Wall clock time and date at job start Tue Mar 31 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47435 * 2 1 4 4 N 1.46506 * 109.47126 * 120.00098 * 2 1 3 5 5 C 1.46758 * 124.34956 * 119.94846 * 4 2 1 6 6 C 1.54482 * 105.47136 * 197.03859 * 5 4 2 7 7 C 1.54632 * 101.76427 * 334.58338 * 6 5 4 8 8 H 1.08998 * 110.59378 * 143.53283 * 7 6 5 9 9 N 1.46899 * 110.48910 * 266.11916 * 7 6 5 10 10 C 1.46841 * 111.00281 * 176.23046 * 9 7 6 11 11 C 1.53042 * 109.52629 * 174.16212 * 10 9 7 12 12 C 1.53117 * 109.27613 * 59.17734 * 11 10 9 13 13 C 1.50706 * 109.51923 * 182.37896 * 12 11 10 14 14 H 1.07998 * 120.00003 * 359.86961 * 13 12 11 15 15 C 1.37879 * 119.99691 * 179.87708 * 13 12 11 16 16 N 1.31514 * 120.00149 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99852 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47030 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47177 * 119.99514 * 17 15 13 20 20 H 1.48494 * 109.47156 * 239.99452 * 17 15 13 21 21 C 1.53120 * 109.16267 * 302.34396 * 12 11 10 22 22 C 1.46850 * 110.99956 * 52.01734 * 9 7 6 23 23 C 1.34423 * 124.34703 * 299.97217 * 4 2 1 24 24 O 1.21279 * 124.94178 * 359.53697 * 23 4 2 25 25 H 1.09002 * 109.46754 * 60.00034 * 1 2 3 26 26 H 1.08997 * 109.47356 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47009 * 300.00452 * 1 2 3 28 28 H 1.09006 * 109.47352 * 239.99651 * 2 1 3 29 29 H 1.09004 * 109.47506 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47122 * 299.99740 * 3 2 1 31 31 H 1.08999 * 109.47391 * 59.99782 * 3 2 1 32 32 H 1.08999 * 110.24975 * 316.03852 * 5 4 2 33 33 H 1.09005 * 110.24988 * 78.04064 * 5 4 2 34 34 H 1.09005 * 110.97035 * 216.46523 * 6 5 4 35 35 H 1.09001 * 110.97345 * 92.70502 * 6 5 4 36 36 H 1.08998 * 109.46320 * 54.14149 * 10 9 7 37 37 H 1.08998 * 109.45897 * 294.17759 * 10 9 7 38 38 H 1.09003 * 109.49792 * 299.23877 * 11 10 9 39 39 H 1.08997 * 109.53473 * 179.13824 * 11 10 9 40 40 H 1.09002 * 109.52261 * 62.25263 * 12 11 10 41 41 H 0.97002 * 120.00065 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.50326 * 177.59202 * 21 12 11 43 43 H 1.08999 * 109.50267 * 297.71858 * 21 12 11 44 44 H 1.09002 * 109.46123 * 305.85896 * 22 9 7 45 45 H 1.08999 * 109.45959 * 65.82235 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8646 -1.8894 1.1728 6 6 2.7596 -2.4958 2.5897 7 6 2.4036 -1.2534 3.4387 8 1 1.7077 -1.5193 4.2344 9 7 3.6189 -0.6494 4.0010 10 6 3.3031 0.5822 4.7355 11 6 4.5651 1.1032 5.4270 12 6 5.6423 1.3767 4.3738 13 6 6.9068 1.8345 5.0540 14 1 6.9393 1.9240 6.1298 15 6 8.0222 2.1393 4.3029 16 7 7.9827 2.0299 2.9929 17 14 9.5898 2.7060 5.1460 18 1 9.3755 2.7448 6.6150 19 1 10.6910 1.7609 4.8307 20 1 9.9489 4.0634 4.6626 21 6 5.9180 0.0901 3.5909 22 6 4.6168 -0.4015 2.9525 23 6 1.7483 -0.3080 2.4562 24 8 1.0776 0.6554 2.7610 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.4952 -2.5976 0.4311 33 1 3.8974 -1.6179 0.9543 34 1 3.7125 -2.9224 2.9031 35 1 1.9657 -3.2412 2.6372 36 1 2.5389 0.3730 5.4839 37 1 2.9332 1.3353 4.0397 38 1 4.9278 0.3561 6.1331 39 1 4.3344 2.0257 5.9597 40 1 5.2952 2.1517 3.6905 41 1 8.7675 2.2439 2.4644 42 1 6.6533 0.2890 2.8112 43 1 6.3020 -0.6728 4.2681 44 1 4.8067 -1.3253 2.4061 45 1 4.2407 0.3562 2.2651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335439448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:49 Heat of formation + Delta-G solvation = -33.741547 kcal Electronic energy + Delta-G solvation = -23926.776602 eV Core-core repulsion = 20750.790822 eV Total energy + Delta-G solvation = -3175.985780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98417 -37.72224 -36.32319 -35.06792 -33.10994 -31.10289 -29.86335 -29.07719 -27.20391 -27.14123 -25.00741 -22.65320 -22.25495 -21.84775 -20.83625 -18.97885 -18.21085 -17.05689 -16.42176 -16.19454 -15.30720 -14.70220 -14.47529 -14.31653 -14.13764 -13.72354 -13.60478 -13.08335 -12.95343 -12.86024 -12.48305 -12.33560 -12.26791 -12.05713 -11.79173 -11.57007 -11.29819 -11.25449 -11.22640 -11.02218 -10.91389 -10.67143 -10.38500 -10.15156 -10.01137 -9.72968 -9.39960 -8.93342 -8.71854 -8.54945 -8.27354 -7.74768 -5.95538 -4.00339 2.75464 3.03526 3.31595 3.39662 3.44215 4.24297 4.46880 4.51558 4.54207 4.86541 4.97088 5.04386 5.10033 5.16901 5.34630 5.43062 5.57014 5.63290 5.67424 5.72277 5.75982 5.86478 5.89405 5.91870 6.02835 6.13373 6.16796 6.22367 6.33244 6.39583 6.57204 6.69059 6.72189 6.89807 7.09013 7.13195 7.24996 7.41133 7.57426 7.62367 7.82053 8.07045 8.16281 8.36142 8.50743 9.03610 9.63978 11.10780 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.004924 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.871190 B = 5685.107394 C = 5959.952729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.169 4.169 4 N -0.615 5.615 5 C 0.095 3.905 6 C -0.128 4.128 7 C 0.050 3.950 8 H 0.108 0.892 9 N -0.504 5.504 10 C 0.056 3.944 11 C -0.106 4.106 12 C 0.047 3.953 13 C -0.507 4.507 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.103 4.103 22 C 0.046 3.954 23 C 0.494 3.506 24 O -0.527 6.527 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 -9.577 -6.716 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.351 5.351 5 C -0.028 4.028 6 C -0.166 4.166 7 C -0.062 4.062 8 H 0.126 0.874 9 N -0.229 5.229 10 C -0.071 4.071 11 C -0.143 4.143 12 C 0.029 3.971 13 C -0.546 4.546 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.142 4.142 22 C -0.081 4.081 23 C 0.280 3.720 24 O -0.402 6.402 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.012 -9.317 -6.437 16.508 hybrid contribution 0.586 0.884 -0.361 1.120 sum -11.426 -8.433 -6.798 15.745 Atomic orbital electron populations 1.22158 0.94998 1.01973 1.03136 1.20900 0.94134 0.93351 0.86598 1.22184 1.01833 0.95628 1.03032 1.48513 1.51161 1.29254 1.06141 1.22328 0.95676 0.86418 0.98388 1.22693 1.04250 0.96576 0.93062 1.22667 0.93917 0.94028 0.95583 0.87394 1.62468 1.06577 1.28532 1.25364 1.22198 0.98543 0.89576 0.96824 1.21687 0.94427 0.98998 0.99231 1.18687 0.92632 0.93180 0.92631 1.21258 0.96380 1.43708 0.93227 0.92665 1.24964 0.98685 0.95561 0.94807 1.69885 1.29442 1.49495 1.04443 0.86583 0.83586 0.78265 0.79842 1.19808 1.21093 1.21180 1.21670 0.93653 0.97905 1.00927 1.22579 0.94369 0.98660 0.92471 1.22041 0.79558 0.86145 0.84305 1.90651 1.39285 1.28771 1.81528 0.91711 0.92759 0.91070 0.89821 0.92099 0.91783 0.91011 0.90771 0.90380 0.87953 0.89853 0.92184 0.94513 0.92464 0.93067 0.96285 0.93224 0.88882 0.93701 0.91818 0.95727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.20 37.15 0.34 -1.48 16 2 C 0.15 1.83 3.47 -67.93 -0.24 1.59 16 3 C -0.17 -2.29 9.20 37.16 0.34 -1.95 16 4 N -0.62 -8.25 2.67 -164.85 -0.44 -8.69 16 5 C 0.09 1.03 6.42 -3.12 -0.02 1.01 16 6 C -0.13 -1.38 6.20 -25.10 -0.16 -1.54 16 7 C 0.05 0.74 3.29 -67.73 -0.22 0.52 16 8 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 9 N -0.50 -8.94 4.70 -226.71 -1.07 -10.00 16 10 C 0.06 1.10 4.95 -3.83 -0.02 1.08 16 11 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 12 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 13 C -0.51 -14.08 8.57 -34.44 -0.30 -14.38 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 16 N -0.89 -25.48 11.36 55.43 0.63 -24.85 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.10 -2.41 5.12 -26.65 -0.14 -2.55 16 22 C 0.05 0.88 3.85 -3.83 -0.01 0.86 16 23 C 0.49 8.00 5.22 -10.86 -0.06 7.94 16 24 O -0.53 -10.22 13.85 5.56 0.08 -10.14 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 28 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.19 6.77 -51.93 -0.35 0.83 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.91 6.13 -51.93 -0.32 0.59 16 34 H 0.10 1.11 7.32 -51.93 -0.38 0.73 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 37 H 0.04 0.80 6.66 -51.93 -0.35 0.45 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 43 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.04 4.71 -51.93 -0.24 0.80 16 45 H 0.02 0.51 7.32 -51.93 -0.38 0.13 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -30.61 335.39 -9.40 -40.01 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.73 Total: 1.00 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.91 Total: -8.76 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.88 Total: -43.54 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.61 -9.40 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335439448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.269 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds