Wall clock time and date at job start Tue Mar 31 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47802 * 2 1 4 4 N 1.46502 * 109.47225 * 239.99572 * 2 1 3 5 5 C 1.34778 * 119.99677 * 60.85567 * 4 2 1 6 6 O 1.21587 * 119.99384 * 176.13789 * 5 4 2 7 7 N 1.34771 * 119.99980 * 356.13425 * 5 4 2 8 8 C 1.46498 * 119.99711 * 185.26215 * 7 5 4 9 9 H 1.09005 * 110.02054 * 325.06405 * 8 7 5 10 10 C 1.53881 * 110.03378 * 86.45469 * 8 7 5 11 11 C 1.54269 * 106.59584 * 119.28303 * 10 8 7 12 12 C 1.54881 * 104.19741 * 23.61205 * 11 10 8 13 13 H 1.09000 * 110.75682 * 80.55510 * 12 11 10 14 14 C 1.50700 * 110.75683 * 203.73925 * 12 11 10 15 15 H 1.08006 * 120.00291 * 118.54756 * 14 12 11 16 16 C 1.37872 * 120.00211 * 298.54950 * 14 12 11 17 17 N 1.31515 * 120.00107 * 179.97438 * 16 14 12 18 18 Si 1.86802 * 119.99979 * 359.97438 * 16 14 12 19 19 H 1.48497 * 109.47494 * 90.00030 * 18 16 14 20 20 H 1.48501 * 109.46946 * 209.99929 * 18 16 14 21 21 H 1.48495 * 109.47016 * 329.99693 * 18 16 14 22 22 C 1.54273 * 110.03163 * 203.62119 * 8 7 5 23 23 C 1.46500 * 119.99789 * 240.85397 * 4 2 1 24 24 C 1.53004 * 117.49659 * 197.46550 * 23 4 2 25 25 C 1.53008 * 117.49517 * 128.80659 * 23 4 2 26 26 H 1.08995 * 109.47437 * 186.31035 * 1 2 3 27 27 H 1.09000 * 109.46866 * 306.31399 * 1 2 3 28 28 H 1.09005 * 109.46750 * 66.30630 * 1 2 3 29 29 H 1.09004 * 109.47272 * 119.99960 * 2 1 3 30 30 H 1.09004 * 109.46842 * 304.96285 * 3 2 1 31 31 H 1.09006 * 109.46979 * 64.95624 * 3 2 1 32 32 H 1.08997 * 109.47437 * 184.96235 * 3 2 1 33 33 H 0.96997 * 120.00450 * 5.26366 * 7 5 4 34 34 H 1.08997 * 110.03173 * 238.56778 * 10 8 7 35 35 H 1.09002 * 110.02573 * 359.95592 * 10 8 7 36 36 H 1.09003 * 110.48203 * 142.29117 * 11 10 8 37 37 H 1.09003 * 110.48384 * 264.93249 * 11 10 8 38 38 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 39 39 H 1.08993 * 110.48393 * 335.78609 * 22 8 7 40 40 H 1.09000 * 110.48176 * 98.43246 * 22 8 7 41 41 H 1.08998 * 115.55403 * 343.13776 * 23 4 2 42 42 H 1.09003 * 117.49917 * 359.97438 * 24 23 4 43 43 H 1.08993 * 117.50083 * 145.02049 * 24 23 4 44 44 H 1.08991 * 117.49558 * 214.97358 * 25 23 4 45 45 H 1.09001 * 117.49675 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.7070 -0.2203 -2.4202 6 8 2.1695 -0.7516 -3.4112 7 7 0.8830 0.8388 -2.5456 8 6 0.4527 1.2786 -3.8750 9 1 1.2574 1.1315 -4.5954 10 6 -0.7959 0.4924 -4.3119 11 6 -1.9190 1.5293 -4.5202 12 6 -1.1662 2.8546 -4.7951 13 1 -0.8361 2.9033 -5.8328 14 6 -2.0317 4.0408 -4.4560 15 1 -1.7203 4.7350 -3.6894 16 6 -3.2211 4.2398 -5.1242 17 7 -3.9767 5.2746 -4.8279 18 14 -3.7595 3.0395 -6.4505 19 1 -4.5713 1.9570 -5.8386 20 1 -4.5737 3.7556 -7.4652 21 1 -2.5615 2.4519 -7.1021 22 6 0.0447 2.7658 -3.8333 23 6 2.8451 -1.8926 -1.0616 24 6 3.6557 -2.3327 -2.2824 25 6 2.4231 -3.1324 -1.8528 26 1 -0.3634 -1.0214 0.1129 27 1 -0.3633 0.6086 0.8281 28 1 -0.3633 0.4130 -0.9411 29 1 1.8933 -0.5138 0.8900 30 1 1.6060 1.9813 -0.8422 31 1 1.7511 1.9300 0.9311 32 1 3.1264 1.4436 -0.0889 33 1 0.5750 1.3099 -1.7556 34 1 -0.5973 -0.0355 -5.2446 35 1 -1.0811 -0.2169 -3.5349 36 1 -2.5360 1.2564 -5.3764 37 1 -2.5292 1.6165 -3.6212 38 1 -4.8137 5.4145 -5.2977 39 1 -0.2484 3.0527 -2.8235 40 1 0.8607 3.3953 -4.1882 41 1 3.2896 -2.0499 -0.0790 42 1 3.5735 -1.7281 -3.1857 43 1 4.6333 -2.7798 -2.1029 44 1 2.5905 -4.1053 -1.3908 45 1 1.5301 -3.0538 -2.4730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331936826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:27 Heat of formation + Delta-G solvation = 2.983004 kcal Electronic energy + Delta-G solvation = -23408.725863 eV Core-core repulsion = 20234.332579 eV Total energy + Delta-G solvation = -3174.393284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94245 -39.39646 -37.53612 -37.22029 -34.92254 -33.64875 -31.69521 -30.22140 -29.12952 -28.14158 -25.72059 -24.11263 -23.25157 -22.68212 -21.73777 -21.19541 -20.67860 -18.89578 -17.96788 -17.56510 -16.90130 -16.71458 -16.35534 -15.83794 -15.45248 -15.34234 -14.84438 -14.79914 -14.41413 -14.26098 -14.12267 -14.08048 -13.33726 -13.16011 -12.87582 -12.76814 -12.66558 -12.56008 -12.39410 -12.20785 -11.90603 -11.86102 -11.70806 -11.59843 -11.50477 -11.24088 -11.16465 -11.04656 -10.69275 -10.55606 -9.96075 -9.27313 -8.27804 -6.30266 1.33310 1.37591 1.47151 1.63979 2.08953 2.35107 2.83531 3.08059 3.09661 3.77841 3.82838 3.88489 4.01654 4.06727 4.08026 4.12741 4.25988 4.28852 4.55174 4.58593 4.63307 4.64759 4.70913 4.78820 4.86157 4.88194 4.89430 4.93405 4.95029 4.98590 5.09620 5.13165 5.24886 5.25195 5.30516 5.37883 5.44246 5.63273 5.73133 5.78759 5.87933 6.01247 6.33248 6.75801 7.00146 7.35496 7.63858 8.88753 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026971 B = 0.004527 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.899293 B = 6182.947301 C = 6670.614757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.134 3.866 3 C -0.178 4.178 4 N -0.599 5.599 5 C 0.701 3.299 6 O -0.618 6.618 7 N -0.732 5.732 8 C 0.161 3.839 9 H 0.077 0.923 10 C -0.121 4.121 11 C -0.125 4.125 12 C 0.008 3.992 13 H 0.031 0.969 14 C -0.509 4.509 15 H 0.040 0.960 16 C 0.017 3.983 17 N -0.950 5.950 18 Si 0.938 3.062 19 H -0.268 1.268 20 H -0.297 1.297 21 H -0.249 1.249 22 C -0.100 4.100 23 C 0.092 3.908 24 C -0.209 4.209 25 C -0.191 4.191 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.126 0.874 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.409 0.591 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.265 0.735 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.165 0.835 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.148 -15.012 12.699 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.031 3.969 3 C -0.236 4.236 4 N -0.334 5.334 5 C 0.404 3.596 6 O -0.500 6.500 7 N -0.394 5.394 8 C 0.056 3.944 9 H 0.095 0.905 10 C -0.159 4.159 11 C -0.163 4.163 12 C -0.011 4.011 13 H 0.049 0.951 14 C -0.547 4.547 15 H 0.058 0.942 16 C -0.180 4.180 17 N -0.590 5.590 18 Si 0.765 3.235 19 H -0.193 1.193 20 H -0.225 1.225 21 H -0.173 1.173 22 C -0.138 4.138 23 C -0.012 4.012 24 C -0.246 4.246 25 C -0.230 4.230 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.182 0.818 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.300 -15.276 11.999 23.542 hybrid contribution -1.003 0.204 -0.606 1.189 sum 12.297 -15.072 11.394 22.543 Atomic orbital electron populations 1.22532 0.95043 1.03442 1.03283 1.21364 0.94154 0.93500 0.87856 1.22469 1.02061 0.95542 1.03558 1.46846 1.53840 1.28525 1.04144 1.16254 0.79169 0.80502 0.83691 1.90672 1.58338 1.62385 1.38612 1.46325 1.50787 1.32497 1.09797 1.21397 0.95597 0.93574 0.83867 0.90507 1.22480 0.94953 0.97439 1.01071 1.22673 0.97460 0.96093 1.00110 1.20025 0.93231 0.92308 0.95581 0.95065 1.21262 1.04327 1.09014 1.20127 0.94194 1.25758 0.96656 0.96696 0.98884 1.70035 1.14023 1.30899 1.44072 0.85986 0.79006 0.79079 0.79466 1.19328 1.22487 1.17302 1.22414 0.97670 0.93350 1.00349 1.21847 0.97207 0.83974 0.98197 1.23975 0.95594 1.03933 1.01144 1.23222 0.98768 0.96622 1.04344 0.91827 0.88843 0.93086 0.85639 0.93354 0.88472 0.91861 0.74635 0.91864 0.91766 0.93988 0.92355 0.92650 0.91525 0.91503 0.81829 0.86971 0.87683 0.86395 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.02 71.98 0.65 -2.43 16 2 C 0.13 2.05 3.29 44.99 0.15 2.20 16 3 C -0.18 -2.73 9.00 71.98 0.65 -2.08 16 4 N -0.60 -13.22 2.79 -791.77 -2.21 -15.43 16 5 C 0.70 20.99 7.42 179.06 1.33 22.32 16 6 O -0.62 -22.55 11.86 -3.99 -0.05 -22.60 16 7 N -0.73 -21.27 3.38 -454.33 -1.53 -22.80 16 8 C 0.16 5.46 3.27 45.72 0.15 5.61 16 9 H 0.08 2.75 7.54 -2.38 -0.02 2.73 16 10 C -0.12 -4.24 6.59 31.32 0.21 -4.03 16 11 C -0.13 -5.16 5.07 31.67 0.16 -5.00 16 12 C 0.01 0.35 2.30 -10.25 -0.02 0.33 16 13 H 0.03 1.44 7.37 -2.39 -0.02 1.43 16 14 C -0.51 -28.23 9.12 25.60 0.23 -28.00 16 15 H 0.04 2.42 8.03 -2.91 -0.02 2.39 16 16 C 0.02 0.98 5.46 84.65 0.46 1.44 16 17 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 18 Si 0.94 44.77 24.46 68.60 1.68 46.45 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.25 -11.17 6.48 99.48 0.64 -10.52 16 22 C -0.10 -3.72 5.94 31.67 0.19 -3.53 16 23 C 0.09 1.75 6.58 45.00 0.30 2.04 16 24 C -0.21 -4.79 9.64 30.62 0.30 -4.49 16 25 C -0.19 -4.05 9.90 30.62 0.30 -3.75 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.12 5.00 -2.38 -0.01 1.11 16 29 H 0.13 1.18 7.82 -2.38 -0.02 1.16 16 30 H 0.05 0.95 5.25 -2.39 -0.01 0.94 16 31 H 0.10 1.04 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.41 10.47 2.86 -92.71 -0.27 10.21 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.15 7.92 -2.39 -0.02 2.13 16 36 H 0.04 1.75 4.91 -2.39 -0.01 1.74 16 37 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 38 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 39 H 0.07 2.45 7.63 -2.39 -0.02 2.43 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.16 1.81 7.99 -2.39 -0.02 1.79 16 42 H 0.11 3.54 4.97 -24.48 -0.12 3.42 16 43 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 45 H 0.06 1.74 7.80 -2.39 -0.02 1.72 16 Total: -1.00 -68.82 336.31 3.77 -65.05 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.54 Total: 27.12 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 5.04 Total: -19.36 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -3.45 Total: -96.66 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.68 Total: 46.45 kcal Total: -68.82 3.77 -65.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331936826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.032 kcal (2) G-P(sol) polarization free energy of solvation -68.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds