Wall clock time and date at job start Tue Mar 31 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 N 1.46895 * 109.47166 * 125.36112 * 3 2 1 5 5 C 1.46897 * 110.99888 * 173.05282 * 4 3 2 6 6 C 1.50696 * 109.47772 * 287.83505 * 5 4 3 7 7 H 1.08004 * 119.99511 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00360 * 179.72073 * 6 5 4 9 9 N 1.31505 * 119.99973 * 180.27776 * 8 6 5 10 10 Si 1.86801 * 119.99722 * 0.28224 * 8 6 5 11 11 H 1.48496 * 109.47278 * 89.99729 * 10 8 6 12 12 H 1.48505 * 109.46826 * 209.99615 * 10 8 6 13 13 H 1.48500 * 109.46963 * 329.99309 * 10 8 6 14 14 C 1.46900 * 111.00432 * 297.01290 * 4 3 2 15 15 H 1.08998 * 109.39871 * 42.60849 * 14 4 3 16 16 C 1.53065 * 109.40129 * 162.43563 * 14 4 3 17 17 C 1.53349 * 108.42615 * 169.03064 * 16 14 4 18 18 C 1.52914 * 108.67144 * 292.46964 * 17 16 14 19 19 N 1.45761 * 110.48935 * 50.75163 * 18 17 16 20 20 C 1.46503 * 117.94379 * 160.92540 * 19 18 17 21 21 C 1.52996 * 109.46914 * 120.00169 * 20 19 18 22 22 C 1.52997 * 109.46758 * 239.99770 * 20 19 18 23 23 C 1.33346 * 124.10462 * 340.92208 * 19 18 17 24 24 O 1.21278 * 118.24589 * 182.22365 * 23 19 18 25 25 H 1.08002 * 120.00139 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00150 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99434 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46918 * 5.36201 * 3 2 1 29 29 H 1.08993 * 109.46718 * 245.36568 * 3 2 1 30 30 H 1.09004 * 109.46916 * 167.83626 * 5 4 3 31 31 H 1.09001 * 109.46952 * 47.84394 * 5 4 3 32 32 H 0.97005 * 119.99814 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.67411 * 288.76219 * 16 14 4 34 34 H 1.08999 * 109.67965 * 49.25807 * 16 14 4 35 35 H 1.09001 * 109.59968 * 52.22399 * 17 16 14 36 36 H 1.08998 * 109.60574 * 172.70915 * 17 16 14 37 37 H 1.09004 * 109.30371 * 171.06565 * 18 17 16 38 38 H 1.09001 * 109.30179 * 290.64694 * 18 17 16 39 39 H 1.08997 * 109.47403 * 359.97438 * 20 19 18 40 40 H 1.09005 * 109.47740 * 59.99603 * 21 20 19 41 41 H 1.08999 * 109.47157 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47450 * 299.99436 * 21 20 19 43 43 H 1.08998 * 109.47483 * 60.00294 * 22 20 19 44 44 H 1.08999 * 109.46899 * 180.02562 * 22 20 19 45 45 H 1.08997 * 109.47131 * 300.00127 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0025 1.3284 1.1294 5 6 3.8705 2.5119 1.0681 6 6 4.8665 2.3471 -0.0507 7 1 4.8556 1.4527 -0.6560 8 6 5.7877 3.3408 -0.3056 9 7 6.6533 3.1993 -1.2854 10 14 5.8062 4.8880 0.7410 11 1 6.7114 4.6899 1.9014 12 1 6.2895 6.0313 -0.0743 13 1 4.4324 5.1728 1.2277 14 6 2.2866 1.2663 2.4107 15 1 1.4851 0.5309 2.3423 16 6 3.2604 0.8554 3.5179 17 6 2.5706 1.0627 4.8716 18 6 2.3684 2.5621 5.0936 19 7 1.7283 3.1679 3.9326 20 6 1.0750 4.4673 4.1090 21 6 1.7293 5.4966 3.1854 22 6 -0.4101 4.3426 3.7627 23 6 1.7001 2.6136 2.7202 24 8 1.1726 3.2306 1.8191 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3591 2.1313 0.0960 29 1 2.6162 1.4055 -0.9341 30 1 4.4013 2.6225 2.0137 31 1 3.2633 3.3987 0.8865 32 1 7.3017 3.8983 -1.4645 33 1 3.5287 -0.1945 3.3996 34 1 4.1579 1.4717 3.4646 35 1 1.6036 0.5595 4.8701 36 1 3.1957 0.6563 5.6667 37 1 1.7409 2.7149 5.9717 38 1 3.3364 3.0361 5.2557 39 1 1.1803 4.7893 5.1450 40 1 1.6237 5.1744 2.1494 41 1 1.2430 6.4633 3.3162 42 1 2.7874 5.5855 3.4321 43 1 -0.8763 3.6093 4.4207 44 1 -0.8960 5.3094 3.8935 45 1 -0.5157 4.0204 2.7268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292083932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:46 Heat of formation + Delta-G solvation = -23.726316 kcal Electronic energy + Delta-G solvation = -24301.821173 eV Core-core repulsion = 21126.269686 eV Total energy + Delta-G solvation = -3175.551487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08668 -38.74838 -37.42878 -35.71086 -35.04098 -33.78964 -31.77761 -30.41424 -29.13768 -28.14136 -26.17717 -24.89972 -24.21168 -22.53500 -21.75612 -20.67248 -19.29164 -19.09189 -17.81103 -17.07626 -16.99674 -16.45615 -16.18356 -15.79975 -15.43876 -15.13146 -15.05176 -14.77199 -14.57612 -14.51066 -14.05713 -13.94072 -13.56997 -13.25499 -13.02543 -12.98337 -12.80888 -12.68495 -12.52842 -12.22250 -12.15975 -12.07048 -11.96481 -11.82642 -11.65277 -11.60976 -11.40622 -10.84491 -10.65791 -10.24833 -9.62453 -8.92013 -8.33943 -6.35114 1.21727 1.26066 1.36821 1.38240 1.69956 2.09413 2.26844 2.98653 3.17194 3.59820 3.84802 3.91858 4.02959 4.04505 4.11154 4.21394 4.28317 4.33466 4.41526 4.54265 4.61049 4.65475 4.70497 4.78849 4.82882 4.86019 4.89470 4.93832 4.99922 5.03345 5.10065 5.14437 5.21121 5.29309 5.33562 5.37645 5.52213 5.70585 5.74719 5.85235 5.93203 6.30000 6.49789 6.63023 6.70037 7.27217 7.29645 8.82781 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.008400 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.671894 B = 3332.484704 C = 4210.910137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.146 4.146 3 C 0.076 3.924 4 N -0.503 5.503 5 C 0.181 3.819 6 C -0.512 4.512 7 H 0.041 0.959 8 C 0.014 3.986 9 N -0.943 5.943 10 Si 0.936 3.064 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.266 1.266 14 C 0.066 3.934 15 H 0.115 0.885 16 C -0.115 4.115 17 C -0.121 4.121 18 C 0.103 3.897 19 N -0.603 5.603 20 C 0.136 3.864 21 C -0.171 4.171 22 C -0.158 4.158 23 C 0.487 3.513 24 O -0.572 6.572 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.022 0.978 31 H -0.017 1.017 32 H 0.267 0.733 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 -2.295 18.327 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.165 4.165 3 C -0.052 4.052 4 N -0.226 5.226 5 C 0.054 3.946 6 C -0.550 4.550 7 H 0.059 0.941 8 C -0.183 4.183 9 N -0.584 5.584 10 Si 0.760 3.240 11 H -0.182 1.182 12 H -0.205 1.205 13 H -0.190 1.190 14 C -0.046 4.046 15 H 0.132 0.868 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.019 4.019 19 N -0.336 5.336 20 C 0.034 3.966 21 C -0.229 4.229 22 C -0.216 4.216 23 C 0.275 3.725 24 O -0.452 6.452 25 H 0.144 0.856 26 H 0.103 0.897 27 H 0.135 0.865 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.001 0.999 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.384 -2.327 17.742 22.345 hybrid contribution 0.223 1.629 -0.544 1.731 sum -13.161 -0.698 17.198 21.667 Atomic orbital electron populations 1.23943 0.95082 1.02335 1.00353 1.22883 0.95982 0.97562 1.00054 1.21272 0.93929 0.96034 0.93920 1.62355 1.18881 1.40723 1.00604 1.19847 0.91341 0.87817 0.95642 1.21239 1.14636 1.03950 1.15175 0.94115 1.25695 0.94932 1.01322 0.96380 1.70026 1.20654 1.35661 1.32068 0.85873 0.78999 0.79521 0.79561 1.18235 1.20498 1.19028 1.22023 0.97582 0.93093 0.91858 0.86774 1.21746 0.97324 1.03137 0.93054 1.21877 1.02561 0.94641 0.96852 1.21773 0.98268 0.94259 0.87574 1.47795 1.55181 1.21021 1.09631 1.21190 0.92675 0.82281 1.00498 1.22222 0.99711 0.99687 1.01255 1.22073 0.94524 1.02726 1.02244 1.21604 0.78999 0.89596 0.82316 1.90548 1.46338 1.63407 1.44927 0.85590 0.89714 0.86512 0.93478 0.93122 0.95984 0.99895 0.92396 0.89307 0.93034 0.89763 0.86600 0.87214 0.91978 0.86476 0.93707 0.90145 0.94453 0.91632 0.90501 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.97 14.30 67.78 0.97 -4.00 16 2 C -0.15 -4.89 8.27 25.64 0.21 -4.68 16 3 C 0.08 3.29 5.07 85.56 0.43 3.72 16 4 N -0.50 -22.05 4.36 -885.35 -3.86 -25.91 16 5 C 0.18 9.33 2.69 85.56 0.23 9.56 16 6 C -0.51 -31.25 9.06 25.60 0.23 -31.02 16 7 H 0.04 2.74 7.80 -2.91 -0.02 2.72 16 8 C 0.01 0.88 5.47 84.66 0.46 1.34 16 9 N -0.94 -60.92 13.96 21.45 0.30 -60.62 16 10 Si 0.94 47.10 27.47 68.60 1.88 48.99 16 11 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.27 -13.36 6.54 99.48 0.65 -12.71 16 14 C 0.07 2.25 2.31 44.03 0.10 2.36 16 15 H 0.11 3.54 6.71 -2.39 -0.02 3.53 16 16 C -0.11 -3.12 5.50 30.73 0.17 -2.95 16 17 C -0.12 -2.05 6.02 30.68 0.18 -1.86 16 18 C 0.10 1.87 6.25 86.49 0.54 2.41 16 19 N -0.60 -16.35 2.79 -802.65 -2.24 -18.59 16 20 C 0.14 3.34 3.21 44.99 0.14 3.48 16 21 C -0.17 -5.27 9.08 71.98 0.65 -4.62 16 22 C -0.16 -3.69 9.08 71.98 0.65 -3.04 16 23 C 0.49 17.13 5.35 87.71 0.47 17.60 16 24 O -0.57 -24.15 8.50 -3.02 -0.03 -24.18 16 25 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 26 H 0.08 2.51 7.84 -2.91 -0.02 2.49 16 27 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.05 2.18 5.40 -2.39 -0.01 2.17 16 29 H 0.05 2.55 7.16 -2.39 -0.02 2.53 16 30 H 0.02 1.13 5.74 -2.39 -0.01 1.11 16 31 H -0.02 -0.94 5.64 -2.39 -0.01 -0.95 16 32 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 33 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.05 1.68 6.41 -2.39 -0.02 1.67 16 35 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 36 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.11 1.22 8.03 -2.38 -0.02 1.20 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 1.98 7.79 -2.39 -0.02 1.96 16 40 H 0.04 1.80 5.84 -2.38 -0.01 1.78 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.45 6.00 -2.39 -0.01 1.44 16 Total: -1.00 -76.49 339.39 2.41 -74.08 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.89 Total: 17.93 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.46 Total: -11.70 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -5.80 Total: -105.12 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.03 Total: -24.18 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.99 kcal Total: -76.49 2.41 -74.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292083932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.355 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds