Wall clock time and date at job start Tue Mar 31 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46796 * 2 1 4 4 H 1.09000 * 109.47495 * 304.30822 * 3 2 1 5 5 C 1.50703 * 109.47014 * 184.30389 * 3 2 1 6 6 H 1.08001 * 119.99821 * 239.72538 * 5 3 2 7 7 C 1.37877 * 119.99763 * 60.00300 * 5 3 2 8 8 N 1.31517 * 120.00222 * 359.72702 * 7 5 3 9 9 Si 1.86805 * 119.99850 * 179.72308 * 7 5 3 10 10 H 1.48499 * 109.47106 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46857 * 120.00171 * 9 7 5 12 12 H 1.48502 * 109.46961 * 240.00017 * 9 7 5 13 13 N 1.46905 * 109.46879 * 64.30602 * 3 2 1 14 14 C 1.46896 * 111.00024 * 205.79513 * 13 3 2 15 15 C 1.52996 * 109.47285 * 174.89700 * 14 13 3 16 16 C 1.52995 * 109.47294 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47526 * 180.02562 * 16 15 14 18 18 C 1.47203 * 109.53912 * 59.99606 * 17 16 15 19 19 N 7.97381 * 93.12225 * 42.91050 * 2 1 3 20 20 C 1.53181 * 109.53766 * 299.82501 * 17 16 15 21 21 C 1.53110 * 109.15290 * 183.23713 * 20 17 16 22 22 O 1.42898 * 109.48418 * 57.47448 * 21 20 17 23 23 C 1.42899 * 114.10119 * 298.88506 * 22 21 20 24 24 C 1.53098 * 109.41385 * 61.15926 * 23 22 21 25 25 H 1.08995 * 109.47860 * 54.07653 * 1 2 3 26 26 H 1.09009 * 109.47022 * 174.07740 * 1 2 3 27 27 H 1.08999 * 109.47131 * 294.06901 * 1 2 3 28 28 H 1.09001 * 109.47220 * 240.00679 * 2 1 3 29 29 H 1.08995 * 109.47621 * 120.00400 * 2 1 3 30 30 H 0.96990 * 119.99740 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99802 * 81.84432 * 13 3 2 32 32 H 1.09004 * 109.47286 * 294.89805 * 14 13 3 33 33 H 1.09006 * 109.47105 * 54.89986 * 14 13 3 34 34 H 1.08994 * 109.47223 * 300.00257 * 15 14 13 35 35 H 1.09006 * 109.46815 * 60.00108 * 15 14 13 36 36 H 1.09004 * 109.47148 * 300.00026 * 16 15 14 37 37 H 1.09001 * 109.47585 * 59.99883 * 16 15 14 38 38 H 1.08997 * 109.52393 * 303.05349 * 20 17 16 39 39 H 1.08993 * 109.52339 * 63.24581 * 20 17 16 40 40 H 1.08996 * 109.40797 * 297.49580 * 21 20 17 41 41 H 1.09001 * 109.48900 * 177.50773 * 21 20 17 42 42 H 1.09006 * 109.48163 * 301.17795 * 23 22 21 43 43 H 1.08997 * 109.49552 * 181.14761 * 23 22 21 44 44 H 1.09002 * 109.52236 * 182.48381 * 24 23 22 45 45 H 1.09003 * 109.57197 * 62.33003 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6149 1.9782 -0.8488 5 6 3.5431 1.4439 -0.1066 6 1 4.1393 1.8956 0.6724 7 6 4.1571 0.8736 -1.2016 8 7 3.4311 0.3237 -2.1503 9 14 6.0202 0.8822 -1.3375 10 1 6.6001 1.5563 -0.1482 11 1 6.5179 -0.5152 -1.4056 12 1 6.4234 1.6118 -2.5665 13 7 1.6369 2.1043 1.2481 14 6 1.5417 3.5588 1.0658 15 6 0.9989 4.1987 2.3451 16 6 0.8991 5.7135 2.1550 17 6 0.3569 6.3536 3.4346 18 6 1.2649 6.0593 4.5553 19 7 1.9643 5.8315 5.4210 20 6 -1.0339 5.7892 3.7402 21 6 -1.6017 6.4936 4.9754 22 8 -1.6433 7.9030 4.7433 23 6 -0.3644 8.4923 4.5000 24 6 0.2522 7.8699 3.2445 25 1 -0.3634 0.6029 -0.8321 26 1 -0.3633 -1.0223 -0.1060 27 1 -0.3633 0.4191 0.9383 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8630 -0.0778 -2.9203 31 1 2.2697 1.8748 1.9997 32 1 2.5303 3.9633 0.8484 33 1 0.8691 3.7778 0.2364 34 1 0.0104 3.7943 2.5625 35 1 1.6715 3.9798 3.1745 36 1 1.8875 6.1183 1.9374 37 1 0.2264 5.9322 1.3257 38 1 -1.6923 5.9622 2.8889 39 1 -0.9586 4.7189 3.9320 40 1 -0.9654 6.2855 5.8355 41 1 -2.6095 6.1276 5.1716 42 1 0.2881 8.3103 5.3540 43 1 -0.4806 9.5662 4.3537 44 1 1.2464 8.2862 3.0822 45 1 -0.3786 8.0862 2.3822 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577861530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:17 Heat of formation + Delta-G solvation = -48.028978 kcal Electronic energy + Delta-G solvation = -22191.390769 eV Core-core repulsion = 19014.785440 eV Total energy + Delta-G solvation = -3176.605329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.42221 -37.19637 -36.31702 -35.11610 -33.10874 -31.67695 -31.45387 -30.10995 -27.17906 -25.64461 -24.08591 -23.32324 -22.26811 -22.02533 -20.79334 -19.39418 -17.17573 -16.74194 -16.34572 -16.16323 -15.20224 -15.12555 -14.76243 -14.69701 -14.38767 -13.90858 -13.71963 -13.19224 -13.01870 -12.74938 -12.67756 -12.43905 -12.22883 -12.17793 -11.82717 -11.72053 -11.62267 -11.33554 -11.19016 -10.92411 -10.87189 -10.74282 -10.63603 -10.60488 -10.38608 -10.07718 -9.83073 -9.59596 -9.42073 -9.05279 -8.39849 -7.25880 -6.01205 -4.14199 2.62757 2.65565 3.24279 3.33035 3.36546 3.53294 3.65021 4.26009 4.38056 4.40605 4.45223 4.59860 4.85484 5.03425 5.11770 5.18828 5.23832 5.27228 5.30365 5.36052 5.44421 5.63738 5.71799 5.75361 5.76000 5.82670 5.91354 6.13269 6.24883 6.38655 6.49705 6.56480 6.69054 6.71178 6.84428 7.13141 7.16714 7.43135 7.43913 7.58970 7.76645 8.08645 8.14119 8.33054 8.65350 8.99008 9.53661 10.98735 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.003462 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.607077 B = 8085.860885 C = 8731.490494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.691 5.691 14 C 0.068 3.932 15 C -0.121 4.121 16 C -0.106 4.106 17 C 0.038 3.962 18 C 0.216 3.784 19 N -0.433 5.433 20 C -0.146 4.146 21 C 0.056 3.944 22 O -0.378 6.378 23 C 0.056 3.944 24 C -0.144 4.144 25 H 0.036 0.964 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.326 0.674 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.211 13.969 9.056 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.319 5.319 14 C -0.062 4.062 15 C -0.159 4.159 16 C -0.145 4.145 17 C 0.034 3.966 18 C -0.102 4.102 19 N -0.107 5.107 20 C -0.184 4.184 21 C -0.021 4.021 22 O -0.297 6.297 23 C -0.021 4.021 24 C -0.183 4.183 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.974 13.520 10.087 19.596 hybrid contribution 2.232 0.043 -0.578 2.306 sum -7.742 13.563 9.509 18.284 Atomic orbital electron populations 1.21679 0.98989 0.98244 1.00305 1.21500 0.92089 0.99279 1.01658 1.19151 0.92656 0.91178 0.86315 0.95066 1.21911 0.92814 1.37819 1.05875 0.92926 1.24929 0.97935 0.94989 0.95656 1.69883 1.34768 1.37993 1.09653 0.86617 0.86137 0.77787 0.77918 1.19979 1.20919 1.21005 1.60895 1.55202 1.06076 1.09769 1.21719 0.98722 0.90230 0.95527 1.21710 1.02112 0.92953 0.99160 1.21688 1.02142 0.96415 0.94257 1.18469 0.91739 0.96919 0.89430 1.29032 0.93915 0.93213 0.94035 1.81224 1.09796 1.08400 1.11314 1.22392 0.93894 1.01648 1.00484 1.22674 1.02280 0.81126 0.96039 1.87947 1.28807 1.21297 1.91646 1.22635 0.85258 0.98267 0.95896 1.22328 1.03214 0.92345 1.00397 0.94460 0.95716 0.93539 0.89190 0.95160 0.92937 0.85837 0.95645 0.92041 0.90901 0.92842 0.90913 0.89465 0.88514 0.89090 0.93473 0.88032 0.93468 0.88164 0.89825 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.72 37.16 0.36 -2.37 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.21 5.23 1.99 -68.86 -0.14 5.09 16 4 H 0.03 0.84 7.71 -51.93 -0.40 0.44 16 5 C -0.54 -14.62 8.46 -34.44 -0.29 -14.91 16 6 H 0.05 1.42 7.73 -52.49 -0.41 1.01 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.80 11.28 55.43 0.63 -24.18 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.69 -14.06 5.75 -107.95 -0.62 -14.68 16 14 C 0.07 1.18 5.51 -3.83 -0.02 1.16 16 15 C -0.12 -1.59 4.92 -26.74 -0.13 -1.73 16 16 C -0.11 -1.06 4.26 -26.73 -0.11 -1.17 16 17 C 0.04 0.34 0.51 -157.11 -0.08 0.26 16 18 C 0.22 2.59 10.45 -20.76 -0.22 2.37 16 19 N -0.43 -6.36 18.54 42.15 0.78 -5.58 16 20 C -0.15 -1.16 4.45 -26.58 -0.12 -1.28 16 21 C 0.06 0.46 6.61 37.21 0.25 0.70 16 22 O -0.38 -3.53 10.77 -35.23 -0.38 -3.91 16 23 C 0.06 0.44 6.61 37.21 0.25 0.68 16 24 C -0.14 -1.03 4.90 -26.59 -0.13 -1.16 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 28 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.33 6.75 8.46 -39.29 -0.33 6.42 16 32 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 34 H 0.07 0.91 6.51 -51.93 -0.34 0.57 16 35 H 0.05 0.78 7.23 -51.93 -0.38 0.40 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.76 6.63 -51.93 -0.34 0.41 16 40 H 0.05 0.43 7.39 -51.93 -0.38 0.05 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.41 7.39 -51.93 -0.38 0.03 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -29.72 355.00 -7.77 -37.49 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.88 Total: 2.71 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.63 Total: -13.29 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.79 Total: -44.44 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.38 Total: -3.91 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.72 -7.77 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577861530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.534 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds