Wall clock time and date at job start Tue Mar 31 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 H 1.09005 * 109.47455 * 54.99223 * 3 2 1 5 5 C 1.50705 * 109.47836 * 174.99873 * 3 2 1 6 6 H 1.07993 * 119.99934 * 119.99475 * 5 3 2 7 7 C 1.37877 * 119.99425 * 300.00315 * 5 3 2 8 8 N 1.31513 * 120.00388 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99544 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46856 * 89.99851 * 9 7 5 11 11 H 1.48499 * 109.47055 * 209.99670 * 9 7 5 12 12 H 1.48503 * 109.47130 * 329.99828 * 9 7 5 13 13 N 1.46510 * 109.47097 * 295.00053 * 3 2 1 14 14 C 1.34774 * 120.00012 * 85.27177 * 13 3 2 15 15 O 1.21280 * 120.00140 * 355.25242 * 14 13 3 16 16 C 1.50694 * 119.99706 * 175.25495 * 14 13 3 17 17 H 1.08998 * 109.47379 * 32.74045 * 16 14 13 18 18 C 1.53000 * 109.46903 * 272.73986 * 16 14 13 19 19 C 1.53001 * 117.50144 * 132.80851 * 18 16 14 20 20 C 1.52999 * 117.50206 * 64.14547 * 18 16 14 21 21 N 1.46899 * 109.47289 * 152.74327 * 16 14 13 22 22 C 1.48533 * 111.00599 * 177.59923 * 21 16 14 23 23 C 1.54937 * 103.22974 * 159.71777 * 22 21 16 24 24 C 1.54602 * 102.92103 * 322.58871 * 23 22 21 25 25 C 1.47904 * 110.99731 * 294.99515 * 21 16 14 26 26 H 1.09004 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47738 * 300.00227 * 1 2 3 28 28 H 1.09007 * 109.47296 * 60.00279 * 1 2 3 29 29 H 1.09002 * 109.47667 * 239.99489 * 2 1 3 30 30 H 1.09007 * 109.47296 * 119.99721 * 2 1 3 31 31 H 0.96999 * 119.99672 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99423 * 265.00243 * 13 3 2 33 33 H 1.09006 * 115.54949 * 278.47434 * 18 16 14 34 34 H 1.09000 * 117.49744 * 359.97438 * 19 18 16 35 35 H 1.09005 * 117.50271 * 145.01777 * 19 18 16 36 36 H 1.08994 * 117.50357 * 214.98109 * 20 18 16 37 37 H 1.08999 * 117.49364 * 0.02562 * 20 18 16 38 38 H 1.08997 * 110.66805 * 278.16192 * 22 21 16 39 39 H 1.09006 * 110.66381 * 41.28313 * 22 21 16 40 40 H 1.09000 * 110.72466 * 204.22969 * 23 22 21 41 41 H 1.08996 * 110.72132 * 80.94859 * 23 22 21 42 42 H 1.09000 * 110.30482 * 263.03740 * 24 23 22 43 43 H 1.08993 * 110.30216 * 140.87602 * 24 23 22 44 44 H 1.09000 * 109.91909 * 333.51078 * 25 21 16 45 45 H 1.08999 * 109.91610 * 94.60579 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8802 1.3813 10 1 6.4425 2.1132 2.0838 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8397 0.0271 13 7 1.6523 2.0975 -1.2519 14 6 0.4371 2.6692 -1.3652 15 8 -0.3674 2.5673 -0.4634 16 6 0.0781 3.4350 -2.6124 17 1 0.5746 2.9838 -3.4714 18 6 0.5320 4.8888 -2.4665 19 6 1.2934 5.5122 -3.6381 20 6 2.0346 5.1514 -2.3482 21 7 -1.3769 3.3938 -2.8105 22 6 -1.7748 4.1879 -4.0010 23 6 -3.1723 3.6202 -4.3549 24 6 -3.0175 2.1108 -4.0584 25 6 -1.8370 2.0132 -3.0745 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8292 -0.0603 2.9503 32 1 2.2719 2.1230 -1.9978 33 1 -0.1381 5.5360 -1.9005 34 1 1.4714 4.8864 -4.5126 35 1 1.1246 6.5695 -3.8426 36 1 2.3532 5.9714 -1.7047 37 1 2.6998 4.2883 -2.3748 38 1 -1.8414 5.2470 -3.7523 39 1 -1.0754 4.0277 -4.8216 40 1 -3.4003 3.7851 -5.4079 41 1 -3.9401 4.0614 -3.7193 42 1 -2.7919 1.5664 -4.9754 43 1 -3.9258 1.7204 -3.5996 44 1 -1.0297 1.4315 -3.5196 45 1 -2.1622 1.5460 -2.1450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132077741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:33 Heat of formation + Delta-G solvation = -29.842930 kcal Electronic energy + Delta-G solvation = -23479.964846 eV Core-core repulsion = 20304.148123 eV Total energy + Delta-G solvation = -3175.816723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33100 -39.35462 -37.80484 -36.80919 -34.23241 -33.13248 -32.49048 -29.81032 -29.12950 -27.49965 -25.01745 -23.34168 -22.86505 -22.37579 -21.61928 -21.10451 -20.90294 -18.85351 -17.84630 -17.33606 -16.96971 -16.68971 -16.20758 -16.14542 -15.43786 -15.00400 -14.93806 -14.58927 -14.50150 -13.71314 -13.54866 -13.40509 -13.31202 -13.20837 -13.02125 -12.85737 -12.70167 -12.39005 -12.24928 -12.14987 -12.14685 -12.06306 -11.94602 -11.56045 -11.46088 -11.35917 -11.19755 -11.05211 -10.54985 -10.26453 -9.56979 -9.33252 -8.15094 -6.32392 1.44496 1.44685 1.55254 1.87682 2.32171 2.51732 2.78732 3.14064 3.20042 3.69168 3.78225 3.89672 3.98795 4.00722 4.03948 4.14835 4.29197 4.38391 4.47935 4.55030 4.58731 4.65474 4.75958 4.77416 4.80672 4.94660 5.01075 5.02386 5.06890 5.09969 5.19810 5.23189 5.25460 5.26653 5.33891 5.45529 5.56600 5.65388 5.79293 5.88882 5.97432 6.06864 6.18127 6.75995 7.05996 7.35266 7.65696 8.90287 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.005147 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.491308 B = 5438.422266 C = 6400.464824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.284 3.716 4 H -0.007 1.007 5 C -0.544 4.544 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.260 1.260 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.569 6.569 16 C 0.106 3.894 17 H 0.069 0.931 18 C -0.156 4.156 19 C -0.139 4.139 20 C -0.185 4.185 21 N -0.513 5.513 22 C 0.040 3.960 23 C -0.117 4.117 24 C -0.124 4.124 25 C 0.034 3.966 26 H 0.041 0.959 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.397 0.603 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 7.414 -17.248 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.180 3.820 4 H 0.011 0.989 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.184 1.184 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.447 6.447 16 C -0.007 4.007 17 H 0.087 0.913 18 C -0.175 4.175 19 C -0.176 4.176 20 C -0.223 4.223 21 N -0.239 5.239 22 C -0.087 4.087 23 C -0.155 4.155 24 C -0.162 4.162 25 C -0.094 4.094 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.231 0.769 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.596 7.444 -15.933 19.157 hybrid contribution 1.587 -0.674 0.094 1.727 sum -6.009 6.770 -15.839 18.243 Atomic orbital electron populations 1.21687 0.97011 0.98705 1.00388 1.21775 0.93682 0.99382 1.01035 1.18290 0.93534 0.88919 0.81228 0.98917 1.21558 0.91356 1.38733 1.06609 0.91086 1.25759 1.03199 0.94404 0.95054 1.70058 1.37037 1.38478 1.09850 0.85400 0.79266 0.77387 0.78607 1.20435 1.21069 1.18393 1.46288 1.15653 1.56194 1.17339 1.20845 0.81756 0.78858 0.89333 1.90644 1.50158 1.61111 1.42830 1.21242 0.90262 0.94901 0.94258 0.91296 1.21935 0.95543 0.94065 1.05929 1.23163 1.00538 1.02494 0.91359 1.23042 0.93372 1.03792 1.02075 1.64492 1.10335 1.09853 1.39170 1.23300 0.96481 0.98685 0.90228 1.22490 0.96343 0.94134 1.02505 1.22376 0.97274 0.97986 0.98531 1.22838 0.97771 0.89874 0.98896 0.94018 0.95892 0.93467 0.94311 0.91152 0.92684 0.76868 0.87973 0.87402 0.86519 0.88476 0.89226 0.89438 0.92475 0.88443 0.91176 0.89847 0.90864 0.94564 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.47 71.98 0.61 -5.06 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.89 16 3 C 0.28 14.77 2.24 44.24 0.10 14.87 16 4 H -0.01 -0.44 7.64 -2.38 -0.02 -0.46 16 5 C -0.54 -28.89 8.73 25.60 0.22 -28.66 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -52.99 11.29 21.45 0.24 -52.75 16 9 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.71 -29.62 4.81 -446.08 -2.14 -31.77 16 14 C 0.51 20.66 4.85 87.66 0.43 21.08 16 15 O -0.57 -28.26 13.08 -3.03 -0.04 -28.30 16 16 C 0.11 3.19 1.77 44.17 0.08 3.26 16 17 H 0.07 1.82 7.75 -2.39 -0.02 1.81 16 18 C -0.16 -4.12 4.25 -10.79 -0.05 -4.17 16 19 C -0.14 -2.54 10.15 30.62 0.31 -2.23 16 20 C -0.19 -4.68 9.98 30.62 0.31 -4.37 16 21 N -0.51 -14.87 4.79 -862.25 -4.13 -19.00 16 22 C 0.04 0.80 5.70 86.65 0.49 1.29 16 23 C -0.12 -1.98 7.06 31.80 0.22 -1.75 16 24 C -0.12 -2.44 6.93 31.47 0.22 -2.23 16 25 C 0.03 0.97 5.83 86.44 0.50 1.47 16 26 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.02 1.16 7.80 -2.39 -0.02 1.14 16 28 H 0.05 2.15 5.56 -2.38 -0.01 2.14 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 3.97 5.95 -2.38 -0.01 3.96 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.40 14.40 7.98 -92.71 -0.74 13.66 16 33 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 34 H 0.11 1.66 8.07 -2.39 -0.02 1.64 16 35 H 0.12 1.67 8.14 -2.38 -0.02 1.66 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.09 2.45 7.36 -2.39 -0.02 2.43 16 38 H 0.09 1.66 7.95 -2.39 -0.02 1.65 16 39 H 0.06 0.99 8.02 -2.38 -0.02 0.97 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.04 1.02 7.65 -2.39 -0.02 1.00 16 45 H 0.05 1.79 7.97 -2.39 -0.02 1.77 16 Total: -1.00 -67.22 350.57 0.24 -66.98 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.22 Total: 31.66 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.06 Total: -11.08 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -6.03 Total: -103.51 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.04 Total: -28.30 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.22 0.24 -66.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132077741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.139 kcal (2) G-P(sol) polarization free energy of solvation -67.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds