205 4.205 21 N -0.213 5.213 22 C -0.089 4.089 23 C -0.161 4.161 24 C -0.168 4.168 25 C -0.091 4.091 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.215 0.785 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.180 6.464 -12.665 16.405 hybrid contribution 1.822 -0.400 -0.953 2.095 sum -6.358 6.064 -13.618 16.206 Atomic orbital electron populations 1.21867 0.98243 0.97733 1.01511 1.21925 0.92708 0.99905 1.02038 1.18734 0.94001 0.89094 0.80953 0.93515 1.21228 0.90786 1.38870 1.06181 0.92222 1.24874 0.98445 0.94858 0.95445 1.69898 1.35051 1.37679 1.09299 0.86491 0.85073 0.77630 0.78144 1.20588 1.21116 1.19910 1.46523 1.14781 1.56214 1.18359 1.19959 0.82895 0.79690 0.88172 1.90664 1.49014 1.59741 1.40737 1.21415 0.89281 0.94676 0.96733 0.93068 1.22010 0.95471 0.95120 1.02976 1.23070 1.05053 1.01205 0.92479 1.23011 0.94046 1.03892 0.99577 1.64569 1.10938 1.09207 1.36621 1.23206 0.95438 0.98940 0.91308 1.22475 0.97389 0.95396 1.00852 1.22392 0.98845 0.96729 0.98802 1.22887 0.96423 0.90136 0.99685 0.96205 0.93188 0.93948 0.95289 0.88446 0.92617 0.78486 0.86709 0.89138 0.88797 0.88419 0.88144 0.89989 0.94029 0.91326 0.90723 0.91789 0.91020 0.94226 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.47 37.15 0.31 -2.78 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.25 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.37 7.64 -51.93 -0.40 0.97 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.71 -14.63 4.81 -54.93 -0.26 -14.89 16 14 C 0.51 10.14 4.85 -10.99 -0.05 10.09 16 15 O -0.53 -12.41 13.08 5.56 0.07 -12.34 16 16 C 0.09 1.42 1.77 -68.87 -0.12 1.30 16 17 H 0.05 0.74 7.75 -51.93 -0.40 0.33 16 18 C -0.14 -1.90 4.25 -90.62 -0.39 -2.29 16 19 C -0.18 -1.98 10.15 -26.69 -0.27 -2.25 16 20 C -0.17 -2.23 9.98 -26.69 -0.27 -2.50 16 21 N -0.49 -7.29 4.79 -223.89 -1.07 -8.36 16 22 C 0.04 0.44 5.70 -1.90 -0.01 0.43 16 23 C -0.12 -1.23 7.06 -24.87 -0.18 -1.40 16 24 C -0.13 -1.41 6.93 -25.37 -0.18 -1.59 16 25 C 0.04 0.52 5.83 -2.75 -0.02 0.51 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 1.22 7.80 -51.93 -0.41 0.81 16 28 H 0.04 0.93 5.56 -51.93 -0.29 0.64 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 32 H 0.38 7.01 7.98 -40.82 -0.33 6.69 16 33 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.10 1.43 7.36 -51.93 -0.38 1.04 16 38 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 39 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.57 7.65 -51.93 -0.40 0.17 16 45 H 0.09 1.47 7.97 -51.93 -0.41 1.06 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -29.50 350.57 -10.15 -39.65 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -7.92 Total: 8.78 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.86 Total: -9.56 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.71 Total: -47.35 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.50 -10.15 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132077741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.682 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds