Wall clock time and date at job start Tue Mar 31 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 N 1.46895 * 109.47166 * 125.36112 * 3 2 1 5 5 C 1.46897 * 110.99888 * 173.05282 * 4 3 2 6 6 C 1.50696 * 109.47772 * 287.83505 * 5 4 3 7 7 H 1.08004 * 119.99511 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00360 * 179.72073 * 6 5 4 9 9 N 1.31505 * 119.99973 * 180.27776 * 8 6 5 10 10 Si 1.86801 * 119.99722 * 0.28224 * 8 6 5 11 11 H 1.48496 * 109.47278 * 89.99729 * 10 8 6 12 12 H 1.48505 * 109.46826 * 209.99615 * 10 8 6 13 13 H 1.48500 * 109.46963 * 329.99309 * 10 8 6 14 14 C 1.46900 * 111.00432 * 297.01290 * 4 3 2 15 15 H 1.08998 * 109.39871 * 42.60849 * 14 4 3 16 16 C 1.53065 * 109.40129 * 162.43563 * 14 4 3 17 17 C 1.53349 * 108.42615 * 169.03064 * 16 14 4 18 18 C 1.52914 * 108.67144 * 292.46964 * 17 16 14 19 19 N 1.45761 * 110.48935 * 50.75163 * 18 17 16 20 20 C 1.46503 * 117.94379 * 160.92540 * 19 18 17 21 21 C 1.52996 * 109.46914 * 120.00169 * 20 19 18 22 22 C 1.52997 * 109.46758 * 239.99770 * 20 19 18 23 23 C 1.33346 * 124.10462 * 340.92208 * 19 18 17 24 24 O 1.21278 * 118.24589 * 182.22365 * 23 19 18 25 25 H 1.08002 * 120.00139 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00150 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99434 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46918 * 5.36201 * 3 2 1 29 29 H 1.08993 * 109.46718 * 245.36568 * 3 2 1 30 30 H 1.09004 * 109.46916 * 167.83626 * 5 4 3 31 31 H 1.09001 * 109.46952 * 47.84394 * 5 4 3 32 32 H 0.97005 * 119.99814 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.67411 * 288.76219 * 16 14 4 34 34 H 1.08999 * 109.67965 * 49.25807 * 16 14 4 35 35 H 1.09001 * 109.59968 * 52.22399 * 17 16 14 36 36 H 1.08998 * 109.60574 * 172.70915 * 17 16 14 37 37 H 1.09004 * 109.30371 * 171.06565 * 18 17 16 38 38 H 1.09001 * 109.30179 * 290.64694 * 18 17 16 39 39 H 1.08997 * 109.47403 * 359.97438 * 20 19 18 40 40 H 1.09005 * 109.47740 * 59.99603 * 21 20 19 41 41 H 1.08999 * 109.47157 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47450 * 299.99436 * 21 20 19 43 43 H 1.08998 * 109.47483 * 60.00294 * 22 20 19 44 44 H 1.08999 * 109.46899 * 180.02562 * 22 20 19 45 45 H 1.08997 * 109.47131 * 300.00127 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0025 1.3284 1.1294 5 6 3.8705 2.5119 1.0681 6 6 4.8665 2.3471 -0.0507 7 1 4.8556 1.4527 -0.6560 8 6 5.7877 3.3408 -0.3056 9 7 6.6533 3.1993 -1.2854 10 14 5.8062 4.8880 0.7410 11 1 6.7114 4.6899 1.9014 12 1 6.2895 6.0313 -0.0743 13 1 4.4324 5.1728 1.2277 14 6 2.2866 1.2663 2.4107 15 1 1.4851 0.5309 2.3423 16 6 3.2604 0.8554 3.5179 17 6 2.5706 1.0627 4.8716 18 6 2.3684 2.5621 5.0936 19 7 1.7283 3.1679 3.9326 20 6 1.0750 4.4673 4.1090 21 6 1.7293 5.4966 3.1854 22 6 -0.4101 4.3426 3.7627 23 6 1.7001 2.6136 2.7202 24 8 1.1726 3.2306 1.8191 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3591 2.1313 0.0960 29 1 2.6162 1.4055 -0.9341 30 1 4.4013 2.6225 2.0137 31 1 3.2633 3.3987 0.8865 32 1 7.3017 3.8983 -1.4645 33 1 3.5287 -0.1945 3.3996 34 1 4.1579 1.4717 3.4646 35 1 1.6036 0.5595 4.8701 36 1 3.1957 0.6563 5.6667 37 1 1.7409 2.7149 5.9717 38 1 3.3364 3.0361 5.2557 39 1 1.1803 4.7893 5.1450 40 1 1.6237 5.1744 2.1494 41 1 1.2430 6.4633 3.3162 42 1 2.7874 5.5855 3.4321 43 1 -0.8763 3.6093 4.4207 44 1 -0.8960 5.3094 3.8935 45 1 -0.5157 4.0204 2.7268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292083932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:47 Heat of formation + Delta-G solvation = -1.809120 kcal Electronic energy + Delta-G solvation = -24300.870772 eV Core-core repulsion = 21126.269686 eV Total energy + Delta-G solvation = -3174.601086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80666 -37.29043 -36.22387 -34.46982 -33.11875 -32.06849 -30.56362 -28.95059 -27.42753 -27.01162 -24.72726 -23.42191 -22.88395 -21.14351 -20.35858 -19.30579 -18.00184 -16.99757 -16.58358 -15.82677 -15.47930 -15.00715 -14.68636 -14.23449 -13.94802 -13.79182 -13.70745 -13.51965 -13.35565 -12.86896 -12.71977 -12.40351 -12.10996 -11.84241 -11.76159 -11.58880 -11.55388 -11.17406 -11.05348 -10.93228 -10.83457 -10.60711 -10.57047 -10.38629 -10.06812 -9.89649 -9.38798 -9.18594 -8.89636 -8.52255 -8.47560 -7.26247 -6.01942 -3.98017 2.66984 3.02421 3.18949 3.28825 3.37224 3.43024 4.45392 4.60507 4.71451 4.83151 4.99518 5.06673 5.17382 5.24431 5.30643 5.31564 5.44502 5.47415 5.61597 5.66592 5.69353 5.76141 5.81557 5.85951 5.91675 5.93115 6.09057 6.16762 6.26134 6.35880 6.46995 6.52991 6.55693 6.61699 6.83501 6.85869 7.07302 7.08890 7.22932 7.63320 7.73026 7.88092 8.03312 8.54976 8.69640 9.07443 9.60410 11.11214 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.008400 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.671894 B = 3332.484704 C = 4210.910137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.126 4.126 3 C 0.068 3.932 4 N -0.493 5.493 5 C 0.155 3.845 6 C -0.504 4.504 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.901 5.901 10 Si 0.867 3.133 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.264 1.264 14 C 0.069 3.931 15 H 0.102 0.898 16 C -0.115 4.115 17 C -0.133 4.133 18 C 0.114 3.886 19 N -0.605 5.605 20 C 0.140 3.860 21 C -0.173 4.173 22 C -0.166 4.166 23 C 0.496 3.504 24 O -0.537 6.537 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.019 0.981 31 H 0.007 0.993 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 -2.142 14.409 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.145 4.145 3 C -0.059 4.059 4 N -0.215 5.215 5 C 0.029 3.971 6 C -0.543 4.543 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.540 5.540 10 Si 0.694 3.306 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.188 1.188 14 C -0.043 4.043 15 H 0.119 0.881 16 C -0.153 4.153 17 C -0.171 4.171 18 C -0.009 4.009 19 N -0.340 5.340 20 C 0.036 3.964 21 C -0.230 4.230 22 C -0.224 4.224 23 C 0.284 3.716 24 O -0.414 6.414 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.037 0.963 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.756 -2.156 13.776 18.238 hybrid contribution -0.211 1.632 0.726 1.799 sum -11.966 -0.524 14.502 18.809 Atomic orbital electron populations 1.23757 0.96064 1.01060 1.04302 1.23150 0.95397 0.99412 0.96519 1.21463 0.94733 0.94003 0.95745 1.62448 1.17857 1.42927 0.98317 1.20317 0.92095 0.87112 0.97539 1.21001 1.13561 1.05304 1.14399 0.90093 1.24845 0.95369 0.97853 0.95059 1.69887 1.19639 1.34217 1.30243 0.86969 0.78913 0.83867 0.80814 1.20373 1.21226 1.18828 1.21883 0.96716 0.92501 0.93239 0.88069 1.21725 0.98736 1.03357 0.91531 1.21878 1.01715 0.94715 0.98827 1.21404 0.97593 0.94101 0.87826 1.47692 1.55902 1.20750 1.09687 1.20991 0.92742 0.83503 0.99118 1.22267 0.99932 0.97592 1.03248 1.22172 0.94685 1.01324 1.04197 1.21637 0.78942 0.89529 0.81477 1.90538 1.44784 1.62595 1.43478 0.89218 0.88947 0.87500 0.91834 0.88867 0.96293 0.97482 0.92752 0.90108 0.90363 0.91257 0.89825 0.91196 0.92043 0.90496 0.89341 0.92494 0.93129 0.93296 0.92326 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.13 14.30 29.01 0.41 -2.71 16 2 C -0.13 -2.10 8.27 -36.03 -0.30 -2.39 16 3 C 0.07 1.38 5.07 -4.98 -0.03 1.35 16 4 N -0.49 -10.36 4.36 -231.19 -1.01 -11.37 16 5 C 0.16 3.84 2.69 -4.98 -0.01 3.82 16 6 C -0.50 -14.54 9.06 -34.44 -0.31 -14.85 16 7 H 0.08 2.53 7.80 -52.48 -0.41 2.12 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 10 Si 0.87 22.13 27.47 -169.99 -4.67 17.46 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 13 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 14 C 0.07 1.19 2.31 -69.09 -0.16 1.03 16 15 H 0.10 1.63 6.71 -51.93 -0.35 1.28 16 16 C -0.12 -1.67 5.50 -26.52 -0.15 -1.82 16 17 C -0.13 -1.40 6.02 -26.59 -0.16 -1.56 16 18 C 0.11 1.28 6.25 -4.48 -0.03 1.25 16 19 N -0.61 -8.91 2.79 -167.38 -0.47 -9.38 16 20 C 0.14 1.90 3.21 -67.93 -0.22 1.68 16 21 C -0.17 -2.74 9.08 37.16 0.34 -2.40 16 22 C -0.17 -2.13 9.08 37.16 0.34 -1.80 16 23 C 0.50 8.81 5.35 -11.88 -0.06 8.75 16 24 O -0.54 -10.95 8.50 5.56 0.05 -10.90 16 25 H 0.09 1.11 8.06 -52.49 -0.42 0.68 16 26 H 0.09 1.41 7.84 -52.49 -0.41 0.99 16 27 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.06 1.37 5.40 -51.93 -0.28 1.09 16 29 H 0.09 2.13 7.16 -51.93 -0.37 1.75 16 30 H 0.02 0.47 5.74 -51.93 -0.30 0.18 16 31 H 0.01 0.20 5.64 -51.93 -0.29 -0.09 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.31 6.41 -51.93 -0.33 0.98 16 35 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 40 H 0.09 1.73 5.84 -51.93 -0.30 1.43 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.30 6.00 -51.93 -0.31 0.99 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -32.18 339.39 -8.22 -40.40 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.58 Total: 3.57 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.43 Total: -7.67 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.70 Total: -47.96 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.05 Total: -10.90 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.18 -8.22 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292083932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.588 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds