Wall clock time and date at job start Tue Mar 31 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99611 * 2 1 4 4 N 1.46902 * 109.46766 * 125.66537 * 3 2 1 5 5 C 1.46900 * 111.00191 * 64.89945 * 4 3 2 6 6 C 1.50692 * 109.47153 * 66.04377 * 5 4 3 7 7 H 1.07999 * 120.00096 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99655 * 180.02562 * 8 6 5 10 10 Si 1.86789 * 119.99903 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47325 * 89.99873 * 10 8 6 12 12 H 1.48505 * 109.47254 * 209.99716 * 10 8 6 13 13 H 1.48493 * 109.47320 * 329.99738 * 10 8 6 14 14 C 1.46898 * 110.99983 * 300.94333 * 4 3 2 15 15 C 1.53004 * 109.47076 * 288.27622 * 14 4 3 16 16 C 1.50704 * 109.47172 * 178.17648 * 15 14 4 17 17 O 1.21288 * 119.99711 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00336 * 179.97438 * 16 15 14 19 19 C 1.46927 * 120.62982 * 359.72922 * 18 16 15 20 20 C 1.53621 * 108.54864 * 126.36298 * 19 18 16 21 21 C 1.53043 * 109.24001 * 54.85523 * 20 19 18 22 22 C 1.53042 * 109.53713 * 298.51200 * 21 20 19 23 23 C 1.46923 * 120.63387 * 179.97438 * 18 16 15 24 24 H 1.07997 * 120.00270 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99722 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00270 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47363 * 5.66459 * 3 2 1 28 28 H 1.09001 * 109.47213 * 245.66093 * 3 2 1 29 29 H 1.08998 * 109.46566 * 186.04554 * 5 4 3 30 30 H 1.09000 * 109.47013 * 306.04124 * 5 4 3 31 31 H 0.97000 * 119.99942 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47243 * 48.27873 * 14 4 3 33 33 H 1.09003 * 109.47367 * 168.27693 * 14 4 3 34 34 H 1.08992 * 109.47612 * 298.17770 * 15 14 4 35 35 H 1.09002 * 109.46885 * 58.18456 * 15 14 4 36 36 H 1.09002 * 109.58239 * 246.20424 * 19 18 16 37 37 H 1.09007 * 109.58604 * 6.61730 * 19 18 16 38 38 H 1.08993 * 109.63280 * 294.86583 * 20 19 18 39 39 H 1.09000 * 109.46031 * 174.73909 * 20 19 18 40 40 H 1.08998 * 109.46321 * 178.49270 * 21 20 19 41 41 H 1.09002 * 109.45770 * 58.53373 * 21 20 19 42 42 H 1.08993 * 109.49813 * 301.41394 * 22 21 20 43 43 H 1.09005 * 109.49669 * 181.31538 * 22 21 20 44 44 H 1.08999 * 109.58662 * 353.37910 * 23 18 16 45 45 H 1.09002 * 109.58501 * 113.80151 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0076 1.3255 1.1253 5 6 4.0435 0.2968 0.9620 6 6 4.9006 0.6320 -0.2313 7 1 4.6965 1.5205 -0.8102 8 6 5.9460 -0.1952 -0.5833 9 7 6.6943 0.0976 -1.6245 10 14 6.2994 -1.7317 0.4184 11 1 5.5333 -2.8743 -0.1409 12 1 7.7520 -2.0354 0.3633 13 1 5.8938 -1.5070 1.8291 14 6 2.3046 1.1662 2.4052 15 6 1.5265 2.4449 2.7223 16 6 0.7695 2.2653 4.0130 17 8 0.8453 1.2178 4.6198 18 7 0.0091 3.2689 4.4936 19 6 -0.0871 4.5460 3.7736 20 6 -1.5717 4.8649 3.5405 21 6 -2.3088 4.8428 4.8815 22 6 -2.2076 3.4458 5.4982 23 6 -0.7351 3.1086 5.7502 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3595 2.1311 0.1014 28 1 2.6119 1.4081 -0.9363 29 1 4.6645 0.2614 1.8570 30 1 3.5710 -0.6735 0.8089 31 1 7.4295 -0.4845 -1.8724 32 1 1.6124 0.3269 2.3376 33 1 3.0295 0.9763 3.1968 34 1 2.2219 3.2782 2.8219 35 1 0.8240 2.6523 1.9151 36 1 0.3703 5.3363 4.3688 37 1 0.4255 4.4646 2.8150 38 1 -2.0061 4.1198 2.8742 39 1 -1.6645 5.8534 3.0907 40 1 -3.3574 5.0950 4.7238 41 1 -1.8579 5.5709 5.5558 42 1 -2.6361 2.7140 4.8135 43 1 -2.7526 3.4244 6.4420 44 1 -0.6503 2.0785 6.0963 45 1 -0.3296 3.7839 6.5036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428850617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:37 Heat of formation + Delta-G solvation = -17.712930 kcal Electronic energy + Delta-G solvation = -22552.379994 eV Core-core repulsion = 19377.089267 eV Total energy + Delta-G solvation = -3175.290727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25143 -37.90586 -37.14860 -33.22086 -32.91700 -32.51230 -31.55033 -30.42742 -27.39958 -26.00293 -24.99547 -23.52369 -22.32036 -20.99632 -20.73929 -19.04601 -18.54014 -17.29090 -16.69351 -15.94768 -15.80345 -15.15913 -14.82676 -14.71835 -14.45422 -14.15443 -14.07729 -13.77527 -13.37282 -13.16214 -12.89314 -12.63617 -12.48533 -12.18319 -11.84428 -11.57202 -11.54493 -11.27511 -11.07649 -10.98841 -10.94042 -10.85880 -10.71591 -10.51604 -10.09757 -9.83086 -9.64126 -9.35810 -8.88070 -8.76027 -8.55639 -7.38814 -6.03936 -4.00808 2.68283 2.69837 2.89640 3.30446 3.38461 3.42376 4.35873 4.44280 4.48028 4.56184 4.66089 4.80156 5.00337 5.05956 5.16426 5.23443 5.27395 5.29779 5.39047 5.46045 5.48877 5.53913 5.55995 5.62680 5.66000 5.73157 5.78826 5.89692 5.96217 6.00589 6.24174 6.31914 6.37491 6.48916 6.59211 6.86507 6.96525 7.04238 7.16627 7.32089 7.63046 7.88751 8.04423 8.22335 8.66322 9.03866 9.58283 11.09090 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.003740 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.842157 B = 7485.498763 C = 7689.777872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C 0.083 3.917 4 N -0.521 5.521 5 C 0.160 3.840 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.901 5.901 10 Si 0.872 3.128 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.065 3.935 15 C -0.131 4.131 16 C 0.518 3.482 17 O -0.541 6.541 18 N -0.618 5.618 19 C 0.105 3.895 20 C -0.136 4.136 21 C -0.120 4.120 22 C -0.135 4.135 23 C 0.110 3.890 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.029 0.971 30 H -0.011 1.011 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.517 9.883 11.648 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.181 4.181 3 C -0.045 4.045 4 N -0.243 5.243 5 C 0.034 3.966 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.191 1.191 14 C -0.064 4.064 15 C -0.171 4.171 16 C 0.307 3.693 17 O -0.417 6.417 18 N -0.353 5.353 19 C -0.018 4.018 20 C -0.175 4.175 21 C -0.157 4.157 22 C -0.173 4.173 23 C -0.013 4.013 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.127 0.873 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.047 0.953 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.033 9.714 11.879 23.678 hybrid contribution -0.202 -1.616 0.419 1.682 sum -18.235 8.098 12.297 23.438 Atomic orbital electron populations 1.23639 0.95891 1.00815 1.04531 1.23860 0.96272 1.01414 0.96554 1.21376 0.93746 0.92304 0.97055 1.62200 1.11974 1.50456 0.99663 1.20220 0.89786 0.88437 0.98202 1.21016 1.12353 1.10475 1.10691 0.90092 1.24875 0.95835 0.97628 0.94913 1.69891 1.19330 1.38364 1.26404 0.86904 0.77639 0.84004 0.81496 1.20375 1.21165 1.19075 1.21807 0.96922 0.94309 0.93359 1.21652 0.99552 1.01998 0.93945 1.20962 0.78544 0.82691 0.87067 1.90680 1.63562 1.27015 1.60488 1.48153 1.48034 1.14686 1.24468 1.21865 0.96876 0.85302 0.97736 1.22001 0.95323 1.02302 0.97828 1.21515 1.00482 0.96995 0.96744 1.21907 0.96430 0.97487 1.01466 1.21531 0.90786 1.03213 0.85739 0.89264 0.89453 0.87347 0.92100 0.88335 0.95344 0.99318 0.92697 0.94216 0.90961 0.88236 0.89160 0.91281 0.89053 0.91361 0.90632 0.91771 0.91781 0.91544 0.90910 0.89076 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.15 14.32 29.01 0.42 -2.74 16 2 C -0.16 -2.85 7.42 -36.02 -0.27 -3.12 16 3 C 0.08 1.53 5.46 -4.97 -0.03 1.51 16 4 N -0.52 -10.66 4.66 -237.52 -1.11 -11.77 16 5 C 0.16 3.87 3.63 -4.98 -0.02 3.85 16 6 C -0.51 -14.20 9.00 -34.44 -0.31 -14.51 16 7 H 0.08 2.44 7.38 -52.49 -0.39 2.05 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 10 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 14 C 0.06 1.18 4.11 -3.82 -0.02 1.16 16 15 C -0.13 -1.85 4.12 -27.88 -0.11 -1.97 16 16 C 0.52 7.54 7.70 -10.99 -0.08 7.46 16 17 O -0.54 -9.91 15.39 5.55 0.09 -9.83 16 18 N -0.62 -6.89 2.97 -172.53 -0.51 -7.40 16 19 C 0.11 0.86 6.37 -3.49 -0.02 0.83 16 20 C -0.14 -0.93 6.10 -26.39 -0.16 -1.09 16 21 C -0.12 -0.77 5.88 -26.69 -0.16 -0.93 16 22 C -0.13 -1.03 6.08 -26.63 -0.16 -1.19 16 23 C 0.11 1.08 6.43 -3.73 -0.02 1.06 16 24 H 0.09 1.18 7.84 -52.49 -0.41 0.77 16 25 H 0.09 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.11 2.11 6.78 -52.49 -0.36 1.75 16 27 H 0.06 0.95 6.35 -51.93 -0.33 0.62 16 28 H 0.10 2.05 6.74 -51.93 -0.35 1.70 16 29 H 0.03 0.71 6.92 -51.93 -0.36 0.36 16 30 H -0.01 -0.26 5.78 -51.93 -0.30 -0.56 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.04 0.76 6.60 -51.93 -0.34 0.42 16 33 H 0.07 1.40 7.81 -51.93 -0.41 1.00 16 34 H 0.10 1.31 7.93 -51.93 -0.41 0.90 16 35 H 0.09 1.14 6.27 -51.93 -0.33 0.81 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.72 5.93 -51.92 -0.31 0.41 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -32.19 348.11 -8.85 -41.04 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.62 Total: 0.11 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.05 Total: -7.78 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.84 Total: -45.87 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.19 -8.85 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428850617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.330 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds