Wall clock time and date at job start Tue Mar 31 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53114 * 109.52550 * 299.87406 * 16 14 13 18 18 C 1.53038 * 109.27607 * 182.50475 * 17 16 14 19 19 N 1.46845 * 109.57833 * 59.08193 * 18 17 16 20 20 C 1.46898 * 111.00221 * 174.19027 * 19 18 17 21 21 C 1.53005 * 117.49656 * 7.83778 * 20 19 18 22 22 C 1.52998 * 59.99984 * 252.50689 * 21 20 19 23 23 C 1.46844 * 111.19673 * 298.29505 * 19 18 17 24 24 C 1.53027 * 109.52780 * 61.73831 * 23 19 18 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 31 31 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 32 32 H 1.09004 * 109.51925 * 60.00122 * 16 14 13 33 33 H 1.09003 * 109.50653 * 302.38444 * 17 16 14 34 34 H 1.09005 * 109.50384 * 62.49957 * 17 16 14 35 35 H 1.09007 * 109.40860 * 299.06933 * 18 17 16 36 36 H 1.09003 * 109.45606 * 179.13211 * 18 17 16 37 37 H 1.09000 * 115.54985 * 153.53963 * 20 19 18 38 38 H 1.08994 * 117.50141 * 359.97438 * 21 20 19 39 39 H 1.09002 * 117.49369 * 145.01928 * 21 20 19 40 40 H 1.09005 * 117.50264 * 252.51509 * 22 21 20 41 41 H 1.08996 * 117.50033 * 107.49012 * 22 21 20 42 42 H 1.09004 * 109.46045 * 301.72036 * 23 19 18 43 43 H 1.09003 * 109.45001 * 181.75362 * 23 19 18 44 44 H 1.08999 * 109.50829 * 180.87752 * 24 23 19 45 45 H 1.09007 * 109.53766 * 60.78041 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 1.0401 4.4742 -2.9768 18 6 0.6091 5.1886 -4.2597 19 7 -0.7555 5.7069 -4.0996 20 6 -1.1505 6.5168 -5.2597 21 6 -0.2081 6.5313 -6.4650 22 6 -0.3196 7.7644 -5.5663 23 6 -1.7130 4.6182 -3.8671 24 6 -1.3524 3.8877 -2.5717 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4384 31 1 2.2954 2.1150 -1.9977 32 1 0.1089 2.6006 -3.4972 33 1 1.0288 5.1804 -2.1466 34 1 2.0468 4.0751 -3.1019 35 1 0.6352 4.4854 -5.0922 36 1 1.2904 6.0153 -4.4612 37 1 -2.2214 6.5642 -5.4572 38 1 0.7051 5.9402 -6.3970 39 1 -0.6591 6.5882 -7.4557 40 1 -0.8439 8.6326 -5.9657 41 1 0.5201 7.9843 -4.9071 42 1 -1.6761 3.9177 -4.7014 43 1 -2.7185 5.0308 -3.7836 44 1 -2.0540 3.0699 -2.4075 45 1 -1.4027 4.5839 -1.7344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331563965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:07 Heat of formation + Delta-G solvation = -21.600015 kcal Electronic energy + Delta-G solvation = -22861.902904 eV Core-core repulsion = 19686.443621 eV Total energy + Delta-G solvation = -3175.459284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13847 -38.86914 -36.20449 -35.07227 -32.59817 -32.07006 -30.95928 -30.77943 -27.30786 -25.19399 -23.37341 -22.63524 -22.36981 -21.44209 -20.31160 -19.57604 -19.30712 -17.82413 -16.94615 -16.20778 -15.55760 -15.38886 -14.98676 -14.36173 -14.18577 -13.88753 -13.70965 -13.37449 -13.04532 -12.71008 -12.46671 -12.34814 -12.26233 -12.08046 -11.76382 -11.60494 -11.55713 -11.15607 -10.94262 -10.78162 -10.69186 -10.67009 -10.55714 -10.39463 -10.34456 -9.84154 -9.76772 -9.18151 -8.98776 -8.30442 -8.24222 -8.02824 -6.60199 -4.19036 3.30529 3.41232 3.42199 3.47117 3.62817 3.78618 4.02990 4.45245 4.53486 4.65293 4.74403 4.74831 4.81871 5.05750 5.09192 5.16711 5.26835 5.35157 5.39204 5.46240 5.50776 5.56645 5.66734 5.73226 5.75098 5.87511 5.96109 6.07245 6.09675 6.11364 6.22888 6.30955 6.42790 6.72334 6.81512 6.89203 6.94782 6.99924 7.08019 7.39338 7.47391 7.71615 8.25472 8.54435 8.72967 9.05100 9.45683 10.77436 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.003971 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.965986 B = 7049.731129 C = 7543.716646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.040 0.960 5 C -0.628 4.628 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.887 5.887 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.550 6.550 16 C -0.110 4.110 17 C -0.108 4.108 18 C 0.056 3.944 19 N -0.507 5.507 20 C 0.023 3.977 21 C -0.222 4.222 22 C -0.172 4.172 23 C 0.059 3.941 24 C -0.094 4.094 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.034 0.966 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 9.022 -14.516 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.147 3.853 4 H 0.057 0.943 5 C -0.666 4.666 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.519 5.519 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.291 3.709 15 O -0.429 6.429 16 C -0.131 4.131 17 C -0.146 4.146 18 C -0.072 4.072 19 N -0.229 5.229 20 C -0.086 4.086 21 C -0.261 4.261 22 C -0.210 4.210 23 C -0.068 4.068 24 C -0.132 4.132 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.223 0.777 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.127 8.968 -11.764 19.128 hybrid contribution 0.344 -0.214 -2.850 2.879 sum -11.783 8.754 -14.614 20.713 Atomic orbital electron populations 1.21886 0.97446 0.98740 1.01961 1.22226 0.93657 0.99852 1.01258 1.18978 0.95666 0.88401 0.82277 0.94277 1.21985 0.89819 1.49960 1.04789 0.92021 1.25601 0.96595 0.91667 1.02089 1.70871 1.13936 1.36533 1.30527 0.84225 0.76031 0.77651 0.76455 1.20888 1.20675 1.19943 1.46273 1.14630 1.56052 1.17971 1.20362 0.82552 0.78906 0.89059 1.90649 1.50814 1.60011 1.41448 1.21396 0.97156 0.97725 0.96859 1.21592 0.98123 0.96775 0.98127 1.22199 0.89868 0.98221 0.96908 1.61772 1.02423 1.22542 1.36191 1.22634 0.96703 0.99010 0.90262 1.23564 1.03357 1.03086 0.96074 1.23054 1.03283 0.92040 1.02600 1.22146 0.95689 0.91768 0.97247 1.21378 0.94663 0.99908 0.97294 0.93027 0.93297 0.95215 0.93297 0.91969 0.91914 0.77663 0.89606 0.90352 0.90663 0.94315 0.90432 0.86558 0.88229 0.88988 0.88596 0.88483 0.94773 0.90477 0.90762 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.53 37.16 0.32 -2.61 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.25 5.97 1.84 -69.09 -0.13 5.85 16 4 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -16.89 8.92 -34.44 -0.31 -17.20 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.89 -26.17 13.70 55.43 0.76 -25.41 16 9 Si 1.03 25.16 26.56 -169.99 -4.51 20.64 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.37 6.34 56.52 0.36 -6.01 16 13 N -0.70 -13.97 4.93 -54.93 -0.27 -14.24 16 14 C 0.51 9.40 5.76 -10.98 -0.06 9.34 16 15 O -0.55 -11.98 13.12 5.55 0.07 -11.91 16 16 C -0.11 -1.52 2.59 -91.65 -0.24 -1.75 16 17 C -0.11 -1.36 5.26 -26.65 -0.14 -1.50 16 18 C 0.06 0.59 4.09 -3.83 -0.02 0.58 16 19 N -0.51 -5.52 4.86 -226.69 -1.10 -6.63 16 20 C 0.02 0.21 6.12 -67.71 -0.41 -0.20 16 21 C -0.22 -1.79 9.51 -26.73 -0.25 -2.05 16 22 C -0.17 -1.43 9.97 -26.73 -0.27 -1.69 16 23 C 0.06 0.62 5.42 -3.84 -0.02 0.60 16 24 C -0.09 -1.23 4.68 -26.65 -0.12 -1.35 16 25 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 26 H 0.05 0.98 5.63 -51.93 -0.29 0.69 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.48 5.77 -51.93 -0.30 1.18 16 30 H 0.27 7.88 8.73 -40.82 -0.36 7.53 16 31 H 0.39 6.99 8.00 -40.82 -0.33 6.66 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 0.91 7.65 -51.93 -0.40 0.51 16 35 H 0.04 0.39 7.35 -51.92 -0.38 0.01 16 36 H 0.08 0.78 6.49 -51.93 -0.34 0.45 16 37 H 0.12 0.93 7.99 -51.93 -0.41 0.52 16 38 H 0.10 0.84 5.91 -51.93 -0.31 0.53 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.87 7.55 -51.93 -0.39 0.48 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.20 8.04 -51.93 -0.42 0.79 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -30.10 341.22 -9.51 -39.61 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.71 Total: 6.61 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.89 Total: -13.83 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.61 Total: -46.27 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.51 Total: 20.64 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.10 -9.51 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331563965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.013 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds