Wall clock time and date at job start Tue Mar 31 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99611 * 2 1 4 4 N 1.46902 * 109.46766 * 125.66537 * 3 2 1 5 5 C 1.46900 * 111.00191 * 64.89945 * 4 3 2 6 6 C 1.50692 * 109.47153 * 66.04377 * 5 4 3 7 7 H 1.07999 * 120.00096 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99655 * 180.02562 * 8 6 5 10 10 Si 1.86789 * 119.99903 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47325 * 89.99873 * 10 8 6 12 12 H 1.48505 * 109.47254 * 209.99716 * 10 8 6 13 13 H 1.48493 * 109.47320 * 329.99738 * 10 8 6 14 14 C 1.46898 * 110.99983 * 300.94333 * 4 3 2 15 15 C 1.53004 * 109.47076 * 288.27622 * 14 4 3 16 16 C 1.50704 * 109.47172 * 178.17648 * 15 14 4 17 17 O 1.21288 * 119.99711 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00336 * 179.97438 * 16 15 14 19 19 C 1.46927 * 120.62982 * 359.72922 * 18 16 15 20 20 C 1.53621 * 108.54864 * 126.36298 * 19 18 16 21 21 C 1.53043 * 109.24001 * 54.85523 * 20 19 18 22 22 C 1.53042 * 109.53713 * 298.51200 * 21 20 19 23 23 C 1.46923 * 120.63387 * 179.97438 * 18 16 15 24 24 H 1.07997 * 120.00270 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99722 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00270 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47363 * 5.66459 * 3 2 1 28 28 H 1.09001 * 109.47213 * 245.66093 * 3 2 1 29 29 H 1.08998 * 109.46566 * 186.04554 * 5 4 3 30 30 H 1.09000 * 109.47013 * 306.04124 * 5 4 3 31 31 H 0.97000 * 119.99942 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47243 * 48.27873 * 14 4 3 33 33 H 1.09003 * 109.47367 * 168.27693 * 14 4 3 34 34 H 1.08992 * 109.47612 * 298.17770 * 15 14 4 35 35 H 1.09002 * 109.46885 * 58.18456 * 15 14 4 36 36 H 1.09002 * 109.58239 * 246.20424 * 19 18 16 37 37 H 1.09007 * 109.58604 * 6.61730 * 19 18 16 38 38 H 1.08993 * 109.63280 * 294.86583 * 20 19 18 39 39 H 1.09000 * 109.46031 * 174.73909 * 20 19 18 40 40 H 1.08998 * 109.46321 * 178.49270 * 21 20 19 41 41 H 1.09002 * 109.45770 * 58.53373 * 21 20 19 42 42 H 1.08993 * 109.49813 * 301.41394 * 22 21 20 43 43 H 1.09005 * 109.49669 * 181.31538 * 22 21 20 44 44 H 1.08999 * 109.58662 * 353.37910 * 23 18 16 45 45 H 1.09002 * 109.58501 * 113.80151 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0076 1.3255 1.1253 5 6 4.0435 0.2968 0.9620 6 6 4.9006 0.6320 -0.2313 7 1 4.6965 1.5205 -0.8102 8 6 5.9460 -0.1952 -0.5833 9 7 6.6943 0.0976 -1.6245 10 14 6.2994 -1.7317 0.4184 11 1 5.5333 -2.8743 -0.1409 12 1 7.7520 -2.0354 0.3633 13 1 5.8938 -1.5070 1.8291 14 6 2.3046 1.1662 2.4052 15 6 1.5265 2.4449 2.7223 16 6 0.7695 2.2653 4.0130 17 8 0.8453 1.2178 4.6198 18 7 0.0091 3.2689 4.4936 19 6 -0.0871 4.5460 3.7736 20 6 -1.5717 4.8649 3.5405 21 6 -2.3088 4.8428 4.8815 22 6 -2.2076 3.4458 5.4982 23 6 -0.7351 3.1086 5.7502 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3595 2.1311 0.1014 28 1 2.6119 1.4081 -0.9363 29 1 4.6645 0.2614 1.8570 30 1 3.5710 -0.6735 0.8089 31 1 7.4295 -0.4845 -1.8724 32 1 1.6124 0.3269 2.3376 33 1 3.0295 0.9763 3.1968 34 1 2.2219 3.2782 2.8219 35 1 0.8240 2.6523 1.9151 36 1 0.3703 5.3363 4.3688 37 1 0.4255 4.4646 2.8150 38 1 -2.0061 4.1198 2.8742 39 1 -1.6645 5.8534 3.0907 40 1 -3.3574 5.0950 4.7238 41 1 -1.8579 5.5709 5.5558 42 1 -2.6361 2.7140 4.8135 43 1 -2.7526 3.4244 6.4420 44 1 -0.6503 2.0785 6.0963 45 1 -0.3296 3.7839 6.5036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428850617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:37 Heat of formation + Delta-G solvation = -38.898812 kcal Electronic energy + Delta-G solvation = -22553.298682 eV Core-core repulsion = 19377.089267 eV Total energy + Delta-G solvation = -3176.209416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25222 -39.25208 -38.23374 -34.89819 -34.22364 -33.81145 -32.57013 -31.63361 -29.21086 -27.21582 -26.09166 -24.45765 -23.66062 -22.48373 -21.63236 -20.25968 -19.69332 -18.92247 -18.23904 -17.10128 -16.93093 -16.57761 -16.29028 -15.94590 -15.49219 -15.31199 -14.96900 -14.87407 -14.53828 -14.37420 -14.22066 -14.12286 -13.63040 -13.51798 -13.25661 -13.01367 -12.78098 -12.57113 -12.37915 -12.19351 -12.07349 -11.84326 -11.81393 -11.67007 -11.57917 -11.47636 -11.44431 -10.79326 -10.77723 -10.25384 -9.63245 -9.04560 -8.28113 -6.29413 1.31520 1.33708 1.38002 1.44529 1.60141 1.98984 2.33233 3.05102 3.21429 3.70630 3.86758 3.95757 4.00672 4.05722 4.09503 4.17770 4.24085 4.25598 4.38589 4.51969 4.55106 4.64367 4.67580 4.81522 4.86979 4.87427 4.93164 4.96652 4.98149 5.03550 5.09532 5.11895 5.18580 5.22031 5.25680 5.47243 5.53089 5.61776 5.68908 5.80506 5.98909 6.34945 6.39532 6.62143 6.76069 7.16260 7.33566 8.88103 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.003740 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.842157 B = 7485.498763 C = 7689.777872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.197 4.197 3 C 0.089 3.911 4 N -0.528 5.528 5 C 0.170 3.830 6 C -0.507 4.507 7 H 0.047 0.953 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.936 3.064 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.257 1.257 14 C 0.072 3.928 15 C -0.119 4.119 16 C 0.515 3.485 17 O -0.589 6.589 18 N -0.611 5.611 19 C 0.097 3.903 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.129 4.129 23 C 0.105 3.895 24 H 0.116 0.884 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.020 0.980 30 H -0.013 1.013 31 H 0.266 0.734 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.900 11.133 12.810 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.217 4.217 3 C -0.039 4.039 4 N -0.250 5.250 5 C 0.042 3.958 6 C -0.545 4.545 7 H 0.065 0.935 8 C -0.184 4.184 9 N -0.586 5.586 10 Si 0.760 3.240 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.181 1.181 14 C -0.057 4.057 15 C -0.159 4.159 16 C 0.304 3.696 17 O -0.470 6.470 18 N -0.344 5.344 19 C -0.025 4.025 20 C -0.171 4.171 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.018 4.018 24 H 0.134 0.866 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.005 0.995 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.458 11.017 13.046 26.648 hybrid contribution 0.417 -1.895 0.042 1.941 sum -20.041 9.122 13.089 25.616 Atomic orbital electron populations 1.23918 0.94709 1.02774 0.99716 1.23592 0.97300 0.99814 1.00997 1.21309 0.93595 0.94228 0.94727 1.62121 1.12540 1.48851 1.01473 1.19943 0.90422 0.89482 0.95912 1.21207 1.12803 1.09146 1.11372 0.93468 1.25696 0.95749 1.00980 0.96009 1.70022 1.20257 1.39999 1.28273 0.85877 0.77760 0.80054 0.80262 1.19514 1.20422 1.18108 1.21716 0.96310 0.96342 0.91340 1.21516 0.99743 0.99990 0.94654 1.20974 0.78886 0.82759 0.86953 1.90664 1.65474 1.29069 1.61777 1.48239 1.46575 1.14863 1.24695 1.22169 0.98354 0.84024 0.97946 1.21998 0.93962 1.03140 0.98007 1.21528 1.01337 0.96066 0.96595 1.21871 0.94595 0.98094 1.02142 1.21666 0.92349 1.02229 0.85515 0.86597 0.87995 0.90002 0.88541 0.91682 0.96171 0.99506 0.92462 0.95210 0.92902 0.86930 0.87014 0.89626 0.88573 0.92257 0.88550 0.90588 0.90745 0.92938 0.89342 0.91604 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.72 14.32 67.78 0.97 -3.75 16 2 C -0.20 -6.87 7.42 25.65 0.19 -6.68 16 3 C 0.09 3.26 5.46 85.56 0.47 3.72 16 4 N -0.53 -21.74 4.66 -905.37 -4.22 -25.95 16 5 C 0.17 8.40 3.63 85.55 0.31 8.72 16 6 C -0.51 -29.37 9.00 25.60 0.23 -29.14 16 7 H 0.05 2.99 7.38 -2.91 -0.02 2.97 16 8 C 0.01 0.78 5.47 84.66 0.46 1.24 16 9 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 10 Si 0.94 45.51 27.47 68.60 1.88 47.40 16 11 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 14 C 0.07 2.58 4.11 86.30 0.35 2.94 16 15 C -0.12 -3.16 4.12 29.85 0.12 -3.04 16 16 C 0.51 14.45 7.70 87.66 0.67 15.12 16 17 O -0.59 -21.77 15.39 -3.05 -0.05 -21.82 16 18 N -0.61 -12.41 2.97 -818.14 -2.43 -14.84 16 19 C 0.10 1.26 6.37 86.51 0.55 1.81 16 20 C -0.13 -1.33 6.10 30.82 0.19 -1.14 16 21 C -0.12 -1.10 5.88 30.62 0.18 -0.92 16 22 C -0.13 -1.67 6.08 30.66 0.19 -1.48 16 23 C 0.10 1.90 6.43 86.35 0.55 2.45 16 24 H 0.12 2.56 7.84 -2.91 -0.02 2.54 16 25 H 0.10 2.51 8.06 -2.91 -0.02 2.48 16 26 H 0.08 3.27 6.78 -2.91 -0.02 3.25 16 27 H 0.10 2.78 6.35 -2.39 -0.02 2.77 16 28 H 0.06 2.80 6.74 -2.39 -0.02 2.79 16 29 H 0.02 1.03 6.92 -2.39 -0.02 1.01 16 30 H -0.01 -0.63 5.78 -2.39 -0.01 -0.65 16 31 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.03 1.14 6.60 -2.39 -0.02 1.12 16 33 H 0.05 2.09 7.81 -2.39 -0.02 2.07 16 34 H 0.11 2.71 7.93 -2.39 -0.02 2.69 16 35 H 0.11 2.46 6.27 -2.39 -0.01 2.45 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 1.17 5.93 -2.38 -0.01 1.16 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.07 1.54 7.01 -2.39 -0.02 1.53 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -72.78 348.11 1.83 -70.96 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.89 Total: 13.32 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 5.45 Total: -10.15 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -6.35 Total: -99.71 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -72.78 1.83 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428850617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.059 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds