Wall clock time and date at job start Tue Mar 31 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53114 * 109.52550 * 299.87406 * 16 14 13 18 18 C 1.53038 * 109.27607 * 182.50475 * 17 16 14 19 19 N 1.46845 * 109.57833 * 59.08193 * 18 17 16 20 20 C 1.46898 * 111.00221 * 174.19027 * 19 18 17 21 21 C 1.53005 * 117.49656 * 7.83778 * 20 19 18 22 22 C 1.52998 * 59.99984 * 252.50689 * 21 20 19 23 23 C 1.46844 * 111.19673 * 298.29505 * 19 18 17 24 24 C 1.53027 * 109.52780 * 61.73831 * 23 19 18 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 31 31 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 32 32 H 1.09004 * 109.51925 * 60.00122 * 16 14 13 33 33 H 1.09003 * 109.50653 * 302.38444 * 17 16 14 34 34 H 1.09005 * 109.50384 * 62.49957 * 17 16 14 35 35 H 1.09007 * 109.40860 * 299.06933 * 18 17 16 36 36 H 1.09003 * 109.45606 * 179.13211 * 18 17 16 37 37 H 1.09000 * 115.54985 * 153.53963 * 20 19 18 38 38 H 1.08994 * 117.50141 * 359.97438 * 21 20 19 39 39 H 1.09002 * 117.49369 * 145.01928 * 21 20 19 40 40 H 1.09005 * 117.50264 * 252.51509 * 22 21 20 41 41 H 1.08996 * 117.50033 * 107.49012 * 22 21 20 42 42 H 1.09004 * 109.46045 * 301.72036 * 23 19 18 43 43 H 1.09003 * 109.45001 * 181.75362 * 23 19 18 44 44 H 1.08999 * 109.50829 * 180.87752 * 24 23 19 45 45 H 1.09007 * 109.53766 * 60.78041 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 1.0401 4.4742 -2.9768 18 6 0.6091 5.1886 -4.2597 19 7 -0.7555 5.7069 -4.0996 20 6 -1.1505 6.5168 -5.2597 21 6 -0.2081 6.5313 -6.4650 22 6 -0.3196 7.7644 -5.5663 23 6 -1.7130 4.6182 -3.8671 24 6 -1.3524 3.8877 -2.5717 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4384 31 1 2.2954 2.1150 -1.9977 32 1 0.1089 2.6006 -3.4972 33 1 1.0288 5.1804 -2.1466 34 1 2.0468 4.0751 -3.1019 35 1 0.6352 4.4854 -5.0922 36 1 1.2904 6.0153 -4.4612 37 1 -2.2214 6.5642 -5.4572 38 1 0.7051 5.9402 -6.3970 39 1 -0.6591 6.5882 -7.4557 40 1 -0.8439 8.6326 -5.9657 41 1 0.5201 7.9843 -4.9071 42 1 -1.6761 3.9177 -4.7014 43 1 -2.7185 5.0308 -3.7836 44 1 -2.0540 3.0699 -2.4075 45 1 -1.4027 4.5839 -1.7344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331563965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:06 Heat of formation + Delta-G solvation = -41.537474 kcal Electronic energy + Delta-G solvation = -22862.767457 eV Core-core repulsion = 19686.443621 eV Total energy + Delta-G solvation = -3176.323837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33315 -40.02674 -37.38681 -36.61612 -34.49479 -33.52708 -32.30729 -31.73841 -29.16958 -26.32509 -24.29440 -24.29356 -23.26844 -22.63796 -21.57925 -21.10202 -20.45246 -19.73465 -18.04077 -17.50577 -17.07067 -16.49300 -16.18620 -15.66142 -15.24019 -15.17317 -14.94361 -14.91443 -14.46116 -14.35695 -14.18323 -13.80716 -13.44125 -13.19440 -13.09750 -12.66878 -12.63912 -12.48175 -12.44135 -12.29709 -12.02637 -11.79279 -11.75348 -11.58544 -11.53242 -11.48312 -11.22863 -11.12979 -10.52997 -10.41138 -9.75574 -9.05666 -8.81286 -6.40469 1.45334 1.47687 1.68820 1.81978 2.41359 2.53015 2.69405 2.92671 3.10824 3.64671 3.76026 3.85576 3.94180 4.08245 4.14166 4.24263 4.30711 4.31133 4.37481 4.40325 4.47054 4.55892 4.64467 4.71917 4.76937 4.81191 4.84790 4.86753 4.97640 5.08556 5.11701 5.12260 5.17725 5.22958 5.27272 5.30749 5.36985 5.54880 5.71904 5.72617 6.03160 6.10061 6.18275 6.55385 6.90774 7.27554 7.50610 8.55174 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.003971 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.965986 B = 7049.731129 C = 7543.716646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.255 3.745 4 H 0.017 0.983 5 C -0.626 4.626 6 H 0.042 0.958 7 C 0.008 3.992 8 N -0.916 5.916 9 Si 1.062 2.938 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.256 1.256 13 N -0.703 5.703 14 C 0.504 3.496 15 O -0.582 6.582 16 C -0.098 4.098 17 C -0.104 4.104 18 C 0.063 3.937 19 N -0.524 5.524 20 C 0.014 3.986 21 C -0.213 4.213 22 C -0.174 4.174 23 C 0.066 3.934 24 C -0.090 4.090 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.262 0.738 31 H 0.401 0.599 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 9.343 -16.265 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.150 3.850 4 H 0.035 0.965 5 C -0.663 4.663 6 H 0.060 0.940 7 C -0.195 4.195 8 N -0.549 5.549 9 Si 0.884 3.116 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.181 1.181 13 N -0.351 5.351 14 C 0.292 3.708 15 O -0.463 6.463 16 C -0.120 4.120 17 C -0.143 4.143 18 C -0.065 4.065 19 N -0.247 5.247 20 C -0.095 4.095 21 C -0.252 4.252 22 C -0.212 4.212 23 C -0.061 4.061 24 C -0.128 4.128 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.235 0.765 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.834 9.304 -13.551 21.484 hybrid contribution 0.891 -0.253 -2.356 2.531 sum -12.943 9.051 -15.907 22.416 Atomic orbital electron populations 1.21756 0.95535 1.00247 1.01376 1.22114 0.95269 0.98465 1.00828 1.18676 0.93407 0.89452 0.83494 0.96478 1.22159 0.91522 1.48676 1.03959 0.93975 1.26619 0.96720 0.91311 1.04891 1.70957 1.15029 1.38878 1.30052 0.83786 0.75833 0.78196 0.73761 1.20527 1.20165 1.18086 1.46130 1.15680 1.56334 1.17003 1.21165 0.81383 0.77921 0.90361 1.90632 1.51590 1.60973 1.43099 1.21385 0.97892 0.98185 0.94510 1.21555 0.98141 0.95978 0.98579 1.22117 0.90135 0.98445 0.95776 1.61732 1.02419 1.22861 1.37678 1.22737 0.97590 0.99106 0.90101 1.23587 1.02850 1.02465 0.96329 1.23104 1.02955 0.92572 1.02591 1.22071 0.96195 0.91859 0.95969 1.21326 0.93989 0.99507 0.98010 0.94405 0.93076 0.92604 0.92819 0.93312 0.92875 0.76500 0.87204 0.92625 0.90279 0.93025 0.89925 0.85322 0.88534 0.87658 0.87264 0.89549 0.93442 0.89210 0.90958 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.53 71.98 0.61 -4.57 16 2 C -0.13 -5.65 5.37 30.60 0.16 -5.49 16 3 C 0.25 12.13 1.84 44.25 0.08 12.21 16 4 H 0.02 0.91 6.12 -2.39 -0.01 0.90 16 5 C -0.63 -34.04 8.92 25.60 0.23 -33.81 16 6 H 0.04 2.41 7.96 -2.91 -0.02 2.39 16 7 C 0.01 0.43 5.15 84.66 0.44 0.87 16 8 N -0.92 -54.88 13.70 21.45 0.29 -54.58 16 9 Si 1.06 50.91 26.56 68.60 1.82 52.74 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.26 -11.49 6.34 99.48 0.63 -10.86 16 13 N -0.70 -27.65 4.93 -446.10 -2.20 -29.85 16 14 C 0.50 18.38 5.76 87.66 0.50 18.88 16 15 O -0.58 -25.22 13.12 -3.04 -0.04 -25.26 16 16 C -0.10 -2.57 2.59 -11.46 -0.03 -2.60 16 17 C -0.10 -2.51 5.26 30.65 0.16 -2.34 16 18 C 0.06 1.20 4.09 86.33 0.35 1.56 16 19 N -0.52 -10.27 4.86 -871.12 -4.24 -14.51 16 20 C 0.01 0.21 6.12 44.92 0.27 0.49 16 21 C -0.21 -2.84 9.51 30.60 0.29 -2.55 16 22 C -0.17 -2.51 9.97 30.59 0.31 -2.20 16 23 C 0.07 1.24 5.42 86.32 0.47 1.71 16 24 C -0.09 -2.22 4.68 30.64 0.14 -2.08 16 25 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 26 H 0.05 1.97 5.63 -2.39 -0.01 1.95 16 27 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 2.27 5.77 -2.39 -0.01 2.25 16 30 H 0.26 15.65 8.73 -92.71 -0.81 14.84 16 31 H 0.40 14.08 8.00 -92.71 -0.74 13.34 16 32 H 0.11 2.40 8.14 -2.39 -0.02 2.39 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.82 7.65 -2.38 -0.02 1.80 16 35 H 0.05 0.88 7.35 -2.38 -0.02 0.86 16 36 H 0.08 1.51 6.49 -2.39 -0.02 1.50 16 37 H 0.13 1.66 7.99 -2.39 -0.02 1.64 16 38 H 0.10 1.35 5.91 -2.39 -0.01 1.34 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.09 1.43 7.55 -2.39 -0.02 1.41 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 1.46 8.06 -2.39 -0.02 1.44 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.64 8.04 -2.38 -0.02 1.63 16 Total: -1.00 -64.89 341.22 -0.25 -65.14 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.11 Total: 26.25 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 4.00 Total: -19.93 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -6.14 Total: -98.94 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.04 Total: -25.26 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 1.82 Total: 52.74 kcal Total: -64.89 -0.25 -65.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331563965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.602 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds