Wall clock time and date at job start Tue Mar 31 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47435 * 2 1 4 4 N 1.46506 * 109.47126 * 120.00098 * 2 1 3 5 5 C 1.46758 * 124.34956 * 119.94846 * 4 2 1 6 6 C 1.54482 * 105.47136 * 197.03859 * 5 4 2 7 7 C 1.54632 * 101.76427 * 334.58338 * 6 5 4 8 8 H 1.08998 * 110.59378 * 143.53283 * 7 6 5 9 9 N 1.46899 * 110.48910 * 266.11916 * 7 6 5 10 10 C 1.46841 * 111.00281 * 176.23046 * 9 7 6 11 11 C 1.53042 * 109.52629 * 174.16212 * 10 9 7 12 12 C 1.53117 * 109.27613 * 59.17734 * 11 10 9 13 13 C 1.50706 * 109.51923 * 182.37896 * 12 11 10 14 14 H 1.07998 * 120.00003 * 359.86961 * 13 12 11 15 15 C 1.37879 * 119.99691 * 179.87708 * 13 12 11 16 16 N 1.31514 * 120.00149 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99852 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47030 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47177 * 119.99514 * 17 15 13 20 20 H 1.48494 * 109.47156 * 239.99452 * 17 15 13 21 21 C 1.53120 * 109.16267 * 302.34396 * 12 11 10 22 22 C 1.46850 * 110.99956 * 52.01734 * 9 7 6 23 23 C 1.34423 * 124.34703 * 299.97217 * 4 2 1 24 24 O 1.21279 * 124.94178 * 359.53697 * 23 4 2 25 25 H 1.09002 * 109.46754 * 60.00034 * 1 2 3 26 26 H 1.08997 * 109.47356 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47009 * 300.00452 * 1 2 3 28 28 H 1.09006 * 109.47352 * 239.99651 * 2 1 3 29 29 H 1.09004 * 109.47506 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47122 * 299.99740 * 3 2 1 31 31 H 1.08999 * 109.47391 * 59.99782 * 3 2 1 32 32 H 1.08999 * 110.24975 * 316.03852 * 5 4 2 33 33 H 1.09005 * 110.24988 * 78.04064 * 5 4 2 34 34 H 1.09005 * 110.97035 * 216.46523 * 6 5 4 35 35 H 1.09001 * 110.97345 * 92.70502 * 6 5 4 36 36 H 1.08998 * 109.46320 * 54.14149 * 10 9 7 37 37 H 1.08998 * 109.45897 * 294.17759 * 10 9 7 38 38 H 1.09003 * 109.49792 * 299.23877 * 11 10 9 39 39 H 1.08997 * 109.53473 * 179.13824 * 11 10 9 40 40 H 1.09002 * 109.52261 * 62.25263 * 12 11 10 41 41 H 0.97002 * 120.00065 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.50326 * 177.59202 * 21 12 11 43 43 H 1.08999 * 109.50267 * 297.71858 * 21 12 11 44 44 H 1.09002 * 109.46123 * 305.85896 * 22 9 7 45 45 H 1.08999 * 109.45959 * 65.82235 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8646 -1.8894 1.1728 6 6 2.7596 -2.4958 2.5897 7 6 2.4036 -1.2534 3.4387 8 1 1.7077 -1.5193 4.2344 9 7 3.6189 -0.6494 4.0010 10 6 3.3031 0.5822 4.7355 11 6 4.5651 1.1032 5.4270 12 6 5.6423 1.3767 4.3738 13 6 6.9068 1.8345 5.0540 14 1 6.9393 1.9240 6.1298 15 6 8.0222 2.1393 4.3029 16 7 7.9827 2.0299 2.9929 17 14 9.5898 2.7060 5.1460 18 1 9.3755 2.7448 6.6150 19 1 10.6910 1.7609 4.8307 20 1 9.9489 4.0634 4.6626 21 6 5.9180 0.0901 3.5909 22 6 4.6168 -0.4015 2.9525 23 6 1.7483 -0.3080 2.4562 24 8 1.0776 0.6554 2.7610 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.4952 -2.5976 0.4311 33 1 3.8974 -1.6179 0.9543 34 1 3.7125 -2.9224 2.9031 35 1 1.9657 -3.2412 2.6372 36 1 2.5389 0.3730 5.4839 37 1 2.9332 1.3353 4.0397 38 1 4.9278 0.3561 6.1331 39 1 4.3344 2.0257 5.9597 40 1 5.2952 2.1517 3.6905 41 1 8.7675 2.2439 2.4644 42 1 6.6533 0.2890 2.8112 43 1 6.3020 -0.6728 4.2681 44 1 4.8067 -1.3253 2.4061 45 1 4.2407 0.3562 2.2651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335439448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:49 Heat of formation + Delta-G solvation = -53.460868 kcal Electronic energy + Delta-G solvation = -23927.631696 eV Core-core repulsion = 20750.790822 eV Total energy + Delta-G solvation = -3176.840874 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.17327 -39.26393 -37.53913 -36.43638 -34.79764 -32.81530 -31.56751 -30.25860 -28.54493 -28.19011 -26.78884 -24.02937 -23.81370 -23.20921 -22.11150 -20.57704 -19.60444 -18.56311 -18.03595 -17.52417 -16.58078 -16.43829 -15.79186 -15.75559 -15.48944 -15.01407 -14.75378 -14.54449 -14.41326 -14.33630 -14.04200 -13.92148 -13.65247 -13.08143 -13.00440 -12.92719 -12.79268 -12.68490 -12.50122 -12.35696 -12.29104 -12.21763 -11.99447 -11.85239 -11.82783 -11.41476 -10.98524 -10.84772 -10.65562 -10.39786 -9.65219 -9.22900 -8.09116 -6.22728 1.39740 1.41469 1.52320 1.53292 2.03966 2.43351 2.89356 3.17722 3.43895 3.54670 3.89986 4.01479 4.06142 4.10701 4.20306 4.24405 4.27841 4.37726 4.50880 4.57372 4.63588 4.65514 4.68991 4.76405 4.80132 4.84810 4.86688 4.93059 5.03371 5.09354 5.13067 5.17140 5.20343 5.24997 5.30196 5.52366 5.60501 5.70937 5.93429 5.95983 6.12488 6.18892 6.22544 6.38591 6.88019 7.18543 7.45172 8.95983 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.004924 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.871190 B = 5685.107394 C = 5959.952729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 C -0.165 4.165 4 N -0.612 5.612 5 C 0.088 3.912 6 C -0.116 4.116 7 C 0.043 3.957 8 H 0.120 0.880 9 N -0.501 5.501 10 C 0.067 3.933 11 C -0.098 4.098 12 C 0.045 3.955 13 C -0.533 4.533 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.955 3.045 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.283 1.283 21 C -0.094 4.094 22 C 0.064 3.936 23 C 0.482 3.518 24 O -0.571 6.571 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.119 0.881 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.032 0.968 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.008 0.992 38 H 0.062 0.938 39 H 0.046 0.954 40 H -0.026 1.026 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.099 0.901 45 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.271 -12.186 -7.470 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 C -0.223 4.223 4 N -0.346 5.346 5 C -0.033 4.033 6 C -0.153 4.153 7 C -0.068 4.068 8 H 0.138 0.862 9 N -0.226 5.226 10 C -0.061 4.061 11 C -0.136 4.136 12 C 0.026 3.974 13 C -0.571 4.571 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.558 5.558 17 Si 0.780 3.220 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.209 1.209 21 C -0.133 4.133 22 C -0.063 4.063 23 C 0.268 3.732 24 O -0.449 6.449 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.137 0.863 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.026 0.974 38 H 0.080 0.920 39 H 0.065 0.935 40 H -0.008 1.008 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -12.329 -11.959 -7.210 18.628 hybrid contribution 0.666 1.741 -0.173 1.872 sum -11.663 -10.218 -7.383 17.174 Atomic orbital electron populations 1.22075 0.94059 1.02750 1.02490 1.21131 0.94903 0.92236 0.87254 1.22142 1.00388 0.97356 1.02374 1.48679 1.50474 1.29753 1.05702 1.22578 0.94978 0.86037 0.99740 1.22769 1.05805 0.95189 0.91550 1.22876 0.92486 0.95096 0.96380 0.86230 1.62423 1.08110 1.26968 1.25052 1.22003 0.97461 0.89890 0.96730 1.21552 0.94540 0.99123 0.98378 1.18645 0.92951 0.92927 0.92853 1.21585 0.97689 1.44539 0.93250 0.93058 1.25737 1.01797 0.95512 0.95435 1.70024 1.30325 1.49783 1.05644 0.85557 0.79663 0.77810 0.78933 1.19254 1.20144 1.20919 1.21424 0.95331 0.96753 0.99754 1.22330 0.92573 0.99312 0.92091 1.22333 0.79387 0.85813 0.85671 1.90628 1.41367 1.30528 1.82392 0.89632 0.91181 0.94426 0.86320 0.94117 0.89255 0.94827 0.86666 0.91306 0.87348 0.86373 0.90132 0.97389 0.91952 0.93525 1.00811 0.93052 0.91772 0.94001 0.88327 0.98154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.20 71.98 0.66 -2.50 16 2 C 0.15 3.25 3.47 44.99 0.16 3.40 16 3 C -0.16 -4.55 9.20 71.98 0.66 -3.89 16 4 N -0.61 -15.35 2.67 -794.04 -2.12 -17.47 16 5 C 0.09 1.59 6.42 86.83 0.56 2.15 16 6 C -0.12 -2.03 6.20 31.65 0.20 -1.83 16 7 C 0.04 1.19 3.29 44.91 0.15 1.34 16 8 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 9 N -0.50 -17.39 4.70 -871.17 -4.10 -21.49 16 10 C 0.07 2.68 4.95 86.33 0.43 3.10 16 11 C -0.10 -4.42 5.32 30.65 0.16 -4.26 16 12 C 0.04 2.38 2.16 -11.46 -0.02 2.35 16 13 C -0.53 -30.46 8.57 25.60 0.22 -30.24 16 14 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 15 C 0.01 0.76 5.31 84.66 0.45 1.21 16 16 N -0.92 -53.83 11.36 21.45 0.24 -53.58 16 17 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 C -0.09 -4.51 5.12 30.65 0.16 -4.36 16 22 C 0.06 2.44 3.85 86.33 0.33 2.77 16 23 C 0.48 15.42 5.22 87.89 0.46 15.88 16 24 O -0.57 -22.94 13.85 -3.03 -0.04 -22.98 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.03 6.80 -2.39 -0.02 1.01 16 28 H 0.12 1.85 8.07 -2.38 -0.02 1.83 16 29 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.03 1.17 6.77 -2.39 -0.02 1.16 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.40 6.13 -2.38 -0.01 1.39 16 34 H 0.11 1.86 7.32 -2.38 -0.02 1.85 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 37 H 0.01 0.36 6.66 -2.39 -0.02 0.34 16 38 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 41 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.06 3.44 6.17 -2.39 -0.01 3.43 16 43 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.10 3.06 4.71 -2.39 -0.01 3.05 16 45 H 0.00 0.01 7.32 -2.39 -0.02 -0.01 16 Total: -1.00 -71.15 335.39 1.53 -69.63 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.95 Total: 14.34 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 4.56 Total: -14.87 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -5.97 Total: -92.54 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.04 Total: -22.98 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.15 1.53 -69.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335439448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.167 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds