Wall clock time and date at job start Tue Mar 31 2020 02:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47430 * 2 1 4 4 N 1.46496 * 109.47127 * 181.45239 * 3 2 1 5 5 C 1.37095 * 120.00076 * 262.80424 * 4 3 2 6 6 H 1.08003 * 119.99971 * 193.07183 * 5 4 3 7 7 C 1.38947 * 120.00148 * 13.06482 * 5 4 3 8 8 N 1.31415 * 119.99964 * 12.97694 * 7 5 4 9 9 Si 1.86801 * 120.00303 * 192.97869 * 7 5 4 10 10 H 1.48502 * 109.47109 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47232 * 120.00213 * 9 7 5 12 12 H 1.48503 * 109.46911 * 240.00181 * 9 7 5 13 13 C 1.34778 * 120.00112 * 82.80652 * 4 3 2 14 14 O 1.21296 * 119.99855 * 355.16847 * 13 4 3 15 15 C 1.50696 * 120.00083 * 175.16403 * 13 4 3 16 16 H 1.09000 * 109.47661 * 336.55025 * 15 13 4 17 17 C 1.53005 * 109.46798 * 96.55064 * 15 13 4 18 18 C 1.52995 * 117.49835 * 1.97014 * 17 15 13 19 19 C 1.53002 * 117.49851 * 293.31243 * 17 15 13 20 20 N 1.46900 * 109.47007 * 216.54672 * 15 13 4 21 21 C 1.48532 * 111.00395 * 286.98850 * 20 15 13 22 22 C 1.54940 * 103.22556 * 159.71915 * 21 20 15 23 23 C 1.54595 * 102.92386 * 322.59326 * 22 21 20 24 24 C 1.47900 * 111.00052 * 44.39514 * 20 15 13 25 25 H 1.08996 * 109.47687 * 64.92224 * 1 2 3 26 26 H 1.09002 * 109.46925 * 184.92372 * 1 2 3 27 27 H 1.09005 * 109.47084 * 304.91844 * 1 2 3 28 28 H 1.09005 * 109.46872 * 240.00011 * 2 1 3 29 29 H 1.09007 * 109.47342 * 120.00470 * 2 1 3 30 30 H 1.08999 * 109.46613 * 61.45037 * 3 2 1 31 31 H 1.08998 * 109.46869 * 301.45416 * 3 2 1 32 32 H 0.96996 * 120.00193 * 179.97438 * 8 7 5 33 33 H 1.09003 * 115.54784 * 147.63897 * 17 15 13 34 34 H 1.09006 * 117.50214 * 0.02562 * 18 17 15 35 35 H 1.09004 * 117.49741 * 145.01822 * 18 17 15 36 36 H 1.08999 * 117.49523 * 214.98170 * 19 17 15 37 37 H 1.08998 * 117.49482 * 359.97438 * 19 17 15 38 38 H 1.08998 * 110.67094 * 278.16320 * 21 20 15 39 39 H 1.09007 * 110.66419 * 41.29257 * 21 20 15 40 40 H 1.08999 * 110.72123 * 204.22716 * 22 21 20 41 41 H 1.09003 * 110.71979 * 80.95200 * 22 21 20 42 42 H 1.08999 * 110.30381 * 263.03638 * 23 22 21 43 43 H 1.08997 * 110.30540 * 140.87474 * 23 22 21 44 44 H 1.08997 * 109.91701 * 333.49944 * 24 20 15 45 45 H 1.08992 * 109.92050 * 94.60041 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5046 1.4425 -0.0350 5 6 4.2181 1.5813 1.1274 6 1 5.2765 1.7929 1.0894 7 6 3.5795 1.4500 2.3544 8 7 2.3668 0.9470 2.4136 9 14 4.4447 1.9883 3.9201 10 1 5.7911 2.5173 3.5847 11 1 3.6480 3.0499 4.5859 12 1 4.5825 0.8260 4.8341 13 6 4.1506 1.3062 -1.2100 14 8 3.5229 1.0958 -2.2263 15 6 5.6528 1.4153 -1.2610 16 1 6.0044 1.9938 -0.4068 17 6 6.2675 0.0149 -1.2165 18 6 5.3086 -1.1767 -1.1798 19 6 6.0980 -0.7904 0.0734 20 7 6.0530 2.0863 -2.5050 21 6 5.8731 1.1896 -3.6753 22 6 5.8209 2.1735 -4.8711 23 6 5.0401 3.3769 -4.2949 24 6 5.2023 3.2675 -2.7674 25 1 -0.3634 0.4355 -0.9307 26 1 -0.3633 -1.0239 0.0882 27 1 -0.3633 0.5883 0.8427 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6981 1.9487 0.9027 31 1 1.6556 1.9637 -0.8767 32 1 1.9212 0.8550 3.2701 33 1 7.2005 -0.1067 -1.7668 34 1 4.2397 -0.9631 -1.1878 35 1 5.6109 -2.0824 -1.7057 36 1 6.9194 -1.4419 0.3715 37 1 5.5489 -0.3222 0.8904 38 1 6.7196 0.5099 -3.7729 39 1 4.9392 0.6334 -3.5938 40 1 5.2844 1.7318 -5.7108 41 1 6.8260 2.4725 -5.1686 42 1 3.9873 3.3111 -4.5692 43 1 5.4678 4.3126 -4.6547 44 1 4.2272 3.1342 -2.2991 45 1 5.6821 4.1648 -2.3768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352447969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:57 Heat of formation + Delta-G solvation = 13.348788 kcal Electronic energy + Delta-G solvation = -24510.774564 eV Core-core repulsion = 21336.830774 eV Total energy + Delta-G solvation = -3173.943790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07605 -37.38283 -36.06905 -35.01118 -32.36782 -31.52556 -31.14234 -28.34387 -26.58414 -25.48946 -24.11507 -21.72393 -21.43206 -20.89046 -20.21049 -19.66889 -18.82647 -16.68972 -16.38174 -15.93807 -15.26392 -14.59776 -14.31770 -13.99758 -13.74366 -13.65815 -13.52981 -12.87307 -12.62147 -12.19416 -12.04183 -11.88137 -11.55853 -11.42896 -11.17897 -10.99677 -10.85256 -10.81504 -10.74545 -10.65032 -10.55116 -10.34450 -10.31399 -10.14242 -9.98968 -9.63109 -9.60252 -9.36874 -8.91742 -8.79139 -7.75599 -7.38193 -6.34554 -3.94614 3.05624 3.18400 3.20935 3.80939 4.03070 4.38770 4.60763 4.86593 4.97516 5.14730 5.21197 5.40019 5.53207 5.65881 5.71609 5.91821 5.94212 6.03833 6.12338 6.14391 6.15900 6.19208 6.23920 6.31520 6.32553 6.41298 6.44368 6.51147 6.54609 6.62699 6.70073 6.80421 6.87700 6.91151 7.02577 7.05140 7.09417 7.29015 7.45242 7.48781 7.62284 7.73961 7.81053 8.41061 9.02483 9.49715 9.89077 10.58076 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.007299 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.985997 B = 3835.427599 C = 4299.095962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C 0.137 3.863 4 N -0.437 5.437 5 C -0.329 4.329 6 H 0.101 0.899 7 C 0.035 3.965 8 N -0.859 5.859 9 Si 0.917 3.083 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.440 3.560 14 O -0.603 6.603 15 C 0.095 3.905 16 H 0.101 0.899 17 C -0.136 4.136 18 C -0.178 4.178 19 C -0.181 4.181 20 N -0.496 5.496 21 C 0.026 3.974 22 C -0.120 4.120 23 C -0.121 4.121 24 C 0.031 3.969 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 0.351 -4.721 6.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C 0.014 3.986 4 N -0.154 5.154 5 C -0.456 4.456 6 H 0.119 0.881 7 C -0.169 4.169 8 N -0.498 5.498 9 Si 0.744 3.256 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.228 3.772 14 O -0.491 6.491 15 C -0.017 4.017 16 H 0.118 0.882 17 C -0.155 4.155 18 C -0.215 4.215 19 C -0.218 4.218 20 N -0.220 5.220 21 C -0.101 4.101 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.097 4.097 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.142 0.858 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.933 0.384 -4.950 6.334 hybrid contribution -0.477 -0.027 0.909 1.027 sum 3.456 0.357 -4.041 5.329 Atomic orbital electron populations 1.21585 0.97803 0.99808 1.00150 1.21695 0.93528 0.98546 1.01430 1.21405 0.79991 0.96805 1.00374 1.43981 1.05681 1.60243 1.05477 1.19747 0.94658 1.48104 0.83118 0.88102 1.25209 0.96255 0.96278 0.99182 1.70086 1.13059 1.41057 1.25643 0.86012 0.79521 0.78516 0.81600 1.19232 1.20661 1.20704 1.20708 0.89886 0.82488 0.84128 1.90490 1.68411 1.55878 1.34354 1.21435 0.91947 0.94370 0.93963 0.88154 1.21958 1.00098 0.90844 1.02613 1.23053 0.99016 0.97665 1.01726 1.23311 1.02551 1.02815 0.93169 1.65223 1.49054 1.05959 1.01714 1.23384 1.02210 0.95574 0.88949 1.22411 0.99600 0.96191 0.97648 1.22256 1.00233 0.98023 0.95385 1.22887 0.97175 0.93860 0.95746 0.94601 0.94391 0.93003 0.94897 0.89211 0.87605 0.95594 0.92254 0.87892 0.87912 0.90215 0.90035 0.85783 0.91671 0.89726 0.91904 0.91903 0.91819 0.92185 0.92020 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 37.16 0.37 -2.22 16 2 C -0.11 -2.55 5.68 -26.73 -0.15 -2.70 16 3 C 0.14 3.25 4.47 -4.04 -0.02 3.23 16 4 N -0.44 -10.35 2.64 -114.82 -0.30 -10.66 16 5 C -0.33 -7.73 7.02 -14.94 -0.10 -7.83 16 6 H 0.10 2.31 5.42 -52.48 -0.28 2.03 16 7 C 0.03 0.81 5.15 -17.47 -0.09 0.72 16 8 N -0.86 -20.50 8.16 55.50 0.45 -20.05 16 9 Si 0.92 18.59 29.57 -169.99 -5.03 13.56 16 10 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.44 9.99 2.69 -10.99 -0.03 9.96 16 14 O -0.60 -14.79 12.07 5.54 0.07 -14.72 16 15 C 0.09 1.91 2.36 -68.86 -0.16 1.75 16 16 H 0.10 2.11 5.89 -51.93 -0.31 1.81 16 17 C -0.14 -2.50 4.66 -90.62 -0.42 -2.93 16 18 C -0.18 -3.37 9.65 -26.70 -0.26 -3.63 16 19 C -0.18 -3.31 10.07 -26.69 -0.27 -3.58 16 20 N -0.50 -9.30 5.42 -223.89 -1.21 -10.51 16 21 C 0.03 0.46 5.11 -1.90 -0.01 0.45 16 22 C -0.12 -1.81 7.06 -24.87 -0.18 -1.99 16 23 C -0.12 -1.91 6.93 -25.37 -0.18 -2.08 16 24 C 0.03 0.58 6.15 -2.75 -0.02 0.56 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.78 7.86 -51.93 -0.41 0.37 16 29 H 0.09 2.18 6.41 -51.92 -0.33 1.85 16 30 H 0.11 2.62 5.69 -51.93 -0.30 2.33 16 31 H 0.03 0.63 7.72 -51.93 -0.40 0.23 16 32 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 33 H 0.10 1.75 7.47 -51.93 -0.39 1.36 16 34 H 0.10 2.31 6.16 -51.93 -0.32 1.99 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.12 2.58 5.46 -51.93 -0.28 2.30 16 38 H 0.06 1.06 7.43 -51.93 -0.39 0.67 16 39 H 0.08 1.74 5.65 -51.93 -0.29 1.45 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.33 5.28 -51.93 -0.27 1.06 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -24.91 332.26 -9.87 -34.78 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.33 Total: 12.89 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.52 Total: -10.30 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -1.06 Total: -41.21 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.07 Total: -14.72 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -24.91 -9.87 -34.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352447969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.128 kcal (2) G-P(sol) polarization free energy of solvation -24.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds