Wall clock time and date at job start Tue Mar 31 2020 01:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47338 * 2 1 4 4 H 1.08997 * 109.47503 * 305.00315 * 3 2 1 5 5 C 1.50701 * 109.46998 * 184.99783 * 3 2 1 6 6 H 1.07997 * 120.00245 * 240.00036 * 5 3 2 7 7 C 1.37877 * 119.99582 * 59.73587 * 5 3 2 8 8 N 1.31510 * 120.00352 * 0.26589 * 7 5 3 9 9 Si 1.86797 * 119.99749 * 180.27390 * 7 5 3 10 10 H 1.48499 * 109.47660 * 59.99359 * 9 7 5 11 11 H 1.48505 * 109.47230 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47349 * 299.99403 * 9 7 5 13 13 N 1.46504 * 109.46749 * 65.00476 * 3 2 1 14 14 C 1.34776 * 119.99763 * 274.99882 * 13 3 2 15 15 O 1.21278 * 119.99986 * 354.74752 * 14 13 3 16 16 C 1.50704 * 120.00115 * 174.75249 * 14 13 3 17 17 H 1.08996 * 109.46663 * 32.94739 * 16 14 13 18 18 C 1.52995 * 109.47009 * 272.94921 * 16 14 13 19 19 C 1.53000 * 117.49925 * 131.77342 * 18 16 14 20 20 C 1.53001 * 117.49884 * 63.11273 * 18 16 14 21 21 N 1.46897 * 109.47412 * 152.94961 * 16 14 13 22 22 C 1.48528 * 111.00301 * 177.60361 * 21 16 14 23 23 C 1.54939 * 103.22826 * 159.71874 * 22 21 16 24 24 C 1.54595 * 102.92479 * 322.58667 * 23 22 21 25 25 C 1.47902 * 111.00022 * 295.00025 * 21 16 14 26 26 H 1.09004 * 109.47351 * 59.99277 * 1 2 3 27 27 H 1.08999 * 109.47385 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46936 * 299.99783 * 1 2 3 29 29 H 1.09005 * 109.46936 * 240.00217 * 2 1 3 30 30 H 1.08995 * 109.47231 * 120.00964 * 2 1 3 31 31 H 0.96999 * 120.00120 * 180.02562 * 8 7 5 32 32 H 0.96994 * 120.00195 * 94.99985 * 13 3 2 33 33 H 1.09004 * 115.55023 * 277.44309 * 18 16 14 34 34 H 1.09003 * 117.49875 * 359.97438 * 19 18 16 35 35 H 1.08997 * 117.49899 * 145.02210 * 19 18 16 36 36 H 1.08998 * 117.50185 * 214.97735 * 20 18 16 37 37 H 1.09001 * 117.49960 * 359.97438 * 20 18 16 38 38 H 1.08999 * 110.66612 * 278.15656 * 22 21 16 39 39 H 1.09004 * 110.66561 * 41.28559 * 22 21 16 40 40 H 1.08996 * 110.72309 * 204.22656 * 23 22 21 41 41 H 1.09000 * 110.72175 * 80.94613 * 23 22 21 42 42 H 1.08994 * 110.31036 * 263.04459 * 24 23 22 43 43 H 1.08996 * 110.31081 * 140.87066 * 24 23 22 44 44 H 1.09004 * 109.91683 * 333.50964 * 25 21 16 45 45 H 1.08999 * 109.91945 * 94.60387 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1435 0.8733 -1.2253 8 7 3.4064 0.3320 -2.1704 9 14 6.0054 0.8686 -1.3751 10 1 6.5928 0.1353 -0.2252 11 1 6.3985 0.1996 -2.6413 12 1 6.5054 2.2670 -1.3778 13 7 1.6525 2.0973 1.2519 14 6 0.4353 2.6643 1.3671 15 8 -0.3027 2.7166 0.4061 16 6 -0.0089 3.2332 2.6901 17 1 0.8542 3.6349 3.2209 18 6 -0.6550 2.1289 3.5290 19 6 -0.1985 1.9872 4.9824 20 6 0.2262 0.9481 3.9417 21 7 -0.9846 4.3066 2.4587 22 6 -1.4890 4.8537 3.7442 23 6 -2.0449 6.2435 3.3442 24 6 -1.0330 6.7277 2.2805 25 6 -0.3610 5.4467 1.7524 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8898 31 1 3.8296 -0.0699 -2.9452 32 1 2.2720 2.1229 1.9978 33 1 -1.7022 1.9223 3.3080 34 1 0.5625 2.6805 5.3408 35 1 -0.9452 1.6870 5.7175 36 1 -0.2413 -0.0352 3.9926 37 1 1.2661 0.9579 3.6151 38 1 -2.2822 4.2231 4.1458 39 1 -0.6766 4.9568 4.4636 40 1 -2.0547 6.9163 4.2017 41 1 -3.0421 6.1508 2.9140 42 1 -0.2911 7.3841 2.7352 43 1 -1.5513 7.2437 1.4724 44 1 0.7081 5.4742 1.9632 45 1 -0.5252 5.3532 0.6789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132077939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:36 Heat of formation + Delta-G solvation = -31.034428 kcal Electronic energy + Delta-G solvation = -23471.648563 eV Core-core repulsion = 20295.780173 eV Total energy + Delta-G solvation = -3175.868390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33232 -39.35936 -37.77812 -36.84066 -34.24398 -33.13379 -32.46557 -29.80023 -29.20448 -27.48620 -24.98784 -23.33115 -22.89934 -22.39825 -21.58415 -21.11425 -20.90173 -18.84504 -17.81127 -17.34648 -17.10390 -16.71091 -16.22253 -15.96367 -15.44792 -15.15584 -14.76271 -14.58165 -14.45539 -13.93865 -13.47052 -13.41053 -13.30212 -13.21668 -13.05880 -12.87785 -12.66342 -12.38708 -12.21534 -12.18093 -12.12503 -12.07117 -11.99476 -11.58978 -11.46270 -11.36875 -11.19428 -11.04826 -10.55886 -10.28136 -9.58798 -9.34410 -8.15410 -6.33132 1.43697 1.45407 1.53251 1.87579 2.31241 2.51521 2.78803 3.12938 3.20057 3.68303 3.77334 3.89440 3.98032 4.01035 4.03831 4.13920 4.29441 4.37478 4.48898 4.56577 4.57998 4.64113 4.74183 4.78315 4.81734 4.93408 5.00509 5.02587 5.08020 5.08499 5.19698 5.23029 5.26023 5.27095 5.32642 5.44770 5.56765 5.65329 5.80044 5.87577 5.96244 6.06240 6.18653 6.75040 7.05492 7.34512 7.65426 8.89532 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019939 B = 0.004989 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.973428 B = 5611.129061 C = 6080.481834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.117 4.117 3 C 0.282 3.718 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.706 5.706 14 C 0.509 3.491 15 O -0.573 6.573 16 C 0.104 3.896 17 H 0.068 0.932 18 C -0.154 4.154 19 C -0.141 4.141 20 C -0.182 4.182 21 N -0.513 5.513 22 C 0.040 3.960 23 C -0.116 4.116 24 C -0.123 4.123 25 C 0.033 3.967 26 H 0.019 0.981 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.397 0.603 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 7.706 17.080 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.156 4.156 3 C 0.179 3.821 4 H 0.011 0.989 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.355 5.355 14 C 0.295 3.705 15 O -0.452 6.452 16 C -0.008 4.008 17 H 0.085 0.915 18 C -0.173 4.173 19 C -0.178 4.178 20 C -0.220 4.220 21 N -0.238 5.238 22 C -0.087 4.087 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.095 4.095 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.573 7.399 15.890 19.094 hybrid contribution 1.885 0.008 -0.327 1.913 sum -5.688 7.408 15.562 18.150 Atomic orbital electron populations 1.21647 0.97169 0.99127 1.00063 1.21737 0.93531 0.99085 1.01209 1.18291 0.93457 0.89062 0.81339 0.98926 1.21531 0.91475 1.38850 1.06788 0.91321 1.25749 1.03214 0.94372 0.94986 1.70046 1.37096 1.38206 1.09934 0.85456 0.79231 0.78365 0.77616 1.18831 1.21167 1.19817 1.46285 1.15378 1.56542 1.17331 1.20840 0.81446 0.77906 0.90277 1.90638 1.54744 1.58690 1.41176 1.21268 0.94406 0.93312 0.91835 0.91466 1.21911 0.99664 0.97872 0.97834 1.23168 1.03320 1.01124 0.90169 1.23049 1.00109 0.94694 1.04134 1.64491 1.32757 1.07359 1.19227 1.23305 0.99678 0.95934 0.89753 1.22491 0.98695 0.95451 0.98793 1.22372 0.98925 0.95464 0.99370 1.22825 0.96565 0.91231 0.98846 0.96130 0.93556 0.93531 0.91185 0.93922 0.92633 0.76860 0.87777 0.87600 0.86459 0.88155 0.89274 0.89232 0.92495 0.88376 0.91092 0.89876 0.90875 0.94746 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.59 71.98 0.62 -5.07 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.67 16 3 C 0.28 14.72 2.25 44.24 0.10 14.82 16 4 H -0.01 -0.45 7.51 -2.39 -0.02 -0.47 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -52.95 11.28 21.45 0.24 -52.71 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 N -0.71 -29.79 4.73 -446.10 -2.11 -31.90 16 14 C 0.51 20.90 4.46 87.66 0.39 21.29 16 15 O -0.57 -28.90 13.82 -3.02 -0.04 -28.95 16 16 C 0.10 3.15 1.77 44.17 0.08 3.23 16 17 H 0.07 1.81 7.74 -2.39 -0.02 1.80 16 18 C -0.15 -3.92 4.25 -10.79 -0.05 -3.96 16 19 C -0.14 -2.47 10.18 30.62 0.31 -2.16 16 20 C -0.18 -4.31 9.96 30.62 0.30 -4.01 16 21 N -0.51 -15.13 4.79 -862.24 -4.13 -19.26 16 22 C 0.04 0.81 5.72 86.65 0.50 1.31 16 23 C -0.12 -2.01 7.06 31.80 0.22 -1.79 16 24 C -0.12 -2.54 6.93 31.47 0.22 -2.33 16 25 C 0.03 0.99 5.83 86.45 0.50 1.50 16 26 H 0.02 1.02 7.92 -2.39 -0.02 1.00 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 2.08 5.76 -2.38 -0.01 2.07 16 29 H 0.07 3.93 5.94 -2.38 -0.01 3.91 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.40 14.47 7.98 -92.71 -0.74 13.73 16 33 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.11 1.60 8.07 -2.39 -0.02 1.58 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.09 2.30 7.28 -2.39 -0.02 2.28 16 38 H 0.09 1.68 7.95 -2.39 -0.02 1.67 16 39 H 0.06 1.00 8.02 -2.39 -0.02 0.98 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.03 1.03 7.65 -2.38 -0.02 1.01 16 45 H 0.05 1.76 7.97 -2.39 -0.02 1.74 16 Total: -1.00 -67.86 351.05 0.24 -67.61 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.22 Total: 31.39 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 4.04 Total: -10.57 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -6.00 Total: -103.86 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.04 Total: -28.95 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -67.86 0.24 -67.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132077939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.580 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds