Wall clock time and date at job start Tue Mar 31 2020 02:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47605 * 2 1 4 4 N 1.46504 * 109.47288 * 174.07079 * 3 2 1 5 5 C 1.37090 * 120.00150 * 262.31946 * 4 3 2 6 6 H 1.07998 * 120.00474 * 188.11113 * 5 4 3 7 7 C 1.38952 * 120.00056 * 8.11483 * 5 4 3 8 8 N 1.31410 * 120.00134 * 27.40819 * 7 5 4 9 9 Si 1.86800 * 120.00081 * 207.41263 * 7 5 4 10 10 H 1.48499 * 109.47333 * 94.99003 * 9 7 5 11 11 H 1.48495 * 109.47155 * 214.99268 * 9 7 5 12 12 H 1.48509 * 109.46989 * 334.99157 * 9 7 5 13 13 C 1.34773 * 119.99787 * 82.31753 * 4 3 2 14 14 O 1.21294 * 120.00175 * 174.41284 * 13 4 3 15 15 C 1.50703 * 120.00439 * 354.68635 * 13 4 3 16 16 H 1.09008 * 109.46939 * 4.95658 * 15 13 4 17 17 C 1.52998 * 109.47637 * 244.95519 * 15 13 4 18 18 C 1.52995 * 117.50007 * 122.48579 * 17 15 13 19 19 C 1.52999 * 117.49617 * 53.82327 * 17 15 13 20 20 N 1.46898 * 109.47268 * 124.94922 * 15 13 4 21 21 C 1.48533 * 111.00289 * 177.60888 * 20 15 13 22 22 C 1.54932 * 103.22848 * 159.72131 * 21 20 15 23 23 C 1.54593 * 102.92598 * 322.58744 * 22 21 20 24 24 C 1.47906 * 111.00331 * 295.00703 * 20 15 13 25 25 H 1.09001 * 109.46734 * 304.91413 * 1 2 3 26 26 H 1.09002 * 109.46890 * 64.90150 * 1 2 3 27 27 H 1.09002 * 109.47444 * 184.90858 * 1 2 3 28 28 H 1.09005 * 109.46574 * 239.99110 * 2 1 3 29 29 H 1.09000 * 109.46867 * 120.00069 * 2 1 3 30 30 H 1.08996 * 109.47593 * 54.06930 * 3 2 1 31 31 H 1.08998 * 109.47090 * 294.06871 * 3 2 1 32 32 H 0.96997 * 120.00183 * 180.02562 * 8 7 5 33 33 H 1.09006 * 115.54739 * 268.16058 * 17 15 13 34 34 H 1.09004 * 117.50030 * 359.97438 * 18 17 15 35 35 H 1.09000 * 117.50138 * 145.02507 * 18 17 15 36 36 H 1.09003 * 117.49319 * 214.97925 * 19 17 15 37 37 H 1.08998 * 117.50360 * 0.02562 * 19 17 15 38 38 H 1.09003 * 110.66471 * 278.16167 * 21 20 15 39 39 H 1.09001 * 110.66640 * 41.28673 * 21 20 15 40 40 H 1.09000 * 110.72360 * 204.22301 * 22 21 20 41 41 H 1.09008 * 110.87687 * 81.01939 * 22 21 20 42 42 H 1.09000 * 110.30789 * 263.04122 * 23 22 21 43 43 H 1.09000 * 110.39608 * 140.91396 * 23 22 21 44 44 H 1.09008 * 109.91472 * 333.50344 * 24 20 15 45 45 H 1.08999 * 109.92068 * 94.60450 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4982 1.4448 0.1427 5 6 4.0661 1.6450 1.3742 6 1 5.1344 1.7776 1.4612 7 6 3.2673 1.6772 2.5107 8 7 2.1306 1.0182 2.5338 9 14 3.8091 2.6574 4.0058 10 1 3.1902 4.0066 3.9641 11 1 3.3799 1.9538 5.2410 12 1 5.2882 2.7909 4.0007 13 6 4.2812 1.2501 -0.9368 14 8 5.4858 1.3524 -0.8388 15 6 3.6598 0.9113 -2.2673 16 1 2.5738 0.9539 -2.1825 17 6 4.0838 -0.4985 -2.6842 18 6 2.9760 -1.5192 -2.9520 19 6 3.8344 -1.6342 -1.6898 20 7 4.1101 1.8772 -3.2783 21 6 3.5623 1.5407 -4.6173 22 6 3.6773 2.8767 -5.3934 23 6 3.3395 3.9326 -4.3159 24 6 3.6154 3.2365 -2.9702 25 1 -0.3633 0.5882 0.8427 26 1 -0.3633 0.4359 -0.9307 27 1 -0.3634 -1.0239 0.0879 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5928 1.9860 0.8321 31 1 1.7661 1.9246 -0.9383 32 1 1.5728 1.0410 3.3270 33 1 4.9814 -0.5566 -3.2999 34 1 1.9450 -1.1866 -2.8308 35 1 3.1449 -2.2492 -3.7436 36 1 4.5677 -2.4397 -1.6517 37 1 3.3679 -1.3772 -0.7388 38 1 4.1620 0.7656 -5.0946 39 1 2.5206 1.2293 -4.5396 40 1 2.9546 2.9126 -6.2086 41 1 4.6897 3.0209 -5.7707 42 1 2.2906 4.2211 -4.3846 43 1 3.9799 4.8075 -4.4275 44 1 2.6952 3.1739 -2.3891 45 1 4.3707 3.7888 -2.4112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352447970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:59 Heat of formation + Delta-G solvation = -6.789321 kcal Electronic energy + Delta-G solvation = -24246.995347 eV Core-core repulsion = 21072.178303 eV Total energy + Delta-G solvation = -3174.817044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38000 -39.20023 -37.76673 -37.15945 -34.19302 -33.18098 -32.73819 -29.81687 -28.37724 -27.19222 -25.95214 -23.51951 -22.83368 -22.36392 -22.21039 -21.21429 -20.01440 -18.88164 -18.21847 -17.48604 -16.81603 -16.47607 -16.06179 -15.60064 -15.42224 -15.26820 -14.98745 -14.63957 -14.39974 -13.93205 -13.69231 -13.44271 -13.30321 -13.20686 -13.00639 -12.73920 -12.53070 -12.43334 -12.26778 -12.19501 -12.11918 -12.03205 -12.01497 -11.73588 -11.42958 -11.40877 -11.24250 -11.17513 -10.73687 -10.10953 -9.67004 -9.27065 -8.34283 -5.79905 1.32928 1.40522 1.51121 2.00397 2.25898 2.75267 2.85702 3.09313 3.29776 3.69895 3.78506 3.92364 3.98298 4.01271 4.07168 4.14954 4.32073 4.32340 4.39176 4.47959 4.57928 4.62452 4.66489 4.75619 4.77738 4.83065 4.92888 4.95134 5.00918 5.06472 5.11445 5.19698 5.20709 5.23517 5.26863 5.34190 5.36265 5.47408 5.61212 5.86704 5.94521 6.02082 6.17508 6.57881 7.23821 7.53951 8.14415 8.64443 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.006788 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.366386 B = 4124.200707 C = 4660.871725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C 0.130 3.870 4 N -0.453 5.453 5 C -0.353 4.353 6 H 0.065 0.935 7 C 0.012 3.988 8 N -0.857 5.857 9 Si 0.970 3.030 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.283 1.283 13 C 0.451 3.549 14 O -0.629 6.629 15 C 0.114 3.886 16 H 0.060 0.940 17 C -0.145 4.145 18 C -0.139 4.139 19 C -0.199 4.199 20 N -0.519 5.519 21 C 0.037 3.963 22 C -0.113 4.113 23 C -0.120 4.120 24 C 0.033 3.967 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.273 0.727 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.032 0.968 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 -0.726 -13.239 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.007 3.993 4 N -0.171 5.171 5 C -0.481 4.481 6 H 0.083 0.917 7 C -0.192 4.192 8 N -0.495 5.495 9 Si 0.795 3.205 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.209 1.209 13 C 0.240 3.760 14 O -0.516 6.516 15 C 0.002 3.998 16 H 0.078 0.922 17 C -0.164 4.164 18 C -0.176 4.176 19 C -0.237 4.237 20 N -0.245 5.245 21 C -0.090 4.090 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.095 4.095 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.459 -0.724 -13.010 14.543 hybrid contribution -0.138 0.497 1.615 1.695 sum -6.596 -0.227 -11.396 13.169 Atomic orbital electron populations 1.21526 0.94387 1.01562 1.01178 1.21957 0.96683 0.96310 1.01198 1.21567 0.79970 0.98473 0.99296 1.44002 1.06023 1.60835 1.06263 1.19447 0.93794 1.50597 0.84229 0.91720 1.25688 0.96386 0.96791 1.00344 1.70208 1.13882 1.34910 1.30452 0.85294 0.78181 0.79112 0.77963 1.19535 1.19720 1.20873 1.20501 0.86689 0.82415 0.86413 1.90439 1.17065 1.57762 1.86324 1.21224 0.96626 0.92497 0.89426 0.92201 1.21918 1.01719 0.88444 1.04351 1.23189 0.95380 1.00448 0.98554 1.23162 1.04475 1.00830 0.95217 1.64550 1.56532 1.00992 1.02399 1.23323 0.98565 0.99059 0.88055 1.22478 1.02949 0.92455 0.97254 1.22369 1.02573 0.98720 0.92187 1.22827 0.97363 0.90440 0.98904 0.93567 0.92280 0.92206 0.92552 0.92215 0.90001 0.93926 0.91686 0.87595 0.88052 0.85685 0.88360 0.90027 0.89377 0.92825 0.88129 0.90883 0.89716 0.90466 0.94994 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.91 71.98 0.71 -3.32 16 2 C -0.12 -4.87 4.50 30.59 0.14 -4.73 16 3 C 0.13 5.79 4.19 86.38 0.36 6.15 16 4 N -0.45 -23.90 2.65 -635.56 -1.68 -25.59 16 5 C -0.35 -20.61 9.42 84.04 0.79 -19.82 16 6 H 0.06 4.19 7.32 -2.91 -0.02 4.17 16 7 C 0.01 0.63 4.84 84.93 0.41 1.04 16 8 N -0.86 -43.18 8.96 21.66 0.19 -42.98 16 9 Si 0.97 42.83 29.63 68.60 2.03 44.86 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 C 0.45 23.38 5.16 87.66 0.45 23.83 16 14 O -0.63 -38.79 16.61 -3.07 -0.05 -38.84 16 15 C 0.11 4.50 0.99 44.17 0.04 4.54 16 16 H 0.06 2.25 4.41 -2.38 -0.01 2.24 16 17 C -0.15 -5.06 4.34 -10.80 -0.05 -5.11 16 18 C -0.14 -3.61 9.67 30.62 0.30 -3.31 16 19 C -0.20 -6.93 9.17 30.62 0.28 -6.65 16 20 N -0.52 -18.72 5.07 -862.21 -4.37 -23.09 16 21 C 0.04 0.94 5.72 86.65 0.50 1.43 16 22 C -0.11 -2.32 7.06 31.80 0.22 -2.09 16 23 C -0.12 -2.85 6.93 31.47 0.22 -2.63 16 24 C 0.03 1.13 6.01 86.45 0.52 1.65 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 2.06 2.94 -2.38 -0.01 2.05 16 29 H 0.06 2.82 6.70 -2.39 -0.02 2.80 16 30 H 0.08 3.96 5.80 -2.39 -0.01 3.95 16 31 H 0.04 1.72 5.57 -2.39 -0.01 1.71 16 32 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 33 H 0.11 3.75 8.09 -2.38 -0.02 3.73 16 34 H 0.10 2.46 7.19 -2.38 -0.02 2.45 16 35 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.08 3.35 5.43 -2.39 -0.01 3.34 16 38 H 0.09 2.10 7.90 -2.39 -0.02 2.08 16 39 H 0.05 1.24 8.02 -2.39 -0.02 1.22 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.03 1.14 6.63 -2.38 -0.02 1.12 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.21 337.89 2.00 -67.21 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.97 Total: 27.44 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.90 Total: -9.01 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -5.86 Total: -91.66 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.05 Total: -38.84 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -69.21 2.00 -67.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352447970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.420 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds