Wall clock time and date at job start Tue Mar 31 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47338 * 2 1 4 4 H 1.08997 * 109.47503 * 305.00315 * 3 2 1 5 5 C 1.50701 * 109.46998 * 184.99783 * 3 2 1 6 6 H 1.07997 * 120.00245 * 240.00036 * 5 3 2 7 7 C 1.37877 * 119.99582 * 59.73587 * 5 3 2 8 8 N 1.31510 * 120.00352 * 0.26589 * 7 5 3 9 9 Si 1.86797 * 119.99749 * 180.27390 * 7 5 3 10 10 H 1.48499 * 109.47660 * 59.99359 * 9 7 5 11 11 H 1.48505 * 109.47230 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47349 * 299.99403 * 9 7 5 13 13 N 1.46504 * 109.46749 * 65.00476 * 3 2 1 14 14 C 1.34776 * 119.99763 * 274.99882 * 13 3 2 15 15 O 1.21278 * 119.99986 * 354.74752 * 14 13 3 16 16 C 1.50704 * 120.00115 * 174.75249 * 14 13 3 17 17 H 1.08996 * 109.46663 * 32.94739 * 16 14 13 18 18 C 1.52995 * 109.47009 * 272.94921 * 16 14 13 19 19 C 1.53000 * 117.49925 * 131.77342 * 18 16 14 20 20 C 1.53001 * 117.49884 * 63.11273 * 18 16 14 21 21 N 1.46897 * 109.47412 * 152.94961 * 16 14 13 22 22 C 1.48528 * 111.00301 * 177.60361 * 21 16 14 23 23 C 1.54939 * 103.22826 * 159.71874 * 22 21 16 24 24 C 1.54595 * 102.92479 * 322.58667 * 23 22 21 25 25 C 1.47902 * 111.00022 * 295.00025 * 21 16 14 26 26 H 1.09004 * 109.47351 * 59.99277 * 1 2 3 27 27 H 1.08999 * 109.47385 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46936 * 299.99783 * 1 2 3 29 29 H 1.09005 * 109.46936 * 240.00217 * 2 1 3 30 30 H 1.08995 * 109.47231 * 120.00964 * 2 1 3 31 31 H 0.96999 * 120.00120 * 180.02562 * 8 7 5 32 32 H 0.96994 * 120.00195 * 94.99985 * 13 3 2 33 33 H 1.09004 * 115.55023 * 277.44309 * 18 16 14 34 34 H 1.09003 * 117.49875 * 359.97438 * 19 18 16 35 35 H 1.08997 * 117.49899 * 145.02210 * 19 18 16 36 36 H 1.08998 * 117.50185 * 214.97735 * 20 18 16 37 37 H 1.09001 * 117.49960 * 359.97438 * 20 18 16 38 38 H 1.08999 * 110.66612 * 278.15656 * 22 21 16 39 39 H 1.09004 * 110.66561 * 41.28559 * 22 21 16 40 40 H 1.08996 * 110.72309 * 204.22656 * 23 22 21 41 41 H 1.09000 * 110.72175 * 80.94613 * 23 22 21 42 42 H 1.08994 * 110.31036 * 263.04459 * 24 23 22 43 43 H 1.08996 * 110.31081 * 140.87066 * 24 23 22 44 44 H 1.09004 * 109.91683 * 333.50964 * 25 21 16 45 45 H 1.08999 * 109.91945 * 94.60387 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1435 0.8733 -1.2253 8 7 3.4064 0.3320 -2.1704 9 14 6.0054 0.8686 -1.3751 10 1 6.5928 0.1353 -0.2252 11 1 6.3985 0.1996 -2.6413 12 1 6.5054 2.2670 -1.3778 13 7 1.6525 2.0973 1.2519 14 6 0.4353 2.6643 1.3671 15 8 -0.3027 2.7166 0.4061 16 6 -0.0089 3.2332 2.6901 17 1 0.8542 3.6349 3.2209 18 6 -0.6550 2.1289 3.5290 19 6 -0.1985 1.9872 4.9824 20 6 0.2262 0.9481 3.9417 21 7 -0.9846 4.3066 2.4587 22 6 -1.4890 4.8537 3.7442 23 6 -2.0449 6.2435 3.3442 24 6 -1.0330 6.7277 2.2805 25 6 -0.3610 5.4467 1.7524 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8898 31 1 3.8296 -0.0699 -2.9452 32 1 2.2720 2.1229 1.9978 33 1 -1.7022 1.9223 3.3080 34 1 0.5625 2.6805 5.3408 35 1 -0.9452 1.6870 5.7175 36 1 -0.2413 -0.0352 3.9926 37 1 1.2661 0.9579 3.6151 38 1 -2.2822 4.2231 4.1458 39 1 -0.6766 4.9568 4.4636 40 1 -2.0547 6.9163 4.2017 41 1 -3.0421 6.1508 2.9140 42 1 -0.2911 7.3841 2.7352 43 1 -1.5513 7.2437 1.4724 44 1 0.7081 5.4742 1.9632 45 1 -0.5252 5.3532 0.6789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132077939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:37 Heat of formation + Delta-G solvation = -11.945664 kcal Electronic energy + Delta-G solvation = -23470.820812 eV Core-core repulsion = 20295.780173 eV Total energy + Delta-G solvation = -3175.040639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.96988 -37.97552 -36.74064 -34.94599 -32.29750 -31.87531 -30.74987 -28.81140 -27.41765 -26.06821 -23.07188 -22.32699 -21.72055 -21.22688 -20.40085 -19.60913 -19.26162 -17.11939 -16.51782 -16.02038 -15.45232 -15.28031 -14.64641 -14.61723 -14.04221 -13.79146 -13.59089 -13.08255 -12.68100 -12.51058 -12.24986 -12.11352 -11.97123 -11.53047 -11.42834 -11.29824 -11.22553 -11.11371 -10.97902 -10.96326 -10.78717 -10.54758 -10.37540 -10.25911 -10.19843 -10.09606 -9.59093 -9.01816 -8.76372 -8.46027 -8.21740 -7.72655 -6.09738 -4.19120 3.25895 3.31534 3.32306 3.40561 3.76687 3.85062 4.30435 4.45906 4.65458 4.79273 4.88041 4.96851 5.00488 5.10581 5.21322 5.26743 5.31261 5.50207 5.56239 5.62297 5.68343 5.77001 5.79916 5.83494 5.97246 6.04336 6.11636 6.14078 6.27966 6.28699 6.43362 6.51124 6.71041 6.99740 7.05464 7.09606 7.26301 7.42065 7.53380 7.65662 7.78969 7.95179 8.22408 8.74087 8.83360 9.24362 9.48901 10.95355 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019939 B = 0.004989 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.973428 B = 5611.129061 C = 6080.481834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.711 5.711 14 C 0.512 3.488 15 O -0.528 6.528 16 C 0.090 3.910 17 H 0.052 0.948 18 C -0.136 4.136 19 C -0.180 4.180 20 C -0.169 4.169 21 N -0.489 5.489 22 C 0.039 3.961 23 C -0.123 4.123 24 C -0.129 4.129 25 C 0.036 3.964 26 H 0.048 0.952 27 H 0.022 0.978 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.383 0.617 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.040 0.960 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 7.031 13.772 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.359 5.359 14 C 0.295 3.705 15 O -0.404 6.404 16 C -0.022 4.022 17 H 0.070 0.930 18 C -0.155 4.155 19 C -0.217 4.217 20 C -0.206 4.206 21 N -0.214 5.214 22 C -0.089 4.089 23 C -0.161 4.161 24 C -0.167 4.167 25 C -0.092 4.092 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.215 0.785 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.054 6.711 12.530 16.337 hybrid contribution 2.086 0.205 0.742 2.223 sum -5.968 6.916 13.272 16.112 Atomic orbital electron populations 1.21823 0.98402 0.98076 1.01251 1.21913 0.92562 0.99839 1.02141 1.18730 0.93992 0.89068 0.81133 0.93356 1.21193 0.90828 1.38863 1.06321 0.92343 1.24868 0.98437 0.94861 0.95412 1.69883 1.35127 1.37478 1.09422 0.86550 0.85084 0.78252 0.77435 1.20218 1.21135 1.20262 1.46517 1.14485 1.56576 1.18364 1.19951 0.82527 0.79106 0.88877 1.90659 1.53629 1.57132 1.39021 1.21427 0.93441 0.92500 0.94832 0.93012 1.22007 1.00312 0.97818 0.95333 1.23073 1.03575 1.03228 0.91872 1.23005 1.00903 0.94277 1.02436 1.64570 1.32815 1.07210 1.16771 1.23206 0.99139 0.95276 0.91286 1.22472 0.99520 0.95810 0.98301 1.22390 0.98345 0.97178 0.98837 1.22879 0.96417 0.89097 1.00769 0.93318 0.95897 0.94036 0.88416 0.95121 0.92550 0.78484 0.86718 0.89087 0.88779 0.88485 0.88229 0.90017 0.94022 0.91327 0.90732 0.91771 0.91011 0.94126 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.59 37.16 0.32 -2.79 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.83 2.25 -69.08 -0.16 6.68 16 4 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.73 11.28 55.43 0.63 -24.10 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.71 -14.67 4.73 -54.93 -0.26 -14.93 16 14 C 0.51 10.22 4.46 -10.98 -0.05 10.17 16 15 O -0.53 -12.60 13.82 5.56 0.08 -12.52 16 16 C 0.09 1.40 1.77 -68.87 -0.12 1.28 16 17 H 0.05 0.75 7.74 -51.93 -0.40 0.35 16 18 C -0.14 -1.85 4.25 -90.62 -0.39 -2.24 16 19 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 20 C -0.17 -2.17 9.96 -26.69 -0.27 -2.43 16 21 N -0.49 -7.36 4.79 -223.89 -1.07 -8.43 16 22 C 0.04 0.45 5.72 -1.90 -0.01 0.43 16 23 C -0.12 -1.24 7.06 -24.87 -0.18 -1.41 16 24 C -0.13 -1.44 6.93 -25.37 -0.18 -1.61 16 25 C 0.04 0.53 5.83 -2.75 -0.02 0.51 16 26 H 0.05 1.18 7.92 -51.93 -0.41 0.77 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.90 5.76 -51.93 -0.30 0.61 16 29 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.38 7.02 7.98 -40.82 -0.33 6.70 16 33 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 34 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.37 7.28 -51.93 -0.38 0.99 16 38 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 39 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 45 H 0.09 1.50 7.97 -51.93 -0.41 1.08 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -29.64 351.05 -10.13 -39.77 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.92 Total: 8.77 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.85 Total: -9.44 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.71 Total: -47.46 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.64 -10.13 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132077939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.823 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds