Wall clock time and date at job start Tue Mar 31 2020 02:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47430 * 2 1 4 4 N 1.46496 * 109.47127 * 181.45239 * 3 2 1 5 5 C 1.37095 * 120.00076 * 262.80424 * 4 3 2 6 6 H 1.08003 * 119.99971 * 193.07183 * 5 4 3 7 7 C 1.38947 * 120.00148 * 13.06482 * 5 4 3 8 8 N 1.31415 * 119.99964 * 12.97694 * 7 5 4 9 9 Si 1.86801 * 120.00303 * 192.97869 * 7 5 4 10 10 H 1.48502 * 109.47109 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47232 * 120.00213 * 9 7 5 12 12 H 1.48503 * 109.46911 * 240.00181 * 9 7 5 13 13 C 1.34778 * 120.00112 * 82.80652 * 4 3 2 14 14 O 1.21296 * 119.99855 * 355.16847 * 13 4 3 15 15 C 1.50696 * 120.00083 * 175.16403 * 13 4 3 16 16 H 1.09000 * 109.47661 * 336.55025 * 15 13 4 17 17 C 1.53005 * 109.46798 * 96.55064 * 15 13 4 18 18 C 1.52995 * 117.49835 * 1.97014 * 17 15 13 19 19 C 1.53002 * 117.49851 * 293.31243 * 17 15 13 20 20 N 1.46900 * 109.47007 * 216.54672 * 15 13 4 21 21 C 1.48532 * 111.00395 * 286.98850 * 20 15 13 22 22 C 1.54940 * 103.22556 * 159.71915 * 21 20 15 23 23 C 1.54595 * 102.92386 * 322.59326 * 22 21 20 24 24 C 1.47900 * 111.00052 * 44.39514 * 20 15 13 25 25 H 1.08996 * 109.47687 * 64.92224 * 1 2 3 26 26 H 1.09002 * 109.46925 * 184.92372 * 1 2 3 27 27 H 1.09005 * 109.47084 * 304.91844 * 1 2 3 28 28 H 1.09005 * 109.46872 * 240.00011 * 2 1 3 29 29 H 1.09007 * 109.47342 * 120.00470 * 2 1 3 30 30 H 1.08999 * 109.46613 * 61.45037 * 3 2 1 31 31 H 1.08998 * 109.46869 * 301.45416 * 3 2 1 32 32 H 0.96996 * 120.00193 * 179.97438 * 8 7 5 33 33 H 1.09003 * 115.54784 * 147.63897 * 17 15 13 34 34 H 1.09006 * 117.50214 * 0.02562 * 18 17 15 35 35 H 1.09004 * 117.49741 * 145.01822 * 18 17 15 36 36 H 1.08999 * 117.49523 * 214.98170 * 19 17 15 37 37 H 1.08998 * 117.49482 * 359.97438 * 19 17 15 38 38 H 1.08998 * 110.67094 * 278.16320 * 21 20 15 39 39 H 1.09007 * 110.66419 * 41.29257 * 21 20 15 40 40 H 1.08999 * 110.72123 * 204.22716 * 22 21 20 41 41 H 1.09003 * 110.71979 * 80.95200 * 22 21 20 42 42 H 1.08999 * 110.30381 * 263.03638 * 23 22 21 43 43 H 1.08997 * 110.30540 * 140.87474 * 23 22 21 44 44 H 1.08997 * 109.91701 * 333.49944 * 24 20 15 45 45 H 1.08992 * 109.92050 * 94.60041 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5046 1.4425 -0.0350 5 6 4.2181 1.5813 1.1274 6 1 5.2765 1.7929 1.0894 7 6 3.5795 1.4500 2.3544 8 7 2.3668 0.9470 2.4136 9 14 4.4447 1.9883 3.9201 10 1 5.7911 2.5173 3.5847 11 1 3.6480 3.0499 4.5859 12 1 4.5825 0.8260 4.8341 13 6 4.1506 1.3062 -1.2100 14 8 3.5229 1.0958 -2.2263 15 6 5.6528 1.4153 -1.2610 16 1 6.0044 1.9938 -0.4068 17 6 6.2675 0.0149 -1.2165 18 6 5.3086 -1.1767 -1.1798 19 6 6.0980 -0.7904 0.0734 20 7 6.0530 2.0863 -2.5050 21 6 5.8731 1.1896 -3.6753 22 6 5.8209 2.1735 -4.8711 23 6 5.0401 3.3769 -4.2949 24 6 5.2023 3.2675 -2.7674 25 1 -0.3634 0.4355 -0.9307 26 1 -0.3633 -1.0239 0.0882 27 1 -0.3633 0.5883 0.8427 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6981 1.9487 0.9027 31 1 1.6556 1.9637 -0.8767 32 1 1.9212 0.8550 3.2701 33 1 7.2005 -0.1067 -1.7668 34 1 4.2397 -0.9631 -1.1878 35 1 5.6109 -2.0824 -1.7057 36 1 6.9194 -1.4419 0.3715 37 1 5.5489 -0.3222 0.8904 38 1 6.7196 0.5099 -3.7729 39 1 4.9392 0.6334 -3.5938 40 1 5.2844 1.7318 -5.7108 41 1 6.8260 2.4725 -5.1686 42 1 3.9873 3.3111 -4.5692 43 1 5.4678 4.3126 -4.6547 44 1 4.2272 3.1342 -2.2991 45 1 5.6821 4.1648 -2.3768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352447969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:56 Heat of formation + Delta-G solvation = 0.184209 kcal Electronic energy + Delta-G solvation = -24511.345423 eV Core-core repulsion = 21336.830774 eV Total energy + Delta-G solvation = -3174.514649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73345 -38.98862 -37.59164 -36.82774 -34.13480 -33.30096 -32.64956 -29.73785 -28.23766 -27.21766 -25.84212 -23.24092 -23.00803 -22.39754 -21.81294 -21.21704 -20.57604 -18.37213 -18.14237 -17.53715 -16.74663 -16.32010 -15.94004 -15.58970 -15.38466 -15.28345 -15.10162 -14.54235 -14.28069 -13.74820 -13.59250 -13.50034 -13.15355 -13.05717 -12.80919 -12.54757 -12.51791 -12.33547 -12.28046 -12.17226 -12.04124 -11.96437 -11.86354 -11.80648 -11.45688 -11.36053 -11.11035 -10.96269 -10.71373 -10.50768 -9.61786 -9.03774 -8.14966 -5.80284 1.42075 1.51009 1.60842 2.05573 2.32213 2.84036 3.05038 3.15438 3.24799 3.75477 3.88035 4.04998 4.10172 4.17482 4.22248 4.28013 4.43132 4.49149 4.54443 4.60081 4.67552 4.72983 4.77144 4.82575 4.86228 4.89147 4.98906 5.06856 5.09596 5.11497 5.14284 5.24146 5.27685 5.30060 5.31196 5.44841 5.46825 5.51217 5.61675 5.85389 5.93217 5.97470 6.09137 6.55844 7.19410 7.67550 8.07564 8.78218 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.007299 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.985997 B = 3835.427599 C = 4299.095962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C 0.143 3.857 4 N -0.450 5.450 5 C -0.340 4.340 6 H 0.105 0.895 7 C -0.001 4.001 8 N -0.879 5.879 9 Si 0.978 3.022 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.442 3.558 14 O -0.626 6.626 15 C 0.098 3.902 16 H 0.090 0.910 17 C -0.129 4.129 18 C -0.182 4.182 19 C -0.174 4.174 20 N -0.490 5.490 21 C 0.024 3.976 22 C -0.112 4.112 23 C -0.117 4.117 24 C 0.028 3.972 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.011 0.989 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.128 0.872 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.022 0.978 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 0.360 -5.170 7.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.137 4.137 3 C 0.020 3.980 4 N -0.167 5.167 5 C -0.467 4.467 6 H 0.122 0.878 7 C -0.203 4.203 8 N -0.518 5.518 9 Si 0.803 3.197 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.207 1.207 13 C 0.231 3.769 14 O -0.515 6.515 15 C -0.014 4.014 16 H 0.108 0.892 17 C -0.148 4.148 18 C -0.219 4.219 19 C -0.211 4.211 20 N -0.213 5.213 21 C -0.103 4.103 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.101 4.101 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.041 0.959 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.803 0.394 -5.405 7.940 hybrid contribution -1.096 -0.028 1.011 1.491 sum 4.707 0.366 -4.395 6.450 Atomic orbital electron populations 1.21504 0.95111 1.01211 1.00642 1.21506 0.95835 0.97158 0.99236 1.21286 0.80637 0.97215 0.98857 1.44159 1.05656 1.60757 1.06137 1.19917 0.94903 1.48593 0.83282 0.87779 1.25893 0.96917 0.96078 1.01415 1.70174 1.14003 1.41422 1.26185 0.85073 0.78719 0.77754 0.78116 1.18543 1.20939 1.20727 1.21172 0.91046 0.81293 0.83375 1.90468 1.69303 1.56677 1.35069 1.21385 0.89898 0.95626 0.94524 0.89217 1.22005 1.00451 0.89389 1.02969 1.22935 0.96859 0.99064 1.03041 1.23275 1.02857 1.02877 0.92062 1.65278 1.48412 1.06079 1.01554 1.23389 1.01205 0.96079 0.89626 1.22425 1.00953 0.94875 0.96782 1.22255 1.00010 0.99976 0.93303 1.22930 0.95201 0.94244 0.97678 0.93820 0.92459 0.92784 0.97021 0.91118 0.88662 0.97143 0.92218 0.85442 0.91989 0.87679 0.86755 0.88518 0.89864 0.93089 0.90691 0.89526 0.93078 0.89312 0.95933 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.91 71.98 0.71 -4.15 16 2 C -0.10 -4.61 5.68 30.59 0.17 -4.43 16 3 C 0.14 7.09 4.47 86.38 0.39 7.48 16 4 N -0.45 -22.19 2.64 -635.55 -1.68 -23.87 16 5 C -0.34 -16.33 7.02 84.04 0.59 -15.74 16 6 H 0.10 4.84 5.42 -2.91 -0.02 4.83 16 7 C 0.00 -0.05 5.15 84.93 0.44 0.38 16 8 N -0.88 -42.76 8.16 21.66 0.18 -42.58 16 9 Si 0.98 38.16 29.57 68.60 2.03 40.19 16 10 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 11 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 13 C 0.44 20.77 2.69 87.66 0.24 21.00 16 14 O -0.63 -32.02 12.07 -3.08 -0.04 -32.06 16 15 C 0.10 3.95 2.36 44.17 0.10 4.05 16 16 H 0.09 3.80 5.89 -2.39 -0.01 3.79 16 17 C -0.13 -4.60 4.66 -10.79 -0.05 -4.65 16 18 C -0.18 -6.84 9.65 30.62 0.30 -6.55 16 19 C -0.17 -6.14 10.07 30.62 0.31 -5.83 16 20 N -0.49 -17.88 5.42 -862.24 -4.67 -22.55 16 21 C 0.02 0.82 5.11 86.65 0.44 1.26 16 22 C -0.11 -3.09 7.06 31.80 0.22 -2.87 16 23 C -0.12 -3.52 6.93 31.47 0.22 -3.30 16 24 C 0.03 1.01 6.15 86.45 0.53 1.54 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.01 0.56 7.86 -2.38 -0.02 0.54 16 29 H 0.07 3.57 6.41 -2.38 -0.02 3.55 16 30 H 0.10 4.91 5.69 -2.39 -0.01 4.90 16 31 H 0.01 0.53 7.72 -2.39 -0.02 0.51 16 32 H 0.27 12.43 8.31 -92.71 -0.77 11.66 16 33 H 0.13 3.93 7.47 -2.39 -0.02 3.92 16 34 H 0.06 2.88 6.16 -2.38 -0.01 2.87 16 35 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.10 4.03 5.46 -2.39 -0.01 4.02 16 38 H 0.08 2.48 7.43 -2.39 -0.02 2.46 16 39 H 0.05 2.10 5.65 -2.38 -0.01 2.09 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.02 1.00 5.28 -2.39 -0.01 0.99 16 45 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -55.43 332.26 1.40 -54.04 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: 0.97 Total: 38.65 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 4.61 Total: -11.81 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -6.18 Total: -89.00 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.04 Total: -32.06 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -55.43 1.40 -54.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352447969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.219 kcal (2) G-P(sol) polarization free energy of solvation -55.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds