Wall clock time and date at job start Tue Mar 31 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47605 * 2 1 4 4 N 1.46504 * 109.47288 * 174.07079 * 3 2 1 5 5 C 1.37090 * 120.00150 * 262.31946 * 4 3 2 6 6 H 1.07998 * 120.00474 * 188.11113 * 5 4 3 7 7 C 1.38952 * 120.00056 * 8.11483 * 5 4 3 8 8 N 1.31410 * 120.00134 * 27.40819 * 7 5 4 9 9 Si 1.86800 * 120.00081 * 207.41263 * 7 5 4 10 10 H 1.48499 * 109.47333 * 94.99003 * 9 7 5 11 11 H 1.48495 * 109.47155 * 214.99268 * 9 7 5 12 12 H 1.48509 * 109.46989 * 334.99157 * 9 7 5 13 13 C 1.34773 * 119.99787 * 82.31753 * 4 3 2 14 14 O 1.21294 * 120.00175 * 174.41284 * 13 4 3 15 15 C 1.50703 * 120.00439 * 354.68635 * 13 4 3 16 16 H 1.09008 * 109.46939 * 4.95658 * 15 13 4 17 17 C 1.52998 * 109.47637 * 244.95519 * 15 13 4 18 18 C 1.52995 * 117.50007 * 122.48579 * 17 15 13 19 19 C 1.52999 * 117.49617 * 53.82327 * 17 15 13 20 20 N 1.46898 * 109.47268 * 124.94922 * 15 13 4 21 21 C 1.48533 * 111.00289 * 177.60888 * 20 15 13 22 22 C 1.54932 * 103.22848 * 159.72131 * 21 20 15 23 23 C 1.54593 * 102.92598 * 322.58744 * 22 21 20 24 24 C 1.47906 * 111.00331 * 295.00703 * 20 15 13 25 25 H 1.09001 * 109.46734 * 304.91413 * 1 2 3 26 26 H 1.09002 * 109.46890 * 64.90150 * 1 2 3 27 27 H 1.09002 * 109.47444 * 184.90858 * 1 2 3 28 28 H 1.09005 * 109.46574 * 239.99110 * 2 1 3 29 29 H 1.09000 * 109.46867 * 120.00069 * 2 1 3 30 30 H 1.08996 * 109.47593 * 54.06930 * 3 2 1 31 31 H 1.08998 * 109.47090 * 294.06871 * 3 2 1 32 32 H 0.96997 * 120.00183 * 180.02562 * 8 7 5 33 33 H 1.09006 * 115.54739 * 268.16058 * 17 15 13 34 34 H 1.09004 * 117.50030 * 359.97438 * 18 17 15 35 35 H 1.09000 * 117.50138 * 145.02507 * 18 17 15 36 36 H 1.09003 * 117.49319 * 214.97925 * 19 17 15 37 37 H 1.08998 * 117.50360 * 0.02562 * 19 17 15 38 38 H 1.09003 * 110.66471 * 278.16167 * 21 20 15 39 39 H 1.09001 * 110.66640 * 41.28673 * 21 20 15 40 40 H 1.09000 * 110.72360 * 204.22301 * 22 21 20 41 41 H 1.09008 * 110.87687 * 81.01939 * 22 21 20 42 42 H 1.09000 * 110.30789 * 263.04122 * 23 22 21 43 43 H 1.09000 * 110.39608 * 140.91396 * 23 22 21 44 44 H 1.09008 * 109.91472 * 333.50344 * 24 20 15 45 45 H 1.08999 * 109.92068 * 94.60450 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4982 1.4448 0.1427 5 6 4.0661 1.6450 1.3742 6 1 5.1344 1.7776 1.4612 7 6 3.2673 1.6772 2.5107 8 7 2.1306 1.0182 2.5338 9 14 3.8091 2.6574 4.0058 10 1 3.1902 4.0066 3.9641 11 1 3.3799 1.9538 5.2410 12 1 5.2882 2.7909 4.0007 13 6 4.2812 1.2501 -0.9368 14 8 5.4858 1.3524 -0.8388 15 6 3.6598 0.9113 -2.2673 16 1 2.5738 0.9539 -2.1825 17 6 4.0838 -0.4985 -2.6842 18 6 2.9760 -1.5192 -2.9520 19 6 3.8344 -1.6342 -1.6898 20 7 4.1101 1.8772 -3.2783 21 6 3.5623 1.5407 -4.6173 22 6 3.6773 2.8767 -5.3934 23 6 3.3395 3.9326 -4.3159 24 6 3.6154 3.2365 -2.9702 25 1 -0.3633 0.5882 0.8427 26 1 -0.3633 0.4359 -0.9307 27 1 -0.3634 -1.0239 0.0879 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5928 1.9860 0.8321 31 1 1.7661 1.9246 -0.9383 32 1 1.5728 1.0410 3.3270 33 1 4.9814 -0.5566 -3.2999 34 1 1.9450 -1.1866 -2.8308 35 1 3.1449 -2.2492 -3.7436 36 1 4.5677 -2.4397 -1.6517 37 1 3.3679 -1.3772 -0.7388 38 1 4.1620 0.7656 -5.0946 39 1 2.5206 1.2293 -4.5396 40 1 2.9546 2.9126 -6.2086 41 1 4.6897 3.0209 -5.7707 42 1 2.2906 4.2211 -4.3846 43 1 3.9799 4.8075 -4.4275 44 1 2.6952 3.1739 -2.3891 45 1 4.3707 3.7888 -2.4112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352447970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:00 Heat of formation + Delta-G solvation = 11.223307 kcal Electronic energy + Delta-G solvation = -24246.214260 eV Core-core repulsion = 21072.178303 eV Total energy + Delta-G solvation = -3174.035957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.78467 -37.68722 -36.38255 -35.22325 -32.38518 -31.61988 -31.13371 -28.64482 -26.74581 -25.57030 -24.14850 -22.14235 -21.49801 -21.02354 -20.74471 -19.92586 -18.31241 -16.94807 -16.45132 -16.10706 -15.52924 -14.65226 -14.36882 -14.14473 -13.89926 -13.63267 -13.47954 -13.21262 -12.84919 -12.37965 -12.20240 -11.88380 -11.82891 -11.73605 -11.39257 -11.25213 -11.14416 -10.98058 -10.94279 -10.83430 -10.63359 -10.37920 -10.31636 -10.28884 -10.02631 -9.94000 -9.80193 -9.65883 -8.81205 -8.29276 -7.82237 -7.68440 -6.34225 -3.71251 3.16821 3.28710 3.34364 3.79881 4.04490 4.25460 4.34394 4.82208 4.84510 5.01722 5.07740 5.13677 5.29572 5.36631 5.46208 5.50816 5.64521 5.68625 5.79358 5.84638 5.90402 5.93294 5.93898 5.94843 5.97934 6.07999 6.17392 6.24656 6.29561 6.31874 6.34575 6.43405 6.47832 6.61198 6.73228 6.77503 6.86298 7.24639 7.28083 7.38109 7.47281 7.70179 8.16236 8.57024 9.25562 9.49945 10.09068 10.67400 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.006788 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.366386 B = 4124.200707 C = 4660.871725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.126 3.874 4 N -0.446 5.446 5 C -0.307 4.307 6 H 0.103 0.897 7 C 0.032 3.968 8 N -0.862 5.862 9 Si 0.911 3.089 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.461 3.539 14 O -0.572 6.572 15 C 0.096 3.904 16 H 0.056 0.944 17 C -0.126 4.126 18 C -0.186 4.186 19 C -0.177 4.177 20 N -0.494 5.494 21 C 0.038 3.962 22 C -0.122 4.122 23 C -0.128 4.128 24 C 0.036 3.964 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -0.301 -11.150 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.002 3.998 4 N -0.165 5.165 5 C -0.434 4.434 6 H 0.121 0.879 7 C -0.171 4.171 8 N -0.501 5.501 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.248 3.752 14 O -0.455 6.455 15 C -0.016 4.016 16 H 0.073 0.927 17 C -0.144 4.144 18 C -0.223 4.223 19 C -0.214 4.214 20 N -0.219 5.219 21 C -0.090 4.090 22 C -0.160 4.160 23 C -0.167 4.167 24 C -0.092 4.092 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.878 -0.288 -10.916 11.588 hybrid contribution -0.943 0.376 0.895 1.354 sum -4.822 0.089 -10.021 11.121 Atomic orbital electron populations 1.21595 0.97240 1.00311 1.00302 1.22126 0.94371 0.98360 1.02341 1.21533 0.81853 0.97035 0.99387 1.43827 1.04650 1.61299 1.06714 1.19687 0.94883 1.46690 0.82128 0.87884 1.25103 0.96265 0.97063 0.98650 1.70149 1.14006 1.36300 1.29668 0.86144 0.79396 0.80047 0.80593 1.20619 1.21247 1.19429 1.19555 0.87200 0.83741 0.84723 1.90497 1.14560 1.55281 1.85128 1.21482 0.97198 0.91024 0.91851 0.92674 1.21920 0.99835 0.89132 1.03563 1.23094 0.96245 1.02689 1.00317 1.23200 1.02661 1.00329 0.95221 1.64640 1.55290 1.01032 1.00958 1.23192 0.97975 0.97476 0.90369 1.22461 1.01852 0.94550 0.97167 1.22383 1.01069 0.98583 0.94634 1.22847 0.99277 0.90388 0.96694 0.92481 0.94776 0.94000 0.93859 0.88535 0.87966 0.95711 0.92437 0.87212 0.89095 0.89157 0.89148 0.87099 0.90191 0.94087 0.91478 0.90871 0.91827 0.91198 0.93900 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.91 37.16 0.37 -1.93 16 2 C -0.13 -2.66 4.50 -26.73 -0.12 -2.78 16 3 C 0.13 2.76 4.19 -4.04 -0.02 2.74 16 4 N -0.45 -11.17 2.65 -114.82 -0.30 -11.48 16 5 C -0.31 -8.41 9.42 -14.94 -0.14 -8.55 16 6 H 0.10 3.05 7.32 -52.49 -0.38 2.67 16 7 C 0.03 0.82 4.84 -17.47 -0.08 0.74 16 8 N -0.86 -21.45 8.96 55.50 0.50 -20.95 16 9 Si 0.91 20.42 29.63 -169.99 -5.04 15.38 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.46 11.34 5.16 -10.99 -0.06 11.28 16 14 O -0.57 -16.42 16.61 5.55 0.09 -16.33 16 15 C 0.10 1.89 0.99 -68.86 -0.07 1.82 16 16 H 0.06 1.06 4.41 -51.92 -0.23 0.83 16 17 C -0.13 -2.23 4.34 -90.62 -0.39 -2.63 16 18 C -0.19 -2.72 9.67 -26.69 -0.26 -2.98 16 19 C -0.18 -3.11 9.17 -26.69 -0.24 -3.35 16 20 N -0.49 -8.95 5.07 -223.87 -1.13 -10.08 16 21 C 0.04 0.53 5.72 -1.90 -0.01 0.52 16 22 C -0.12 -1.46 7.06 -24.87 -0.18 -1.63 16 23 C -0.13 -1.66 6.93 -25.37 -0.18 -1.83 16 24 C 0.04 0.61 6.01 -2.75 -0.02 0.60 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.81 2.94 -51.93 -0.15 0.66 16 29 H 0.10 2.24 6.70 -51.93 -0.35 1.89 16 30 H 0.10 2.43 5.80 -51.93 -0.30 2.13 16 31 H 0.02 0.50 5.57 -51.93 -0.29 0.21 16 32 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 33 H 0.11 1.97 8.09 -51.93 -0.42 1.55 16 34 H 0.09 1.30 7.19 -51.93 -0.37 0.93 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.11 2.23 5.43 -51.93 -0.28 1.94 16 38 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 39 H 0.04 0.56 8.02 -51.93 -0.42 0.14 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.76 6.63 -51.92 -0.34 0.41 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -29.28 337.89 -9.50 -38.78 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.31 Total: 7.58 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.39 Total: -7.99 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.94 Total: -42.52 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.33 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.04 Total: 15.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.28 -9.50 -38.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352447970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.003 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds