Wall clock time and date at job start Tue Mar 31 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47802 * 2 1 4 4 N 1.46502 * 109.47225 * 239.99572 * 2 1 3 5 5 C 1.34778 * 119.99677 * 60.85567 * 4 2 1 6 6 O 1.21587 * 119.99384 * 176.13789 * 5 4 2 7 7 N 1.34771 * 119.99980 * 356.13425 * 5 4 2 8 8 C 1.46498 * 119.99711 * 185.26215 * 7 5 4 9 9 H 1.09005 * 110.02054 * 325.06405 * 8 7 5 10 10 C 1.53881 * 110.03378 * 86.45469 * 8 7 5 11 11 C 1.54269 * 106.59584 * 119.28303 * 10 8 7 12 12 C 1.54881 * 104.19741 * 23.61205 * 11 10 8 13 13 H 1.09000 * 110.75682 * 80.55510 * 12 11 10 14 14 C 1.50700 * 110.75683 * 203.73925 * 12 11 10 15 15 H 1.08006 * 120.00291 * 118.54756 * 14 12 11 16 16 C 1.37872 * 120.00211 * 298.54950 * 14 12 11 17 17 N 1.31515 * 120.00107 * 179.97438 * 16 14 12 18 18 Si 1.86802 * 119.99979 * 359.97438 * 16 14 12 19 19 H 1.48497 * 109.47494 * 90.00030 * 18 16 14 20 20 H 1.48501 * 109.46946 * 209.99929 * 18 16 14 21 21 H 1.48495 * 109.47016 * 329.99693 * 18 16 14 22 22 C 1.54273 * 110.03163 * 203.62119 * 8 7 5 23 23 C 1.46500 * 119.99789 * 240.85397 * 4 2 1 24 24 C 1.53004 * 117.49659 * 197.46550 * 23 4 2 25 25 C 1.53008 * 117.49517 * 128.80659 * 23 4 2 26 26 H 1.08995 * 109.47437 * 186.31035 * 1 2 3 27 27 H 1.09000 * 109.46866 * 306.31399 * 1 2 3 28 28 H 1.09005 * 109.46750 * 66.30630 * 1 2 3 29 29 H 1.09004 * 109.47272 * 119.99960 * 2 1 3 30 30 H 1.09004 * 109.46842 * 304.96285 * 3 2 1 31 31 H 1.09006 * 109.46979 * 64.95624 * 3 2 1 32 32 H 1.08997 * 109.47437 * 184.96235 * 3 2 1 33 33 H 0.96997 * 120.00450 * 5.26366 * 7 5 4 34 34 H 1.08997 * 110.03173 * 238.56778 * 10 8 7 35 35 H 1.09002 * 110.02573 * 359.95592 * 10 8 7 36 36 H 1.09003 * 110.48203 * 142.29117 * 11 10 8 37 37 H 1.09003 * 110.48384 * 264.93249 * 11 10 8 38 38 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 39 39 H 1.08993 * 110.48393 * 335.78609 * 22 8 7 40 40 H 1.09000 * 110.48176 * 98.43246 * 22 8 7 41 41 H 1.08998 * 115.55403 * 343.13776 * 23 4 2 42 42 H 1.09003 * 117.49917 * 359.97438 * 24 23 4 43 43 H 1.08993 * 117.50083 * 145.02049 * 24 23 4 44 44 H 1.08991 * 117.49558 * 214.97358 * 25 23 4 45 45 H 1.09001 * 117.49675 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.7070 -0.2203 -2.4202 6 8 2.1695 -0.7516 -3.4112 7 7 0.8830 0.8388 -2.5456 8 6 0.4527 1.2786 -3.8750 9 1 1.2574 1.1315 -4.5954 10 6 -0.7959 0.4924 -4.3119 11 6 -1.9190 1.5293 -4.5202 12 6 -1.1662 2.8546 -4.7951 13 1 -0.8361 2.9033 -5.8328 14 6 -2.0317 4.0408 -4.4560 15 1 -1.7203 4.7350 -3.6894 16 6 -3.2211 4.2398 -5.1242 17 7 -3.9767 5.2746 -4.8279 18 14 -3.7595 3.0395 -6.4505 19 1 -4.5713 1.9570 -5.8386 20 1 -4.5737 3.7556 -7.4652 21 1 -2.5615 2.4519 -7.1021 22 6 0.0447 2.7658 -3.8333 23 6 2.8451 -1.8926 -1.0616 24 6 3.6557 -2.3327 -2.2824 25 6 2.4231 -3.1324 -1.8528 26 1 -0.3634 -1.0214 0.1129 27 1 -0.3633 0.6086 0.8281 28 1 -0.3633 0.4130 -0.9411 29 1 1.8933 -0.5138 0.8900 30 1 1.6060 1.9813 -0.8422 31 1 1.7511 1.9300 0.9311 32 1 3.1264 1.4436 -0.0889 33 1 0.5750 1.3099 -1.7556 34 1 -0.5973 -0.0355 -5.2446 35 1 -1.0811 -0.2169 -3.5349 36 1 -2.5360 1.2564 -5.3764 37 1 -2.5292 1.6165 -3.6212 38 1 -4.8137 5.4145 -5.2977 39 1 -0.2484 3.0527 -2.8235 40 1 0.8607 3.3953 -4.1882 41 1 3.2896 -2.0499 -0.0790 42 1 3.5735 -1.7281 -3.1857 43 1 4.6333 -2.7798 -2.1029 44 1 2.5905 -4.1053 -1.3908 45 1 1.5301 -3.0538 -2.4730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331936826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:28 Heat of formation + Delta-G solvation = 20.857918 kcal Electronic energy + Delta-G solvation = -23407.950749 eV Core-core repulsion = 20234.332579 eV Total energy + Delta-G solvation = -3173.618169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85335 -37.97331 -36.47538 -36.14212 -33.25174 -31.91488 -30.77709 -28.48439 -27.58134 -27.40559 -24.00913 -22.87075 -22.34222 -21.86133 -20.40451 -19.73584 -19.10019 -17.23213 -16.78159 -16.39693 -15.48993 -15.32960 -14.98308 -14.50189 -14.44120 -14.04405 -13.84029 -13.51511 -13.24551 -12.81158 -12.57687 -12.41392 -12.38055 -11.97433 -11.77166 -11.65936 -11.51235 -11.14007 -11.05183 -10.91861 -10.84621 -10.43932 -10.31616 -10.06718 -9.94948 -9.75964 -9.44491 -9.36218 -9.02326 -8.71279 -8.53971 -8.27809 -6.07905 -4.06989 2.64315 3.23695 3.30013 3.39652 3.41873 3.87627 4.00320 4.42652 4.56919 4.81863 4.84881 4.94123 4.97195 5.12791 5.21406 5.29754 5.35465 5.40372 5.47940 5.51225 5.58771 5.61551 5.69410 5.74108 5.95617 6.03297 6.03688 6.12911 6.19347 6.30676 6.38316 6.48228 6.51841 6.55932 6.68858 6.81402 6.89220 6.98357 7.07242 7.18153 7.52562 7.76174 8.10168 8.51202 8.79202 8.95060 9.55446 11.05288 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026971 B = 0.004527 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.899293 B = 6182.947301 C = 6670.614757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.136 3.864 3 C -0.180 4.180 4 N -0.603 5.603 5 C 0.709 3.291 6 O -0.586 6.586 7 N -0.737 5.737 8 C 0.149 3.851 9 H 0.084 0.916 10 C -0.131 4.131 11 C -0.130 4.130 12 C 0.015 3.985 13 H 0.035 0.965 14 C -0.510 4.510 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.903 5.903 18 Si 0.882 3.118 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.264 1.264 22 C -0.109 4.109 23 C 0.088 3.912 24 C -0.197 4.197 25 C -0.192 4.192 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.263 0.737 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.004 -12.919 11.102 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.033 3.967 3 C -0.239 4.239 4 N -0.338 5.338 5 C 0.411 3.589 6 O -0.465 6.465 7 N -0.399 5.399 8 C 0.045 3.955 9 H 0.102 0.898 10 C -0.170 4.170 11 C -0.168 4.168 12 C -0.004 4.004 13 H 0.053 0.947 14 C -0.548 4.548 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.541 5.541 18 Si 0.711 3.289 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.189 1.189 22 C -0.148 4.148 23 C -0.018 4.018 24 C -0.234 4.234 25 C -0.230 4.230 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.243 0.757 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.166 0.834 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.139 -13.171 10.357 20.690 hybrid contribution -0.695 -0.504 -0.181 0.878 sum 11.444 -13.676 10.175 20.531 Atomic orbital electron populations 1.22552 0.94788 1.03270 1.03888 1.21096 0.94390 0.93224 0.88039 1.22484 1.02341 0.95791 1.03271 1.46692 1.54343 1.28302 1.04467 1.16026 0.79319 0.80669 0.82863 1.90649 1.57293 1.61516 1.37075 1.46477 1.50703 1.32211 1.10470 1.21741 0.96193 0.94964 0.82633 0.89807 1.22574 0.95837 0.98087 1.00461 1.22817 0.96924 0.96376 1.00700 1.20054 0.92172 0.93208 0.94965 0.94675 1.20973 1.03928 1.08327 1.21574 0.90848 1.24978 0.96404 0.95082 0.96529 1.69900 1.13240 1.28696 1.42264 0.86905 0.78872 0.80998 0.82108 1.20491 1.22297 1.18926 1.22566 0.99043 0.91889 1.01269 1.21422 0.98231 0.85058 0.97039 1.24134 0.94150 1.03409 1.01698 1.23259 1.00423 0.94957 1.04408 0.91806 0.90813 0.90602 0.88964 0.91275 0.90769 0.91713 0.75696 0.92298 0.92650 0.93601 0.91563 0.92701 0.91650 0.92149 0.85839 0.83374 0.89955 0.89115 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 9.02 37.15 0.34 -1.46 16 2 C 0.14 1.27 3.29 -67.93 -0.22 1.04 16 3 C -0.18 -1.62 9.00 37.16 0.33 -1.29 16 4 N -0.60 -7.32 2.79 -164.23 -0.46 -7.78 16 5 C 0.71 10.93 7.42 -86.92 -0.64 10.28 16 6 O -0.59 -10.67 11.86 5.29 0.06 -10.61 16 7 N -0.74 -11.02 3.38 -57.57 -0.19 -11.22 16 8 C 0.15 2.58 3.27 -66.81 -0.22 2.36 16 9 H 0.08 1.52 7.54 -51.93 -0.39 1.13 16 10 C -0.13 -2.37 6.59 -25.61 -0.17 -2.54 16 11 C -0.13 -2.74 5.07 -25.07 -0.13 -2.87 16 12 C 0.02 0.35 2.30 -89.78 -0.21 0.14 16 13 H 0.04 0.82 7.37 -51.93 -0.38 0.44 16 14 C -0.51 -13.87 9.12 -34.44 -0.31 -14.18 16 15 H 0.07 2.14 8.03 -52.48 -0.42 1.72 16 16 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 17 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 18 Si 0.88 21.73 24.46 -169.99 -4.16 17.57 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.26 -6.27 6.48 56.52 0.37 -5.91 16 22 C -0.11 -2.06 5.94 -25.07 -0.15 -2.21 16 23 C 0.09 0.96 6.58 -67.92 -0.45 0.52 16 24 C -0.20 -2.40 9.64 -26.69 -0.26 -2.66 16 25 C -0.19 -2.22 9.90 -26.68 -0.26 -2.48 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.89 5.00 -51.93 -0.26 0.64 16 29 H 0.09 0.67 7.82 -51.93 -0.41 0.26 16 30 H 0.07 0.74 5.25 -51.93 -0.27 0.46 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 5.33 2.86 -40.82 -0.12 5.21 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 36 H 0.05 1.00 4.91 -51.93 -0.25 0.74 16 37 H 0.07 1.42 8.04 -51.93 -0.42 1.01 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.06 1.20 7.63 -51.93 -0.40 0.81 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.12 1.00 7.99 -51.93 -0.42 0.59 16 42 H 0.15 2.32 4.97 -53.32 -0.27 2.06 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.33 7.80 -51.93 -0.41 0.92 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -30.85 336.31 -8.72 -39.57 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.37 Total: 7.28 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.45 Total: -13.41 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.12 Total: -45.47 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.06 Total: -10.61 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.16 Total: 17.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.85 -8.72 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331936826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.427 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds